Wall clock time and date at job start Tue Mar 31 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86795 * 120.00085 * 2 1 4 4 H 1.48503 * 109.47351 * 270.00078 * 3 2 1 5 5 H 1.48504 * 109.47449 * 29.99895 * 3 2 1 6 6 H 1.48495 * 109.47396 * 149.99880 * 3 2 1 7 7 C 1.38796 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00158 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.80998 * 99.99785 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47038 * 180.02562 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72090 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 N 1.30977 * 126.43318 * 89.71283 * 15 14 13 17 17 C 1.35231 * 105.57623 * 179.91635 * 16 15 14 18 18 C 1.48370 * 126.41635 * 180.10999 * 17 16 15 19 19 C 1.39345 * 120.13222 * 359.97438 * 18 17 16 20 20 C 1.37986 * 119.90147 * 179.77312 * 19 18 17 21 21 C 1.38372 * 120.17772 * 0.50716 * 20 19 18 22 22 C 1.38232 * 120.27375 * 359.74261 * 21 20 19 23 23 C 1.38311 * 120.09130 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.08594 * 179.97438 * 23 22 21 25 25 N 1.30784 * 107.16670 * 0.34694 * 17 16 15 26 26 O 1.21286 * 110.09556 * 359.78302 * 25 17 16 27 27 H 0.96998 * 119.99494 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47767 * 59.99734 * 10 9 7 29 29 H 1.09001 * 109.46982 * 299.99741 * 10 9 7 30 30 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 31 31 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 32 32 H 1.07999 * 120.05314 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.91239 * 180.25403 * 20 19 18 34 34 H 1.08004 * 119.86365 * 179.76701 * 21 20 19 35 35 H 1.08001 * 119.95114 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0021 12 8 6.3411 -2.2999 -0.0021 13 8 6.0438 -4.4896 0.0026 14 6 7.4865 -4.6533 -0.0025 15 6 7.8255 -6.1216 -0.0005 16 7 7.9912 -6.8832 -1.0532 17 6 8.2815 -8.1124 -0.5700 18 6 8.5582 -9.3307 -1.3704 19 6 8.5325 -9.2738 -2.7625 20 6 8.7952 -10.4086 -3.5022 21 6 9.0737 -11.6051 -2.8654 22 6 9.0960 -11.6710 -1.4848 23 6 8.8391 -10.5393 -0.7323 24 9 8.8604 -10.6039 0.6169 25 7 8.2676 -8.0274 0.7350 26 8 8.0077 -6.8929 1.0760 27 1 -0.4849 0.8401 -0.0004 28 1 3.6440 -3.4315 -0.8893 29 1 3.6433 -3.4317 0.8907 30 1 7.9020 -4.1854 -0.8950 31 1 7.9087 -4.1820 0.8850 32 1 8.3113 -8.3420 -3.2617 33 1 8.7794 -10.3638 -4.5812 34 1 9.2749 -12.4910 -3.4494 35 1 9.3144 -12.6074 -0.9932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781157647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:32 Heat of formation + Delta-G solvation = -45.169846 kcal Electronic energy + Delta-G solvation = -24430.767782 eV Core-core repulsion = 20244.951573 eV Total energy + Delta-G solvation = -4185.816209 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.08778 -46.92440 -41.68520 -40.06916 -37.97757 -37.16615 -34.68137 -34.65646 -32.18256 -31.78522 -31.39776 -29.16389 -27.86704 -26.17298 -24.59138 -23.62619 -22.87521 -22.31779 -20.03394 -19.57807 -19.33787 -18.71520 -18.52475 -17.93675 -17.73614 -17.28955 -17.09786 -16.96716 -16.80633 -16.00603 -15.69456 -15.56319 -15.17514 -14.90841 -14.84919 -14.39495 -14.06957 -13.97118 -13.87286 -13.56149 -13.33296 -13.00990 -12.99860 -12.90672 -12.78831 -12.57303 -12.23634 -12.03775 -11.98724 -11.83700 -11.61747 -11.16653 -10.62372 -10.07111 -9.80288 -9.04480 -8.50995 -6.24618 -0.66265 -0.23230 0.08646 0.73168 0.99044 1.08052 1.26700 1.34406 1.47487 1.54946 1.89158 2.13823 2.25218 2.53474 2.56400 2.65943 2.87336 3.05535 3.41673 3.64321 3.68240 3.83927 3.98731 4.06675 4.11749 4.17852 4.22843 4.30912 4.42349 4.47349 4.72786 4.94790 4.97173 4.99185 5.21371 5.31681 5.70865 5.73730 6.13350 6.48388 6.75219 6.92740 8.61232 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.001865 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.249733 B =15006.703461 C =15305.066704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.231 1.231 7 C -0.533 4.533 8 H 0.064 0.936 9 S -0.153 6.153 10 C -0.093 4.093 11 C 0.504 3.496 12 O -0.501 6.501 13 O -0.351 6.351 14 C 0.161 3.839 15 C 0.192 3.808 16 N -0.457 5.457 17 C 0.201 3.799 18 C -0.090 4.090 19 C -0.054 4.054 20 C -0.123 4.123 21 C -0.056 4.056 22 C -0.155 4.155 23 C 0.104 3.896 24 F -0.142 7.142 25 N -0.380 5.380 26 O 0.097 5.903 27 H 0.277 0.723 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.141 -23.273 -6.447 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.154 1.154 7 C -0.681 4.681 8 H 0.082 0.918 9 S 0.074 5.926 10 C -0.241 4.241 11 C 0.345 3.655 12 O -0.388 6.388 13 O -0.267 6.267 14 C 0.086 3.914 15 C -0.029 4.029 16 N -0.192 5.192 17 C -0.068 4.068 18 C -0.093 4.093 19 C -0.074 4.074 20 C -0.141 4.141 21 C -0.074 4.074 22 C -0.174 4.174 23 C 0.083 3.917 24 F -0.120 7.120 25 N -0.085 5.085 26 O 0.034 5.966 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.190 0.810 34 H 0.197 0.803 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 23.117 -22.785 -6.261 33.057 hybrid contribution -1.264 -0.048 0.696 1.444 sum 21.853 -22.833 -5.565 32.092 Atomic orbital electron populations 1.70022 1.07438 1.29138 1.48711 1.25596 0.95297 1.02430 0.92762 0.85859 0.80801 0.79336 0.80335 1.18528 1.18580 1.15421 1.22428 0.90001 0.96875 1.58780 0.91757 1.84582 1.06832 1.03504 1.97695 1.22966 0.91059 1.00861 1.09206 1.22702 0.91057 0.79902 0.71792 1.90704 1.58846 1.44068 1.45176 1.86485 1.24800 1.30717 1.84736 1.21328 0.79039 0.81860 1.09214 1.28246 0.96725 0.97568 0.80386 1.71974 1.17880 1.00516 1.28831 1.24143 1.01080 0.94126 0.87476 1.17665 1.10396 0.87183 0.94029 1.21352 0.94975 1.01232 0.89838 1.21653 0.98747 0.91244 1.02420 1.21746 0.93274 0.99658 0.92762 1.21482 1.03123 0.97267 0.95495 1.18105 1.01957 0.94612 0.77034 1.91527 1.93728 1.96969 1.29790 1.75079 1.19658 0.98229 1.15487 1.85317 1.61934 1.13706 1.35642 0.91305 0.85525 0.85439 0.84273 0.84235 0.83570 0.81029 0.80304 0.81830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 13.97 21.65 0.30 -54.10 16 2 C 0.04 2.54 5.50 84.86 0.47 3.01 16 3 Si 0.92 42.74 27.74 68.60 1.90 44.64 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.23 -10.50 6.74 99.48 0.67 -9.83 16 7 C -0.53 -29.71 10.04 67.95 0.68 -29.03 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 9 S -0.15 -7.09 18.55 -56.49 -1.05 -8.14 16 10 C -0.09 -3.25 6.27 71.24 0.45 -2.81 16 11 C 0.50 15.48 7.98 71.24 0.57 16.05 16 12 O -0.50 -17.41 15.61 21.98 0.34 -17.06 16 13 O -0.35 -8.89 10.20 -51.46 -0.53 -9.42 16 14 C 0.16 3.06 6.09 71.23 0.43 3.49 16 15 C 0.19 4.31 8.14 88.36 0.72 5.03 16 16 N -0.46 -11.30 11.26 -302.49 -3.41 -14.71 16 17 C 0.20 5.21 7.79 137.27 1.07 6.28 16 18 C -0.09 -1.90 5.88 -20.00 -0.12 -2.02 16 19 C -0.05 -0.80 9.70 22.48 0.22 -0.58 16 20 C -0.12 -0.95 10.03 22.24 0.22 -0.73 16 21 C -0.06 -0.34 10.04 22.30 0.22 -0.12 16 22 C -0.16 -1.74 10.02 22.29 0.22 -1.52 16 23 C 0.10 2.05 7.28 22.60 0.16 2.21 16 24 F -0.14 -3.49 15.82 44.97 0.71 -2.78 16 25 N -0.38 -10.64 10.87 -59.11 -0.64 -11.28 16 26 O 0.10 2.42 11.29 74.61 0.84 3.27 16 27 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.13 4.15 8.14 -2.39 -0.02 4.13 16 29 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.14 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.14 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.15 2.08 7.88 -2.91 -0.02 2.06 16 33 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 35 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -73.32 341.95 4.92 -68.40 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.12 Total: 1.91 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.32 Total: -0.73 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.75 Total: -80.08 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.66 Total: -23.21 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.71 Total: -2.78 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.64 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.05 Total: -8.14 kcal Total: -73.32 4.92 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781157647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.230 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds