Wall clock time and date at job start Tue Mar 31 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33755 * 2 1 4 4 O 1.20653 * 112.29905 * 180.26987 * 3 2 1 5 5 C 1.33493 * 113.15999 * 359.70981 * 4 3 2 6 6 C 1.50701 * 126.82750 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.47190 * 30.00613 * 6 5 4 8 8 F 1.39901 * 109.46726 * 150.00728 * 6 5 4 9 9 C 1.37359 * 106.34090 * 0.02562 * 5 4 3 10 10 C 1.47398 * 128.56435 * 179.97438 * 9 5 4 11 11 O 1.21613 * 119.99746 * 90.00404 * 10 9 5 12 12 N 1.34777 * 120.00231 * 269.73004 * 10 9 5 13 13 S 1.65603 * 120.00013 * 180.27827 * 12 10 9 14 14 O 1.42094 * 104.27733 * 181.07052 * 13 12 10 15 15 O 1.42102 * 104.27443 * 308.92376 * 13 12 10 16 16 C 1.81397 * 104.44859 * 64.99476 * 13 12 10 17 17 C 1.53003 * 109.47004 * 180.02562 * 16 13 12 18 18 C 1.50694 * 109.47470 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99898 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00441 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00386 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99938 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46903 * 89.99420 * 22 20 18 24 24 H 1.48496 * 109.47451 * 209.99570 * 22 20 18 25 25 H 1.48500 * 109.46693 * 329.99917 * 22 20 18 26 26 H 1.08997 * 109.47081 * 270.18665 * 1 2 3 27 27 H 1.09000 * 109.47133 * 30.18758 * 1 2 3 28 28 H 1.08998 * 109.47192 * 150.18404 * 1 2 3 29 29 H 1.09004 * 109.47181 * 270.00121 * 6 5 4 30 30 H 0.97000 * 119.99736 * 0.27097 * 12 10 9 31 31 H 1.08996 * 109.47463 * 299.99576 * 16 13 12 32 32 H 1.09003 * 109.47168 * 60.00409 * 16 13 12 33 33 H 1.09004 * 109.46860 * 300.00001 * 17 16 13 34 34 H 1.09003 * 109.47419 * 59.99855 * 17 16 13 35 35 H 0.96997 * 120.00120 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0053 5 6 3.6494 -0.6009 -0.0035 6 6 4.9711 -1.3247 -0.0082 7 9 5.9318 -0.5456 0.6454 8 9 4.8344 -2.5493 0.6542 9 6 2.3991 -1.1697 0.0034 10 6 2.0400 -2.5992 0.0073 11 8 1.8968 -3.1873 1.0622 12 7 1.8649 -3.2533 -1.1580 13 16 1.4546 -4.8578 -1.1534 14 8 1.3831 -5.2051 -2.5294 15 8 2.4119 -5.4617 -0.2942 16 6 -0.1946 -4.9011 -0.3992 17 6 -0.6890 -6.3477 -0.3371 18 6 -2.0593 -6.3838 0.2889 19 1 -2.5307 -5.4666 0.6099 20 6 -2.7119 -7.5875 0.4509 21 7 -3.9075 -7.6190 0.9976 22 14 -1.8969 -9.1739 -0.1049 23 1 -1.0997 -9.7389 1.0132 24 1 -2.9395 -10.1498 -0.5121 25 1 -1.0037 -8.8939 -1.2577 26 1 -0.3633 0.0033 1.0276 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 5.2851 -1.5012 -1.0370 30 1 1.9790 -2.7843 -1.9993 31 1 -0.1437 -4.4913 0.6095 32 1 -0.8840 -4.3066 -0.9987 33 1 -0.7398 -6.7580 -1.3457 34 1 0.0005 -6.9420 0.2626 35 1 -4.3664 -8.4659 1.1119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776115992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:33 Heat of formation + Delta-G solvation = -171.057107 kcal Electronic energy + Delta-G solvation = -27604.774891 eV Core-core repulsion = 22982.730576 eV Total energy + Delta-G solvation = -4622.044315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.063 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.33557 -48.37195 -46.31863 -41.37981 -38.38068 -37.31822 -36.17033 -35.92597 -35.65209 -34.25308 -33.51513 -29.97904 -28.42197 -27.95488 -26.29065 -23.35243 -23.00052 -21.91332 -20.92685 -20.15477 -19.60899 -19.41475 -18.80818 -18.57827 -18.41603 -18.28534 -17.49961 -17.07602 -16.73438 -16.51088 -16.21273 -15.81790 -15.33325 -15.17322 -14.83630 -14.70306 -14.65935 -14.41546 -14.24165 -14.03990 -13.85467 -13.82521 -13.44122 -13.32177 -13.11881 -13.04183 -12.79697 -12.68503 -12.41312 -12.22695 -12.06233 -11.88537 -11.69896 -11.29189 -11.23725 -11.14609 -10.83775 -8.35626 -6.41923 -1.16393 -0.37036 0.45829 0.53253 0.96623 1.28582 1.34346 1.35729 1.45026 2.30616 2.35961 2.40881 2.52557 2.82890 2.94340 2.98549 3.05625 3.26400 3.43805 3.60660 3.69416 3.79773 3.85832 3.97721 4.23202 4.51882 4.53873 4.62674 5.01591 5.03335 5.05459 5.38553 5.46194 6.01699 6.16546 6.64081 6.75842 7.22382 8.79804 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.003395 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.682608 B = 8245.017456 C = 9019.103398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.071 3.929 3 N -0.349 5.349 4 O 0.131 5.869 5 C -0.048 4.048 6 C 0.352 3.648 7 F -0.185 7.185 8 F -0.191 7.191 9 C -0.226 4.226 10 C 0.626 3.374 11 O -0.493 6.493 12 N -1.026 6.026 13 S 2.598 3.402 14 O -0.953 6.953 15 O -0.962 6.962 16 C -0.580 4.580 17 C -0.016 4.016 18 C -0.527 4.527 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.940 5.940 22 Si 0.924 3.076 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.243 1.243 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.211 0.789 30 H 0.454 0.546 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.044 0.956 34 H 0.030 0.970 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 18.186 -8.270 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 N -0.053 5.053 4 O 0.067 5.933 5 C -0.114 4.114 6 C 0.298 3.702 7 F -0.166 7.166 8 F -0.173 7.173 9 C -0.235 4.235 10 C 0.410 3.590 11 O -0.364 6.364 12 N -0.792 5.792 13 S 2.696 3.304 14 O -0.944 6.944 15 O -0.952 6.952 16 C -0.712 4.712 17 C -0.055 4.055 18 C -0.567 4.567 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.579 5.579 22 Si 0.746 3.254 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.166 1.166 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.227 0.773 30 H 0.294 0.706 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.986 18.287 -7.749 26.134 hybrid contribution -0.679 -1.012 0.321 1.260 sum 16.307 17.275 -7.428 24.890 Atomic orbital electron populations 1.20596 0.82504 1.06401 1.05522 1.25219 0.99957 0.84574 0.99323 1.73668 0.89074 1.23105 1.19441 1.84643 1.21545 1.20449 1.66653 1.25533 0.97304 0.85753 1.02792 1.20464 0.78716 0.73757 0.97243 1.93087 1.64165 1.74979 1.84321 1.93167 1.95672 1.44124 1.84290 1.21685 0.93525 0.94242 1.14085 1.16874 0.74130 0.85232 0.82787 1.91077 1.46223 1.67823 1.31230 1.54888 1.75947 1.32817 1.15596 1.05593 0.77957 0.72451 0.74374 1.93606 1.87994 1.80280 1.32474 1.93598 1.58855 1.73769 1.68980 1.30191 1.19240 1.07304 1.14501 1.19397 0.97214 0.90304 0.98606 1.21123 1.00523 0.94530 1.40475 0.93159 1.25865 0.95236 1.02793 0.94557 1.70002 1.14885 1.27844 1.45191 0.86044 0.79372 0.79423 0.80542 1.18979 1.19878 1.16577 0.88531 0.87334 0.88114 0.77276 0.70563 0.84655 0.82536 0.93817 0.95177 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 10.49 71.24 0.75 -0.43 16 2 C 0.07 1.23 7.59 45.16 0.34 1.57 16 3 N -0.35 -6.49 12.01 -44.79 -0.54 -7.02 16 4 O 0.13 2.20 11.06 76.99 0.85 3.06 16 5 C -0.05 -0.76 7.13 25.48 0.18 -0.57 16 6 C 0.35 4.30 5.81 71.24 0.41 4.72 16 7 F -0.18 -2.69 17.32 44.97 0.78 -1.91 16 8 F -0.19 -4.07 16.11 44.97 0.72 -3.35 16 9 C -0.23 -4.30 6.19 -18.74 -0.12 -4.42 16 10 C 0.63 14.97 6.33 86.66 0.55 15.51 16 11 O -0.49 -16.21 15.21 12.30 0.19 -16.03 16 12 N -1.03 -20.41 5.60 -175.90 -0.99 -21.40 16 13 S 2.60 78.06 5.11 -56.49 -0.29 77.77 16 14 O -0.95 -30.19 18.08 -127.65 -2.31 -32.49 16 15 O -0.96 -36.31 17.04 -120.72 -2.06 -38.36 16 16 C -0.58 -19.94 5.82 71.98 0.42 -19.52 16 17 C -0.02 -0.72 4.05 29.85 0.12 -0.60 16 18 C -0.53 -29.20 9.66 25.60 0.25 -28.96 16 19 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 20 C 0.01 0.81 5.47 84.65 0.46 1.27 16 21 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 22 Si 0.92 42.86 27.47 68.60 1.88 44.74 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.21 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.45 4.67 8.77 -96.74 -0.85 3.82 16 31 H 0.14 4.74 7.19 -2.39 -0.02 4.72 16 32 H 0.16 4.39 8.14 -2.39 -0.02 4.37 16 33 H 0.04 1.88 7.20 -2.39 -0.02 1.87 16 34 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.07 335.99 2.19 -78.88 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.27 Total: 4.39 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.37 Total: -31.43 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.22 Total: -85.27 kcal Atomic # 8 Polarization: -80.50 SS G_CDS: -3.33 Total: -83.83 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.50 Total: -5.26 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 78.06 SS G_CDS: -0.29 Total: 77.77 kcal Total: -81.07 2.19 -78.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.182 kcal (2) G-P(sol) polarization free energy of solvation -81.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds