Wall clock time and date at job start Tue Mar 31 2020 21:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46747 * 299.99290 * 3 2 1 6 6 H 1.48496 * 109.47222 * 59.99510 * 3 2 1 7 7 C 1.38952 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99835 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00216 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99836 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.34753 * 116.99681 * 179.97438 * 13 12 10 15 15 O 1.21506 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.47480 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.39816 * 120.08462 * 180.02562 * 16 14 13 18 18 C 1.38060 * 119.89851 * 180.02562 * 17 16 14 19 19 C 1.39604 * 119.98575 * 359.97438 * 18 17 16 20 20 C 1.38836 * 120.06309 * 359.97438 * 19 18 17 21 21 N 1.48019 * 119.88239 * 180.02562 * 20 19 18 22 22 O 1.21807 * 119.99932 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00380 * 359.97438 * 21 20 19 24 24 C 1.37779 * 120.22648 * 0.02562 * 20 19 18 25 25 O 1.36348 * 108.58032 * 179.97438 * 19 18 17 26 26 C 1.43963 * 105.53942 * 17.35492 * 25 19 18 27 27 O 1.36545 * 131.43324 * 179.97438 * 18 17 16 28 28 H 0.96999 * 119.99658 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00157 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47421 * 59.99588 * 12 10 9 31 31 H 1.08998 * 109.46875 * 299.98586 * 12 10 9 32 32 H 1.07998 * 120.05072 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99786 * 179.97438 * 24 20 19 34 34 H 1.09002 * 110.56611 * 214.18050 * 26 25 19 35 35 H 1.08995 * 110.56073 * 91.32947 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 8 2.1871 -5.9666 0.0017 14 6 1.6720 -7.2118 0.0019 15 8 0.4674 -7.3710 0.0019 16 6 2.5703 -8.3814 0.0020 17 6 2.0378 -9.6742 0.0016 18 6 2.8824 -10.7663 0.0023 19 6 4.2657 -10.5786 0.0029 20 6 4.7933 -9.2944 0.0022 21 7 6.2607 -9.1000 0.0022 22 8 6.7259 -7.9743 0.0011 23 8 7.0030 -10.0656 0.0033 24 6 3.9558 -8.2004 0.0015 25 8 4.8700 -11.8009 0.0041 26 6 3.8544 -12.7336 -0.4095 27 8 2.6253 -12.1074 0.0026 28 1 -0.4849 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8896 31 1 0.6161 -4.9205 0.8904 32 1 0.9675 -9.8182 0.0016 33 1 4.3702 -7.2031 0.0014 34 1 3.9847 -13.6906 0.0960 35 1 3.8732 -12.8653 -1.4913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778899667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:40 Heat of formation + Delta-G solvation = -140.607329 kcal Electronic energy + Delta-G solvation = -27956.542700 eV Core-core repulsion = 23311.462350 eV Total energy + Delta-G solvation = -4645.080350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.30626 -42.16904 -40.73565 -38.69237 -38.03305 -37.26755 -36.68129 -36.36856 -34.06450 -32.40979 -31.52666 -31.34372 -28.58873 -27.00197 -26.73707 -25.19716 -24.42275 -23.33773 -21.74009 -19.84166 -19.69280 -19.29353 -18.86020 -18.33755 -18.15550 -17.75894 -17.70284 -17.30840 -16.71419 -16.60108 -16.31754 -15.59333 -15.23550 -14.93098 -14.60418 -14.36410 -14.05476 -13.94688 -13.84831 -13.64685 -13.18295 -12.79959 -12.52141 -12.19022 -11.81282 -11.73344 -11.65977 -11.44317 -11.27384 -11.18605 -10.92775 -10.64401 -10.41491 -10.33661 -10.20234 -9.66172 -9.11461 -8.60418 -8.13393 -6.54529 -3.96586 -0.70483 -0.19831 0.81442 0.96055 1.60000 1.91267 2.16785 2.60080 2.77059 3.09351 3.22534 3.29823 3.31694 3.66655 3.70614 3.90545 3.97319 4.09705 4.14570 4.26920 4.42039 4.61925 4.71557 4.84941 5.00857 5.09550 5.20353 5.33972 5.40045 5.56542 5.90324 5.93763 6.12849 6.27358 7.40488 7.44423 7.44923 7.89064 8.42271 9.02636 9.33411 9.82438 10.62578 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.002372 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.687065 B =11800.555722 C =13162.096402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.108 0.892 9 N -0.551 5.551 10 C 0.436 3.564 11 O -0.573 6.573 12 C 0.062 3.938 13 O -0.316 6.316 14 C 0.514 3.486 15 O -0.496 6.496 16 C -0.106 4.106 17 C 0.008 3.992 18 C 0.024 3.976 19 C 0.133 3.867 20 C -0.041 4.041 21 N 0.029 4.971 22 O -0.139 6.139 23 O -0.145 6.145 24 C 0.013 3.987 25 O -0.273 6.273 26 C 0.207 3.793 27 O -0.291 6.291 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.148 0.852 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -24.572 -1.145 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.126 0.874 9 N -0.188 5.188 10 C 0.220 3.780 11 O -0.457 6.457 12 C -0.015 4.015 13 O -0.230 6.230 14 C 0.357 3.643 15 O -0.385 6.385 16 C -0.108 4.108 17 C -0.011 4.011 18 C -0.022 4.022 19 C 0.084 3.916 20 C -0.125 4.125 21 N 0.550 4.450 22 O -0.356 6.356 23 O -0.362 6.362 24 C -0.006 4.006 25 O -0.186 6.186 26 C 0.096 3.904 27 O -0.207 6.207 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.165 0.835 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.613 -24.743 -1.043 24.818 hybrid contribution -0.061 0.580 -0.037 0.584 sum 1.552 -24.163 -1.080 24.237 Atomic orbital electron populations 1.69621 1.06026 1.28468 1.49580 1.25326 0.95697 0.99936 0.96784 0.85736 0.79789 0.80656 0.77826 1.18990 1.20599 1.20601 1.19790 0.93557 0.81634 1.48109 0.87436 1.41700 1.09390 1.04066 1.63620 1.19242 0.88368 0.83955 0.86416 1.90589 1.13241 1.86653 1.55211 1.22896 0.90626 0.84001 1.03976 1.86579 1.40255 1.13531 1.82640 1.20361 0.86531 0.83606 0.73765 1.90886 1.15275 1.86850 1.45512 1.18564 0.91476 0.91417 1.09380 1.20392 1.01908 0.86965 0.91823 1.19166 0.90438 0.85722 1.06827 1.19577 0.90860 0.86410 0.94712 1.20032 0.81913 0.91085 1.19483 1.43281 1.02366 1.01013 0.98304 1.94647 1.78507 1.09761 1.52722 1.94591 1.56162 1.32557 1.52924 1.21394 0.91473 0.99811 0.87878 1.87618 1.35720 1.12975 1.82291 1.26013 0.70031 0.92909 1.01453 1.87506 1.34958 1.13244 1.84968 0.91630 0.77144 0.89043 0.89035 0.81038 0.79139 0.83512 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 13.05 55.50 0.72 -22.75 16 2 C 0.03 0.65 5.50 -17.46 -0.10 0.55 16 3 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -13.32 5.29 -10.96 -0.06 -13.38 16 10 C 0.44 9.89 7.86 -10.98 -0.09 9.81 16 11 O -0.57 -15.16 16.08 -14.11 -0.23 -15.39 16 12 C 0.06 1.07 5.95 36.01 0.21 1.28 16 13 O -0.32 -5.17 8.99 -47.32 -0.43 -5.60 16 14 C 0.51 6.97 7.89 34.50 0.27 7.24 16 15 O -0.50 -7.29 16.13 -19.27 -0.31 -7.60 16 16 C -0.11 -1.14 5.87 -104.99 -0.62 -1.75 16 17 C 0.01 0.07 9.60 -39.06 -0.38 -0.31 16 18 C 0.02 0.20 7.14 -39.14 -0.28 -0.08 16 19 C 0.13 1.32 6.76 -38.85 -0.26 1.06 16 20 C -0.04 -0.47 6.85 -79.89 -0.55 -1.02 16 21 N 0.03 0.39 4.45 33.99 0.15 0.54 16 22 O -0.14 -2.08 18.43 -29.46 -0.54 -2.62 16 23 O -0.15 -2.06 18.04 -34.59 -0.62 -2.69 16 24 C 0.01 0.15 9.11 -39.20 -0.36 -0.21 16 25 O -0.27 -2.41 10.50 -50.74 -0.53 -2.94 16 26 C 0.21 0.96 8.88 101.05 0.90 1.85 16 27 O -0.29 -2.09 11.41 -45.83 -0.52 -2.61 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.17 1.24 7.64 -52.49 -0.40 0.84 16 33 H 0.19 2.29 7.13 -52.49 -0.37 1.92 16 34 H 0.15 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -33.04 335.06 -6.02 -39.06 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.30 Total: 5.42 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.38 Total: 10.20 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.82 Total: -35.58 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -3.19 Total: -39.45 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.04 -6.02 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778899667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.547 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds