Wall clock time and date at job start Tue Mar 31 2020 21:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46747 * 299.99290 * 3 2 1 6 6 H 1.48496 * 109.47222 * 59.99510 * 3 2 1 7 7 C 1.38952 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99884 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99835 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00216 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99836 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.34753 * 116.99681 * 179.97438 * 13 12 10 15 15 O 1.21506 * 120.00271 * 359.97438 * 14 13 12 16 16 C 1.47480 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.39816 * 120.08462 * 180.02562 * 16 14 13 18 18 C 1.38060 * 119.89851 * 180.02562 * 17 16 14 19 19 C 1.39604 * 119.98575 * 359.97438 * 18 17 16 20 20 C 1.38836 * 120.06309 * 359.97438 * 19 18 17 21 21 N 1.48019 * 119.88239 * 180.02562 * 20 19 18 22 22 O 1.21807 * 119.99932 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00380 * 359.97438 * 21 20 19 24 24 C 1.37779 * 120.22648 * 0.02562 * 20 19 18 25 25 O 1.36348 * 108.58032 * 179.97438 * 19 18 17 26 26 C 1.43963 * 105.53942 * 17.35492 * 25 19 18 27 27 O 1.36545 * 131.43324 * 179.97438 * 18 17 16 28 28 H 0.96999 * 119.99658 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00157 * 359.97438 * 9 7 2 30 30 H 1.08991 * 109.47421 * 59.99588 * 12 10 9 31 31 H 1.08998 * 109.46875 * 299.98586 * 12 10 9 32 32 H 1.07998 * 120.05072 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.99786 * 179.97438 * 24 20 19 34 34 H 1.09002 * 110.56611 * 214.18050 * 26 25 19 35 35 H 1.08995 * 110.56073 * 91.32947 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 8 2.1871 -5.9666 0.0017 14 6 1.6720 -7.2118 0.0019 15 8 0.4674 -7.3710 0.0019 16 6 2.5703 -8.3814 0.0020 17 6 2.0378 -9.6742 0.0016 18 6 2.8824 -10.7663 0.0023 19 6 4.2657 -10.5786 0.0029 20 6 4.7933 -9.2944 0.0022 21 7 6.2607 -9.1000 0.0022 22 8 6.7259 -7.9743 0.0011 23 8 7.0030 -10.0656 0.0033 24 6 3.9558 -8.2004 0.0015 25 8 4.8700 -11.8009 0.0041 26 6 3.8544 -12.7336 -0.4095 27 8 2.6253 -12.1074 0.0026 28 1 -0.4849 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8896 31 1 0.6161 -4.9205 0.8904 32 1 0.9675 -9.8182 0.0016 33 1 4.3702 -7.2031 0.0014 34 1 3.9847 -13.6906 0.0960 35 1 3.8732 -12.8653 -1.4913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778899667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:39 Heat of formation + Delta-G solvation = -161.887141 kcal Electronic energy + Delta-G solvation = -27957.465462 eV Core-core repulsion = 23311.462350 eV Total energy + Delta-G solvation = -4646.003112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.02332 -43.13284 -41.86962 -40.15440 -39.24769 -37.94989 -37.73143 -37.58781 -36.02594 -33.42025 -33.26539 -32.22070 -30.03477 -27.93033 -27.36214 -26.66346 -25.64563 -24.19005 -22.76762 -21.45133 -20.81277 -20.18932 -20.08312 -19.73369 -19.06791 -18.74263 -18.65787 -18.22193 -17.83569 -17.72221 -17.47836 -16.90825 -16.44772 -15.97038 -15.81427 -15.76124 -15.51832 -14.88676 -14.63358 -14.48993 -14.44895 -13.91377 -13.78417 -13.56954 -13.53397 -12.94301 -12.84280 -12.50473 -12.45166 -12.43463 -12.39515 -12.11201 -12.04367 -11.94693 -11.57316 -11.00933 -10.50721 -10.10142 -9.79490 -8.51819 -6.01622 -1.60066 -1.06054 -0.12804 0.01429 0.79632 0.96305 1.25654 1.35375 1.44783 1.58726 1.84411 1.89155 1.95416 2.29628 2.56392 2.81166 3.09968 3.14304 3.22324 3.33447 3.49010 3.68086 3.82427 3.98685 4.04608 4.17039 4.17295 4.23980 4.27652 4.48843 4.51475 4.96341 5.06750 5.39013 5.40353 5.90104 6.28746 6.31833 6.50523 7.04791 7.41551 7.95291 8.65284 Molecular weight = 338.08amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.002372 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.687065 B =11800.555722 C =13162.096402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.083 0.917 9 N -0.558 5.558 10 C 0.435 3.565 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.521 3.479 15 O -0.504 6.504 16 C -0.108 4.108 17 C 0.027 3.973 18 C 0.039 3.961 19 C 0.140 3.860 20 C -0.053 4.053 21 N 0.031 4.969 22 O -0.183 6.183 23 O -0.143 6.143 24 C 0.014 3.986 25 O -0.287 6.287 26 C 0.197 3.803 27 O -0.291 6.291 28 H 0.280 0.720 29 H 0.401 0.599 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -26.679 -1.309 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.101 0.899 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.503 6.503 12 C -0.003 4.003 13 O -0.251 6.251 14 C 0.366 3.634 15 O -0.394 6.394 16 C -0.110 4.110 17 C 0.008 3.992 18 C -0.007 4.007 19 C 0.091 3.909 20 C -0.138 4.138 21 N 0.548 4.452 22 O -0.392 6.392 23 O -0.364 6.364 24 C -0.005 4.005 25 O -0.200 6.200 26 C 0.088 3.912 27 O -0.207 6.207 28 H 0.090 0.910 29 H 0.236 0.764 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.210 0.790 33 H 0.193 0.807 34 H 0.201 0.799 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.190 -26.815 -1.211 26.843 hybrid contribution 0.351 0.954 0.004 1.016 sum 0.542 -25.861 -1.207 25.895 Atomic orbital electron populations 1.69668 1.06838 1.29603 1.49364 1.26073 0.96562 1.02459 0.95783 0.84841 0.78108 0.76840 0.78400 1.19682 1.19497 1.19532 1.19727 0.92898 0.83398 1.50389 0.89861 1.41727 1.09603 1.04133 1.64091 1.20139 0.88119 0.85443 0.84132 1.90561 1.15474 1.87675 1.56584 1.22657 0.89785 0.81618 1.06282 1.86572 1.40676 1.14490 1.83315 1.20594 0.86778 0.83048 0.73010 1.90881 1.15629 1.86752 1.46128 1.18287 0.90487 0.91262 1.11005 1.20477 1.02824 0.85888 0.89980 1.19081 0.89409 0.86503 1.05740 1.19654 0.91568 0.86294 0.93395 1.19948 0.80073 0.92118 1.21633 1.43559 1.03425 1.00583 0.97612 1.94649 1.79393 1.10182 1.54938 1.94551 1.57180 1.32392 1.52253 1.21189 0.91837 0.99216 0.88261 1.87620 1.37482 1.12889 1.82018 1.26691 0.67935 0.92810 1.03725 1.87525 1.36130 1.12097 1.84907 0.91006 0.76445 0.86591 0.86644 0.78992 0.80724 0.79881 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.57 13.05 21.66 0.28 -47.29 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 3 Si 0.99 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -18.41 9.68 84.04 0.81 -17.60 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -27.49 5.29 -306.98 -1.62 -29.11 16 10 C 0.44 20.13 7.86 87.66 0.69 20.82 16 11 O -0.62 -33.84 16.08 15.73 0.25 -33.59 16 12 C 0.07 2.46 5.95 71.24 0.42 2.88 16 13 O -0.34 -10.92 8.99 -50.24 -0.45 -11.37 16 14 C 0.52 13.50 7.89 70.26 0.55 14.05 16 15 O -0.50 -13.74 16.13 19.82 0.32 -13.42 16 16 C -0.11 -2.19 5.87 -20.10 -0.12 -2.30 16 17 C 0.03 0.39 9.60 22.61 0.22 0.61 16 18 C 0.04 0.55 7.14 22.56 0.16 0.71 16 19 C 0.14 2.53 6.76 22.74 0.15 2.68 16 20 C -0.05 -1.21 6.85 36.41 0.25 -0.96 16 21 N 0.03 0.88 4.45 -46.38 -0.21 0.68 16 22 O -0.18 -5.86 18.43 18.88 0.35 -5.52 16 23 O -0.14 -4.07 18.04 23.79 0.43 -3.64 16 24 C 0.01 0.32 9.11 22.52 0.21 0.53 16 25 O -0.29 -4.34 10.50 -68.96 -0.72 -5.06 16 26 C 0.20 1.05 8.88 113.37 1.01 2.06 16 27 O -0.29 -3.07 11.41 -76.58 -0.87 -3.94 16 28 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 29 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 30 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.19 2.08 7.64 -2.91 -0.02 2.05 16 33 H 0.18 4.54 7.13 -2.91 -0.02 4.52 16 34 H 0.18 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -72.98 335.06 5.08 -67.90 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.48 Total: 17.15 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 4.82 Total: 23.52 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.55 Total: -75.73 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -0.70 Total: -76.54 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -72.98 5.08 -67.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778899667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.984 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds