Wall clock time and date at job start Tue Mar 31 2020 21:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00085 * 2 1 4 4 H 1.48503 * 109.47351 * 270.00078 * 3 2 1 5 5 H 1.48504 * 109.47449 * 29.99895 * 3 2 1 6 6 H 1.48495 * 109.47396 * 149.99880 * 3 2 1 7 7 C 1.38796 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00158 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99785 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47038 * 180.02562 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72090 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 N 1.30977 * 126.43318 * 89.71283 * 15 14 13 17 17 C 1.35231 * 105.57623 * 179.91635 * 16 15 14 18 18 C 1.48370 * 126.41635 * 180.10999 * 17 16 15 19 19 C 1.39345 * 120.13222 * 359.97438 * 18 17 16 20 20 C 1.37986 * 119.90147 * 179.77312 * 19 18 17 21 21 C 1.38372 * 120.17772 * 0.50716 * 20 19 18 22 22 C 1.38232 * 120.27375 * 359.74261 * 21 20 19 23 23 C 1.38311 * 120.09130 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.08594 * 179.97438 * 23 22 21 25 25 N 1.30784 * 107.16670 * 0.34694 * 17 16 15 26 26 O 1.21286 * 110.09556 * 359.78302 * 25 17 16 27 27 H 0.96998 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47767 * 59.99734 * 10 9 7 29 29 H 1.09001 * 109.46982 * 299.99741 * 10 9 7 30 30 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 31 31 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 32 32 H 1.07999 * 120.05314 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.91239 * 180.25403 * 20 19 18 34 34 H 1.08004 * 119.86365 * 179.76701 * 21 20 19 35 35 H 1.08001 * 119.95114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0021 12 8 6.3411 -2.2999 -0.0021 13 8 6.0438 -4.4896 0.0026 14 6 7.4865 -4.6533 -0.0025 15 6 7.8255 -6.1216 -0.0005 16 7 7.9912 -6.8832 -1.0532 17 6 8.2815 -8.1124 -0.5700 18 6 8.5582 -9.3307 -1.3704 19 6 8.5325 -9.2738 -2.7625 20 6 8.7952 -10.4086 -3.5022 21 6 9.0737 -11.6051 -2.8654 22 6 9.0960 -11.6710 -1.4848 23 6 8.8391 -10.5393 -0.7323 24 9 8.8604 -10.6039 0.6169 25 7 8.2676 -8.0274 0.7350 26 8 8.0077 -6.8929 1.0760 27 1 -0.4849 0.8401 -0.0004 28 1 3.6440 -3.4315 -0.8893 29 1 3.6433 -3.4317 0.8907 30 1 7.9020 -4.1854 -0.8950 31 1 7.9087 -4.1820 0.8850 32 1 8.3113 -8.3420 -3.2617 33 1 8.7794 -10.3638 -4.5812 34 1 9.2749 -12.4910 -3.4494 35 1 9.3144 -12.6074 -0.9932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781157647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:33 Heat of formation + Delta-G solvation = -24.407048 kcal Electronic energy + Delta-G solvation = -24429.867440 eV Core-core repulsion = 20244.951573 eV Total energy + Delta-G solvation = -4184.915867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.33646 -45.98390 -40.43735 -39.51880 -36.78698 -36.24546 -33.75964 -32.53388 -31.55039 -31.00797 -30.25406 -28.13302 -25.72507 -25.38139 -23.80786 -22.99538 -21.82093 -21.37321 -18.61780 -18.61606 -18.02869 -17.82133 -17.41009 -16.89862 -16.73741 -16.48343 -16.07148 -16.04893 -15.09133 -15.01377 -14.55085 -14.39909 -14.19161 -13.94294 -13.70852 -13.24401 -13.00891 -12.91950 -12.73401 -12.44174 -12.32261 -12.21500 -11.83614 -11.50852 -11.38423 -11.08941 -10.99353 -10.98003 -10.79522 -10.39043 -9.92732 -9.50160 -9.17550 -9.09719 -8.69134 -7.08642 -6.37362 -4.12819 0.06796 0.60824 0.65476 1.80602 2.11170 2.29927 2.51516 2.86409 3.07573 3.11538 3.26205 3.39656 3.41621 3.47634 3.66507 4.17325 4.22392 4.23824 4.47563 4.57163 4.62384 4.66021 4.77818 4.79821 4.97744 5.01320 5.12500 5.20610 5.38514 5.48600 5.51566 5.55475 5.69765 5.80814 5.86154 6.20120 6.22215 7.66095 7.75680 7.85437 8.34278 9.07208 10.71573 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.001865 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.249733 B =15006.703461 C =15305.066704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.092 0.908 9 S -0.136 6.136 10 C -0.099 4.099 11 C 0.487 3.513 12 O -0.481 6.481 13 O -0.353 6.353 14 C 0.161 3.839 15 C 0.189 3.811 16 N -0.447 5.447 17 C 0.205 3.795 18 C -0.058 4.058 19 C -0.046 4.046 20 C -0.133 4.133 21 C -0.071 4.071 22 C -0.158 4.158 23 C 0.133 3.867 24 F -0.121 7.121 25 N -0.355 5.355 26 O 0.102 5.898 27 H 0.272 0.728 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.309 -22.113 -4.958 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.090 5.910 10 C -0.247 4.247 11 C 0.328 3.672 12 O -0.366 6.366 13 O -0.270 6.270 14 C 0.085 3.915 15 C -0.032 4.032 16 N -0.182 5.182 17 C -0.065 4.065 18 C -0.060 4.060 19 C -0.066 4.066 20 C -0.151 4.151 21 C -0.090 4.090 22 C -0.177 4.177 23 C 0.112 3.888 24 F -0.099 7.099 25 N -0.057 5.057 26 O 0.036 5.964 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.280 -21.611 -4.779 30.704 hybrid contribution -0.758 -0.150 0.325 0.838 sum 20.522 -21.761 -4.454 30.242 Atomic orbital electron populations 1.69932 1.05879 1.27932 1.47377 1.24701 0.94477 0.98972 0.93056 0.86745 0.81829 0.83305 0.80001 1.19093 1.19755 1.15941 1.22247 0.87536 0.97822 1.59545 0.88967 1.84815 1.10308 0.98248 1.97590 1.23052 0.88913 1.04979 1.07769 1.23367 0.92185 0.79438 0.72192 1.90703 1.58595 1.43269 1.44007 1.86561 1.22557 1.32578 1.85338 1.20961 0.81086 0.82421 1.07023 1.28040 0.97237 0.97336 0.80623 1.71971 1.17382 1.00337 1.28466 1.23633 1.02016 0.93331 0.87493 1.17385 1.08056 0.87577 0.93015 1.21198 0.94588 1.00038 0.90750 1.21232 1.00787 0.92122 1.00950 1.21245 0.95785 0.98530 0.93406 1.21135 1.04241 0.97654 0.94660 1.17695 1.00057 0.93508 0.77555 1.91588 1.93301 1.96830 1.28220 1.75091 1.18133 0.97735 1.14717 1.85348 1.61744 1.13810 1.35457 0.91759 0.86821 0.86783 0.85963 0.86751 0.83496 0.84231 0.84272 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.97 55.49 0.78 -24.86 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 20.82 27.74 -169.99 -4.71 16.10 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 7 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.21 18.55 -107.50 -1.99 -5.20 16 10 C -0.10 -1.80 6.27 36.01 0.23 -1.58 16 11 C 0.49 7.92 7.98 36.01 0.29 8.21 16 12 O -0.48 -8.80 15.61 -18.75 -0.29 -9.09 16 13 O -0.35 -4.79 10.20 -39.27 -0.40 -5.19 16 14 C 0.16 1.67 6.09 36.00 0.22 1.89 16 15 C 0.19 2.17 8.14 -12.99 -0.11 2.07 16 16 N -0.45 -5.55 11.26 -9.88 -0.11 -5.66 16 17 C 0.20 2.60 7.79 -156.11 -1.22 1.38 16 18 C -0.06 -0.61 5.88 -104.83 -0.62 -1.22 16 19 C -0.05 -0.37 9.70 -39.26 -0.38 -0.75 16 20 C -0.13 -0.72 10.03 -39.62 -0.40 -1.12 16 21 C -0.07 -0.35 10.04 -39.53 -0.40 -0.74 16 22 C -0.16 -1.05 10.02 -39.56 -0.40 -1.44 16 23 C 0.13 1.31 7.28 -39.07 -0.28 1.03 16 24 F -0.12 -1.43 15.82 2.25 0.04 -1.39 16 25 N -0.35 -4.79 10.87 30.97 0.34 -4.46 16 26 O 0.10 1.25 11.29 18.04 0.20 1.46 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 29 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 30 H 0.12 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.11 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.15 1.10 7.88 -52.49 -0.41 0.69 16 33 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 34 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -33.09 341.95 -6.81 -39.90 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -2.95 Total: -2.98 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.85 Total: -3.77 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 1.00 Total: -34.98 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.49 Total: -12.83 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -1.99 Total: -5.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.09 -6.81 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781157647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.492 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds