Wall clock time and date at job start Tue Mar 31 2020 20:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46855 * 2 1 4 4 C 1.50698 * 109.46716 * 119.99561 * 2 1 3 5 5 H 1.08002 * 119.99938 * 120.00655 * 4 2 1 6 6 C 1.37875 * 120.00583 * 300.00095 * 4 2 1 7 7 N 1.31517 * 119.99631 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00368 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47090 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47315 * 120.00243 * 8 6 4 11 11 H 1.48496 * 109.47237 * 240.00412 * 8 6 4 12 12 N 1.46488 * 109.47206 * 239.99935 * 2 1 3 13 13 C 1.34784 * 120.00170 * 85.00482 * 12 2 1 14 14 O 1.21557 * 119.99730 * 359.97438 * 13 12 2 15 15 C 1.47805 * 120.00163 * 179.97438 * 13 12 2 16 16 N 1.32304 * 120.58704 * 359.97409 * 15 13 12 17 17 C 1.32717 * 121.20106 * 180.02562 * 16 15 13 18 18 C 1.35451 * 122.12538 * 0.02562 * 17 16 15 19 19 N 1.36277 * 120.51469 * 359.97438 * 18 17 16 20 20 C 1.36157 * 133.93711 * 180.02562 * 19 18 17 21 21 Br 1.89097 * 126.43557 * 0.03055 * 20 19 18 22 22 C 1.35425 * 107.13079 * 179.97438 * 20 19 18 23 23 N 1.33594 * 108.61075 * 359.97438 * 22 20 19 24 24 C 1.31827 * 109.15156 * 0.02562 * 23 22 20 25 25 H 1.09000 * 109.47286 * 300.00146 * 1 2 3 26 26 H 1.09002 * 109.47028 * 60.00093 * 1 2 3 27 27 H 1.09000 * 109.46855 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99987 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99996 * 264.99538 * 12 2 1 30 30 H 1.07997 * 118.93534 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.74091 * 179.97438 * 18 17 16 32 32 H 1.08005 * 125.69397 * 180.26599 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.1483 -2.2855 3.6040 10 1 3.1470 -0.1856 4.8162 11 1 1.1677 -1.5865 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 8 1.8577 1.1611 -2.4118 15 6 2.6404 -0.7148 -3.5638 16 7 2.9593 -1.9980 -3.5172 17 6 3.4038 -2.6354 -4.5931 18 6 3.5550 -2.0142 -5.7872 19 7 3.2498 -0.6931 -5.9235 20 6 3.2942 0.1844 -6.9636 21 35 3.8512 -0.1953 -8.7303 22 6 2.8634 1.3799 -6.4956 23 7 2.5598 1.2468 -5.2014 24 6 2.7848 0.0021 -4.8302 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7080 1.1610 3.4844 29 1 2.2491 -1.6317 -1.1525 30 1 3.6531 -3.6833 -4.5139 31 1 3.9204 -2.5703 -6.6380 32 1 2.7750 2.2881 -7.0734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769740525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:10 Heat of formation + Delta-G solvation = 55.598627 kcal Electronic energy + Delta-G solvation = -20395.076323 eV Core-core repulsion = 17017.078332 eV Total energy + Delta-G solvation = -3377.997991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.30723 -40.75402 -39.48726 -36.77933 -35.68113 -34.32198 -33.15083 -32.00135 -30.67209 -29.90016 -27.34830 -26.69078 -24.49710 -23.90131 -22.75432 -21.41291 -19.82422 -19.71335 -18.27558 -17.67868 -17.41602 -17.06333 -16.57585 -16.30296 -15.92918 -15.50823 -15.11375 -15.00406 -14.46034 -14.34227 -14.15094 -13.69934 -13.02542 -12.97396 -12.81661 -12.73083 -12.27428 -12.23065 -12.10839 -12.06536 -11.59977 -11.34283 -11.10124 -10.92112 -10.59702 -10.20479 -9.83455 -9.37174 -8.15957 -6.33478 -1.19049 -0.23728 -0.21197 1.16454 1.46313 1.47179 1.47778 1.56235 1.60603 2.01663 2.43363 2.47217 2.69568 2.93488 3.09330 3.14853 3.54846 3.83953 4.02946 4.07032 4.47356 4.72994 4.80536 4.93184 5.07886 5.10166 5.34668 5.40127 5.57348 5.66860 5.86780 6.08253 6.19916 6.44231 6.72003 6.85094 7.26944 7.42822 8.90960 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.002602 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.907610 B =10756.759416 C =11265.453471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.005 0.995 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.677 5.677 13 C 0.553 3.447 14 O -0.557 6.557 15 C 0.151 3.849 16 N -0.416 5.416 17 C 0.038 3.962 18 C 0.048 3.952 19 N -0.340 5.340 20 C -0.075 4.075 21 Br 0.073 6.927 22 C 0.074 3.926 23 N -0.481 5.481 24 C 0.195 3.805 25 H 0.071 0.929 26 H 0.012 0.988 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.411 0.589 30 H 0.240 0.760 31 H 0.225 0.775 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -10.067 -26.389 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.327 5.327 13 C 0.336 3.664 14 O -0.434 6.434 15 C -0.012 4.012 16 N -0.131 5.131 17 C -0.104 4.104 18 C -0.078 4.078 19 N -0.015 5.015 20 C -0.267 4.267 21 Br 0.155 6.845 22 C -0.082 4.082 23 N -0.201 5.201 24 C -0.053 4.053 25 H 0.090 0.910 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.247 0.753 30 H 0.256 0.744 31 H 0.242 0.758 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.856 -9.241 -25.742 28.457 hybrid contribution 0.378 -0.321 0.047 0.498 sum 8.234 -9.562 -25.695 28.626 Atomic orbital electron populations 1.21913 0.97888 0.99695 0.99819 1.18502 0.91417 0.92131 0.81207 0.97759 1.21535 1.32729 1.13648 0.90544 0.90749 1.25808 0.94820 0.95581 1.02297 1.70061 1.36892 1.23899 1.24652 0.85249 0.78113 0.78502 0.78180 1.18291 1.20967 1.20293 1.46140 1.63295 1.14555 1.08689 1.17750 0.79402 0.86151 0.83059 1.90823 1.51446 1.16399 1.84726 1.21915 0.99883 0.89643 0.89773 1.68128 1.07189 1.05579 1.32227 1.23107 0.98831 1.03393 0.85065 1.23746 0.99333 0.81051 1.03633 1.42942 1.39575 1.09677 1.09261 1.23192 1.20635 0.92462 0.90434 1.96818 1.89121 1.95205 1.03316 1.23462 0.96743 0.97905 0.90048 1.70781 1.21522 1.14578 1.13212 1.22453 1.04013 0.89359 0.89461 0.90992 0.96905 0.93883 0.92455 0.75280 0.74386 0.75807 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 2 C 0.27 14.57 2.56 44.25 0.11 14.69 16 3 H 0.00 0.28 7.58 -2.39 -0.02 0.27 16 4 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 5 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 8 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.68 -30.76 5.06 -449.03 -2.27 -33.04 16 13 C 0.55 25.21 7.78 86.77 0.68 25.88 16 14 O -0.56 -30.03 15.89 -3.89 -0.06 -30.09 16 15 C 0.15 5.41 6.97 43.69 0.30 5.71 16 16 N -0.42 -11.33 9.67 -181.38 -1.75 -13.09 16 17 C 0.04 0.60 11.01 83.91 0.92 1.52 16 18 C 0.05 0.70 10.98 83.36 0.92 1.62 16 19 N -0.34 -7.98 2.95 -341.68 -1.01 -8.99 16 20 C -0.07 -1.58 7.50 83.37 0.63 -0.95 16 21 Br 0.07 0.93 34.09 -20.37 -0.69 0.24 16 22 C 0.07 1.89 11.81 83.77 0.99 2.88 16 23 N -0.48 -17.47 10.74 -189.49 -2.03 -19.50 16 24 C 0.20 6.60 7.67 135.56 1.04 7.64 16 25 H 0.07 4.07 6.07 -2.39 -0.01 4.06 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.41 16.35 7.91 -92.71 -0.73 15.62 16 30 H 0.24 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.23 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.22 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -76.66 308.20 1.82 -74.84 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.45 Total: 13.62 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.92 Total: 24.52 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -6.83 Total: -127.50 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 35 Polarization: 0.93 SS G_CDS: -0.69 Total: 0.24 kcal Total: -76.66 1.82 -74.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769740525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.438 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds