Wall clock time and date at job start Tue Mar 31 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33755 * 2 1 4 4 O 1.20653 * 112.29905 * 180.26987 * 3 2 1 5 5 C 1.33493 * 113.15999 * 359.70981 * 4 3 2 6 6 C 1.50701 * 126.82750 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.47190 * 30.00613 * 6 5 4 8 8 F 1.39901 * 109.46726 * 150.00728 * 6 5 4 9 9 C 1.37359 * 106.34090 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56435 * 179.97438 * 9 5 4 11 11 O 1.21613 * 119.99746 * 90.00404 * 10 9 5 12 12 N 1.34777 * 120.00231 * 269.73004 * 10 9 5 13 13 S 1.65603 * 120.00013 * 180.27827 * 12 10 9 14 14 O 1.42094 * 104.27733 * 181.07052 * 13 12 10 15 15 O 1.42102 * 104.27443 * 308.92376 * 13 12 10 16 16 C 1.81397 * 104.44859 * 64.99476 * 13 12 10 17 17 C 1.53003 * 109.47004 * 180.02562 * 16 13 12 18 18 C 1.50694 * 109.47470 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99898 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00441 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00386 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46903 * 89.99420 * 22 20 18 24 24 H 1.48496 * 109.47451 * 209.99570 * 22 20 18 25 25 H 1.48500 * 109.46693 * 329.99917 * 22 20 18 26 26 H 1.08997 * 109.47081 * 270.18665 * 1 2 3 27 27 H 1.09000 * 109.47133 * 30.18758 * 1 2 3 28 28 H 1.08998 * 109.47192 * 150.18404 * 1 2 3 29 29 H 1.09004 * 109.47181 * 270.00121 * 6 5 4 30 30 H 0.97000 * 119.99736 * 0.27097 * 12 10 9 31 31 H 1.08996 * 109.47463 * 299.99576 * 16 13 12 32 32 H 1.09003 * 109.47168 * 60.00409 * 16 13 12 33 33 H 1.09004 * 109.46860 * 300.00001 * 17 16 13 34 34 H 1.09003 * 109.47419 * 59.99855 * 17 16 13 35 35 H 0.96997 * 120.00120 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0053 5 6 3.6494 -0.6009 -0.0035 6 6 4.9711 -1.3247 -0.0082 7 9 5.9318 -0.5456 0.6454 8 9 4.8344 -2.5493 0.6542 9 6 2.3991 -1.1697 0.0034 10 6 2.0400 -2.5992 0.0073 11 8 1.8968 -3.1873 1.0622 12 7 1.8649 -3.2533 -1.1580 13 16 1.4546 -4.8578 -1.1534 14 8 1.3831 -5.2051 -2.5294 15 8 2.4119 -5.4617 -0.2942 16 6 -0.1946 -4.9011 -0.3992 17 6 -0.6890 -6.3477 -0.3371 18 6 -2.0593 -6.3838 0.2889 19 1 -2.5307 -5.4666 0.6099 20 6 -2.7119 -7.5875 0.4509 21 7 -3.9075 -7.6190 0.9976 22 14 -1.8969 -9.1739 -0.1049 23 1 -1.0997 -9.7389 1.0132 24 1 -2.9395 -10.1498 -0.5121 25 1 -1.0037 -8.8939 -1.2577 26 1 -0.3633 0.0033 1.0276 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 5.2851 -1.5012 -1.0370 30 1 1.9790 -2.7843 -1.9993 31 1 -0.1437 -4.4913 0.6095 32 1 -0.8840 -4.3066 -0.9987 33 1 -0.7398 -6.7580 -1.3457 34 1 0.0005 -6.9420 0.2626 35 1 -4.3664 -8.4659 1.1119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:33 Heat of formation + Delta-G solvation = -142.391289 kcal Electronic energy + Delta-G solvation = -27603.531848 eV Core-core repulsion = 22982.730576 eV Total energy + Delta-G solvation = -4620.801272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.063 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.66841 -47.69007 -45.57197 -40.29529 -37.00072 -35.91271 -35.28967 -34.71000 -34.04085 -33.50770 -31.57296 -29.34923 -27.71349 -26.12559 -25.43670 -22.21075 -21.43083 -21.18418 -19.71279 -19.25331 -18.77890 -18.06234 -17.85371 -17.74496 -17.61777 -17.01282 -16.39770 -15.86263 -15.43876 -15.23070 -14.79885 -14.46627 -14.34101 -14.01272 -13.96441 -13.83549 -13.79834 -13.56560 -13.25328 -12.92523 -12.73776 -12.18212 -12.04512 -11.98624 -11.97098 -11.88639 -11.39800 -11.32398 -11.16977 -10.92606 -10.54361 -10.49814 -10.41381 -10.19491 -9.72431 -9.43299 -8.70286 -6.20496 -4.22569 0.12361 0.40198 1.25883 1.48356 1.72160 2.37117 3.03360 3.24315 3.31376 3.31913 3.34197 3.35727 3.64748 3.82075 3.96535 4.03346 4.25165 4.32060 4.36428 4.47203 4.56276 4.90548 5.06886 5.10336 5.15165 5.34209 5.40500 5.56391 6.13801 6.24765 6.71331 6.84721 6.99023 7.47794 7.48043 8.31177 8.79806 9.38341 10.91698 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003395 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.682608 B = 8245.017456 C = 9019.103398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.066 3.934 3 N -0.335 5.335 4 O 0.130 5.870 5 C -0.065 4.065 6 C 0.359 3.641 7 F -0.179 7.179 8 F -0.167 7.167 9 C -0.206 4.206 10 C 0.617 3.383 11 O -0.451 6.451 12 N -1.049 6.049 13 S 2.558 3.442 14 O -0.946 6.946 15 O -0.929 6.929 16 C -0.568 4.568 17 C -0.005 4.005 18 C -0.520 4.520 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.869 3.131 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.432 0.568 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.159 17.503 -6.457 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 N -0.037 5.037 4 O 0.064 5.936 5 C -0.130 4.130 6 C 0.304 3.696 7 F -0.160 7.160 8 F -0.148 7.148 9 C -0.215 4.215 10 C 0.399 3.601 11 O -0.319 6.319 12 N -0.810 5.810 13 S 2.658 3.342 14 O -0.937 6.937 15 O -0.919 6.919 16 C -0.702 4.702 17 C -0.045 4.045 18 C -0.559 4.559 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.695 3.305 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.170 0.830 30 H 0.267 0.733 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.322 17.583 -5.899 24.057 hybrid contribution -0.178 -0.969 -0.260 1.019 sum 15.144 16.614 -6.159 23.309 Atomic orbital electron populations 1.20412 0.83848 1.05047 1.05094 1.24903 0.99109 0.85207 1.00349 1.73660 0.88804 1.22797 1.18460 1.84642 1.21723 1.20414 1.66830 1.25207 0.96968 0.85984 1.04885 1.19681 0.79639 0.75175 0.95124 1.93098 1.64158 1.74882 1.83892 1.93213 1.95587 1.42494 1.83466 1.21941 0.92507 0.95500 1.11585 1.16667 0.75444 0.84563 0.83419 1.91086 1.44342 1.66796 1.29686 1.55457 1.76794 1.34222 1.14528 1.07011 0.79647 0.71986 0.75530 1.93616 1.88238 1.79389 1.32435 1.93634 1.58266 1.72021 1.67971 1.30192 1.16511 1.10139 1.13399 1.19447 0.99550 0.86700 0.98782 1.20782 0.98580 0.95565 1.41006 0.90284 1.24964 0.94683 0.99055 0.94270 1.69869 1.13163 1.26801 1.43278 0.86933 0.79821 0.83582 0.80171 1.19549 1.20688 1.18636 0.88558 0.89049 0.89037 0.82998 0.73305 0.84391 0.85175 0.94767 0.94999 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.49 36.01 0.38 -0.24 16 2 C 0.07 0.63 7.59 -79.77 -0.61 0.02 16 3 N -0.33 -3.40 12.01 34.78 0.42 -2.98 16 4 O 0.13 1.22 11.06 18.65 0.21 1.42 16 5 C -0.06 -0.58 7.13 -34.63 -0.25 -0.83 16 6 C 0.36 2.66 5.81 36.01 0.21 2.86 16 7 F -0.18 -1.49 17.32 2.25 0.04 -1.45 16 8 F -0.17 -1.90 16.11 2.25 0.04 -1.86 16 9 C -0.21 -2.15 6.19 -102.89 -0.64 -2.79 16 10 C 0.62 7.85 6.33 -12.53 -0.08 7.77 16 11 O -0.45 -7.52 15.21 -11.86 -0.18 -7.70 16 12 N -1.05 -11.66 5.60 30.43 0.17 -11.48 16 13 S 2.56 40.85 5.11 -107.50 -0.55 40.30 16 14 O -0.95 -16.26 18.08 -57.54 -1.04 -17.30 16 15 O -0.93 -18.10 17.04 -64.79 -1.10 -19.20 16 16 C -0.57 -10.04 5.82 37.16 0.22 -9.83 16 17 C -0.01 -0.12 4.05 -27.88 -0.11 -0.23 16 18 C -0.52 -14.20 9.66 -34.44 -0.33 -14.54 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 22 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.15 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.43 2.92 8.77 -34.48 -0.30 2.61 16 31 H 0.14 2.42 7.19 -51.93 -0.37 2.04 16 32 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 33 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 34 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -36.92 335.99 -5.29 -42.21 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.14 Total: -1.75 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.31 Total: -15.82 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.36 Total: -40.28 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -2.12 Total: -42.79 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 40.85 SS G_CDS: -0.55 Total: 40.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.92 -5.29 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.186 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds