Wall clock time and date at job start Tue Mar 31 2020 21:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00038 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99624 * 3 2 1 5 5 H 1.48494 * 109.46998 * 29.99641 * 3 2 1 6 6 H 1.48506 * 109.47246 * 149.99694 * 3 2 1 7 7 C 1.37879 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00392 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00134 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00145 * 180.02562 * 10 9 7 12 12 O 1.21365 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.49327 * 119.99957 * 179.97438 * 11 10 9 14 14 O 1.21390 * 119.99999 * 359.72452 * 13 11 10 15 15 N 1.34776 * 119.99957 * 180.02562 * 13 11 10 16 16 C 1.39995 * 120.00260 * 174.67589 * 15 13 11 17 17 C 1.39033 * 120.04876 * 270.82805 * 16 15 13 18 18 F 1.35105 * 120.02113 * 359.97202 * 17 16 15 19 19 C 1.38464 * 119.94825 * 179.72206 * 17 16 15 20 20 F 1.35103 * 119.97521 * 180.27692 * 19 17 16 21 21 C 1.38616 * 120.05330 * 0.52528 * 19 17 16 22 22 F 1.35105 * 119.95796 * 179.74953 * 21 19 17 23 23 C 1.38622 * 120.09681 * 359.76793 * 21 19 17 24 24 F 1.35101 * 119.98030 * 179.97438 * 23 21 19 25 25 C 1.38472 * 120.04794 * 359.95822 * 23 21 19 26 26 F 1.35095 * 120.02826 * 180.02562 * 25 23 21 27 27 H 0.96997 * 119.99977 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46564 * 60.00292 * 9 7 2 29 29 H 1.09004 * 109.47228 * 300.00616 * 9 7 2 30 30 H 0.97003 * 119.99489 * 0.02562 * 10 9 7 31 31 H 0.97003 * 120.00130 * 354.67465 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1136 -1.8991 0.0006 13 6 5.8227 -4.2294 0.0008 14 8 5.0338 -5.1521 0.0064 15 7 7.1477 -4.4757 0.0014 16 6 7.6154 -5.7904 0.1146 17 6 7.8515 -6.3397 1.3698 18 9 7.6303 -5.6049 2.4817 19 6 8.3085 -7.6422 1.4794 20 9 8.5327 -8.1784 2.6991 21 6 8.5410 -8.3947 0.3388 22 9 8.9917 -9.6636 0.4479 23 6 8.3121 -7.8470 -0.9139 24 9 8.5400 -8.5823 -2.0241 25 6 7.8496 -6.5468 -1.0282 26 9 7.6262 -6.0136 -2.2493 27 1 -0.4850 0.8400 -0.0004 28 1 3.8751 -0.6797 0.8895 29 1 3.8745 -0.6808 -0.8905 30 1 3.3695 -3.3126 0.0001 31 1 7.7775 -3.7420 -0.0766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787595905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:06 Heat of formation + Delta-G solvation = -245.513631 kcal Electronic energy + Delta-G solvation = -28447.850089 eV Core-core repulsion = 23145.276405 eV Total energy + Delta-G solvation = -5302.573684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.63161 -50.35106 -49.92257 -49.38506 -49.00656 -40.96321 -39.33717 -38.14400 -35.57710 -34.45613 -32.47937 -30.82598 -30.27348 -28.48563 -25.59448 -24.20559 -23.61982 -21.91687 -20.48343 -19.83908 -19.60380 -19.34827 -18.77831 -17.87251 -17.36779 -17.36669 -16.99520 -16.83643 -16.74602 -16.65293 -16.22238 -15.86539 -15.66032 -15.59639 -15.51235 -15.16814 -15.08494 -15.03806 -14.35638 -14.15784 -13.69491 -13.41409 -13.25506 -12.70947 -12.51114 -12.35470 -12.07302 -11.72018 -11.15828 -10.88562 -10.26304 -10.09080 -9.86503 -9.62591 -9.53089 -9.46883 -8.92616 -8.50812 -6.29992 -4.34580 -0.49861 -0.39537 1.34707 1.73251 1.98688 2.27394 2.77941 2.90100 3.17805 3.19346 3.25378 3.27011 3.32108 3.49999 3.53998 3.94560 4.09505 4.23841 4.43356 4.56735 4.76463 4.91907 5.04117 5.42135 5.79993 6.46107 6.57759 6.77540 6.83903 7.16521 7.38498 7.85282 8.25960 8.33197 8.69235 9.26824 10.81693 Molecular weight = 338.05amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.002631 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.079384 B =10637.791251 C =11082.427823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.660 5.660 11 C 0.499 3.501 12 O -0.532 6.532 13 C 0.519 3.481 14 O -0.494 6.494 15 N -0.661 5.661 16 C 0.115 3.885 17 C 0.134 3.866 18 F -0.091 7.091 19 C 0.063 3.937 20 F -0.097 7.097 21 C 0.103 3.897 22 F -0.094 7.094 23 C 0.062 3.938 24 F -0.097 7.097 25 C 0.135 3.865 26 F -0.091 7.091 27 H 0.270 0.730 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.494 -16.154 0.445 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.097 3.903 10 N -0.310 5.310 11 C 0.277 3.723 12 O -0.411 6.411 13 C 0.302 3.698 14 O -0.365 6.365 15 N -0.318 5.318 16 C 0.020 3.980 17 C 0.111 3.889 18 F -0.069 7.069 19 C 0.040 3.960 20 F -0.075 7.075 21 C 0.081 3.919 22 F -0.072 7.072 23 C 0.040 3.960 24 F -0.075 7.075 25 C 0.112 3.888 26 F -0.069 7.069 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.247 0.753 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 20.221 -16.013 0.469 25.798 hybrid contribution 0.407 0.520 -0.030 0.661 sum 20.628 -15.493 0.439 25.802 Atomic orbital electron populations 1.69867 1.06229 1.27619 1.48632 1.24777 0.94815 0.99134 0.93701 0.86825 0.80541 0.83220 0.79139 1.19701 1.20730 1.18456 1.21030 0.88016 0.95595 1.54190 0.89872 1.19763 0.95918 0.77058 0.97601 1.46142 1.04674 1.12550 1.67592 1.19434 0.84811 0.87300 0.80770 1.90750 1.55228 1.44703 1.50379 1.21038 0.81640 0.91481 0.75636 1.90811 1.54610 1.46049 1.45042 1.42907 1.08237 1.05059 1.75612 1.16766 1.03514 0.88421 0.89346 1.17163 1.00404 0.88010 0.83330 1.91674 1.91418 1.75329 1.48439 1.16839 1.07010 0.91034 0.81076 1.91654 1.92099 1.85257 1.38468 1.16785 1.02639 0.81756 0.90693 1.91657 1.85724 1.33428 1.96388 1.16851 1.06965 0.89456 0.82726 1.91653 1.92039 1.75355 1.48450 1.17159 1.00261 0.89761 0.81579 1.91665 1.91381 1.85322 1.38511 0.92049 0.94711 0.95167 0.75283 0.72452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.55 -14.56 9.83 -34.44 -0.34 -14.90 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 C 0.22 5.01 4.50 -5.19 -0.02 4.99 16 10 N -0.66 -12.96 5.54 -61.95 -0.34 -13.31 16 11 C 0.50 8.81 7.88 -11.64 -0.09 8.72 16 12 O -0.53 -10.17 16.48 5.48 0.09 -10.08 16 13 C 0.52 7.71 7.85 -11.64 -0.09 7.62 16 14 O -0.49 -8.18 16.46 5.46 0.09 -8.09 16 15 N -0.66 -7.48 4.90 -10.19 -0.05 -7.53 16 16 C 0.12 1.13 5.30 -83.54 -0.44 0.69 16 17 C 0.13 1.24 7.31 -39.20 -0.29 0.96 16 18 F -0.09 -0.97 16.99 2.25 0.04 -0.93 16 19 C 0.06 0.52 7.30 -39.36 -0.29 0.23 16 20 F -0.10 -0.87 17.09 2.25 0.04 -0.83 16 21 C 0.10 0.81 7.31 -39.30 -0.29 0.52 16 22 F -0.09 -0.78 17.09 2.25 0.04 -0.74 16 23 C 0.06 0.52 7.31 -39.35 -0.29 0.23 16 24 F -0.10 -0.86 17.09 2.25 0.04 -0.82 16 25 C 0.14 1.25 7.31 -39.20 -0.29 0.96 16 26 F -0.09 -0.95 16.98 2.25 0.04 -0.92 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 29 H 0.03 0.71 7.57 -51.93 -0.39 0.31 16 30 H 0.41 7.68 7.79 -40.82 -0.32 7.37 16 31 H 0.43 4.06 8.31 -40.82 -0.34 3.72 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -29.59 315.18 -2.69 -32.28 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -1.00 Total: 3.32 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -2.52 Total: 12.11 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.38 Total: -45.72 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.19 Total: -4.24 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.59 -2.69 -32.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787595905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.231 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds