Wall clock time and date at job start Tue Mar 31 2020 20:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 S 1.65593 * 120.00245 * 164.99838 * 10 9 7 12 12 O 1.42095 * 106.40441 * 178.54314 * 11 10 9 13 13 O 1.42107 * 106.40414 * 311.46258 * 11 10 9 14 14 C 1.76199 * 107.21807 * 65.00204 * 11 10 9 15 15 C 1.38241 * 120.00854 * 114.72566 * 14 11 10 16 16 C 1.38217 * 120.04704 * 179.69863 * 15 14 11 17 17 N 1.48008 * 119.96665 * 180.29847 * 16 15 14 18 18 O 1.21804 * 119.99755 * 180.29545 * 17 16 15 19 19 O 1.21797 * 120.00239 * 0.30235 * 17 16 15 20 20 C 1.38258 * 120.06477 * 0.59781 * 16 15 14 21 21 C 1.38278 * 120.01076 * 359.67703 * 20 16 15 22 22 Cl 1.73600 * 120.02408 * 180.02562 * 21 20 16 23 23 C 1.38406 * 120.00507 * 294.99973 * 14 11 10 24 24 F 1.35097 * 120.03237 * 0.02562 * 23 14 11 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 28 28 H 0.97000 * 119.99344 * 345.00166 * 10 9 7 29 29 H 1.08000 * 119.97369 * 0.02562 * 15 14 11 30 30 H 1.07997 * 119.99639 * 179.70159 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6882 -5.1422 0.3717 12 8 2.8237 -5.9880 0.2518 13 8 0.9251 -5.0302 1.5653 14 6 0.5646 -5.6355 -0.8927 15 6 0.8857 -6.6865 -1.7314 16 6 0.0021 -7.0782 -2.7195 17 7 0.3448 -8.2080 -3.6121 18 8 -0.4310 -8.5502 -4.4866 19 8 1.4025 -8.7956 -3.4723 20 6 -1.1987 -6.4118 -2.8788 21 6 -1.5199 -5.3565 -2.0450 22 17 -3.0279 -4.5199 -2.2443 23 6 -0.6371 -4.9672 -1.0500 24 9 -0.9492 -3.9361 -0.2349 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1349 -3.4540 -0.2169 29 1 1.8252 -7.2053 -1.6110 30 1 -1.8861 -6.7157 -3.6543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795954448.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:22 Heat of formation + Delta-G solvation = -91.393803 kcal Electronic energy + Delta-G solvation = -24938.084641 eV Core-core repulsion = 20611.998066 eV Total energy + Delta-G solvation = -4326.086575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.002 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.71865 -42.53735 -39.78252 -37.20409 -37.09381 -36.88098 -35.78364 -34.92372 -32.41721 -32.31665 -31.90585 -26.98767 -26.83807 -24.61304 -23.13924 -22.74298 -20.47240 -19.23043 -18.99851 -18.42292 -17.98692 -17.87337 -17.21592 -16.83921 -16.48133 -16.10201 -15.64105 -15.51955 -14.78147 -14.52473 -14.22508 -13.83885 -13.65920 -12.93495 -12.79336 -12.41780 -12.29545 -12.09465 -12.01672 -11.90314 -11.88882 -11.74823 -11.70834 -11.43200 -11.19459 -11.05961 -10.85958 -10.39055 -10.26606 -9.65512 -9.55783 -9.14757 -8.46345 -6.30371 -4.36828 -0.73851 -0.21267 0.38612 0.72485 0.85093 1.37922 2.23033 3.08686 3.16478 3.17317 3.25306 3.29131 3.60442 3.86725 3.88044 4.01924 4.09140 4.24139 4.58769 4.87647 4.89518 4.97199 5.06701 5.35928 5.97283 6.11382 7.01057 7.10822 7.29594 7.50490 7.65689 7.97321 8.66863 9.29319 10.79384 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.004422 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.230751 B = 6331.084257 C = 7374.116454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.239 3.761 10 N -1.091 6.091 11 S 2.688 3.312 12 O -0.958 6.958 13 O -0.934 6.934 14 C -0.707 4.707 15 C 0.076 3.924 16 C -0.074 4.074 17 N 0.033 4.967 18 O -0.152 6.152 19 O -0.144 6.144 20 C 0.025 3.975 21 C -0.100 4.100 22 Cl -0.003 7.003 23 C 0.269 3.731 24 F -0.066 7.066 25 H 0.267 0.733 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.417 0.583 29 H 0.187 0.813 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -11.507 -5.562 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.117 3.883 10 N -0.857 5.857 11 S 2.768 3.232 12 O -0.948 6.948 13 O -0.924 6.924 14 C -0.788 4.788 15 C 0.056 3.944 16 C -0.158 4.158 17 N 0.555 4.445 18 O -0.368 6.368 19 O -0.362 6.362 20 C 0.005 3.995 21 C -0.130 4.130 22 Cl 0.026 6.974 23 C 0.247 3.753 24 F -0.043 7.043 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.253 0.747 29 H 0.204 0.796 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.937 -11.263 -4.405 12.719 hybrid contribution 0.082 1.134 -0.981 1.501 sum -3.855 -10.130 -5.385 12.103 Atomic orbital electron populations 1.69944 1.06035 1.27463 1.48851 1.24968 0.95002 0.99506 0.94531 0.86345 0.79973 0.82734 0.77823 1.19511 1.20810 1.20655 1.21176 0.93546 0.89564 1.53109 0.91330 1.19403 0.87689 0.83612 0.97637 1.55503 1.20055 1.23046 1.87060 1.02530 0.73327 0.73419 0.73930 1.93576 1.47900 1.66732 1.86597 1.93652 1.72489 1.86144 1.40132 1.31858 1.13662 1.08604 1.24661 1.20748 0.98326 0.89550 0.85820 1.20943 0.99297 0.96052 0.99552 1.43270 1.00350 1.00651 1.00204 1.94560 1.46855 1.69351 1.26067 1.94596 1.11712 1.53684 1.76196 1.20915 0.93826 0.89141 0.95643 1.20746 0.93029 0.99473 0.99702 1.98462 1.26411 1.75880 1.96615 1.17134 0.90245 0.82395 0.85537 1.91901 1.91961 1.52249 1.68193 0.92345 0.96153 0.93519 0.74707 0.79560 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.29 55.43 0.74 -23.28 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.53 -13.45 9.27 -34.44 -0.32 -13.77 16 8 H 0.07 1.65 7.65 -52.49 -0.40 1.24 16 9 C 0.24 5.45 4.31 -5.19 -0.02 5.43 16 10 N -1.09 -19.84 5.99 -11.65 -0.07 -19.91 16 11 S 2.69 44.34 5.48 -107.50 -0.59 43.75 16 12 O -0.96 -15.83 16.97 -57.17 -0.97 -16.80 16 13 O -0.93 -18.20 16.90 -57.17 -0.97 -19.17 16 14 C -0.71 -10.12 5.89 -39.52 -0.23 -10.35 16 15 C 0.08 0.93 9.06 -39.59 -0.36 0.57 16 16 C -0.07 -0.87 6.85 -79.95 -0.55 -1.42 16 17 N 0.03 0.42 4.45 33.96 0.15 0.57 16 18 O -0.15 -1.91 18.45 -29.46 -0.54 -2.45 16 19 O -0.14 -1.91 18.45 -29.46 -0.54 -2.45 16 20 C 0.02 0.26 9.34 -39.56 -0.37 -0.11 16 21 C -0.10 -1.25 6.33 -39.44 -0.25 -1.50 16 22 Cl 0.00 -0.04 28.62 -51.86 -1.48 -1.52 16 23 C 0.27 4.03 6.78 -39.39 -0.27 3.76 16 24 F -0.07 -1.18 12.50 2.25 0.03 -1.15 16 25 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.02 0.47 6.74 -51.93 -0.35 0.12 16 27 H 0.05 1.16 7.25 -51.93 -0.38 0.79 16 28 H 0.42 6.74 8.54 -34.47 -0.29 6.45 16 29 H 0.19 2.03 6.88 -52.49 -0.36 1.67 16 30 H 0.18 1.40 7.61 -52.49 -0.40 1.00 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -29.52 308.21 -8.41 -37.93 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.79 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.46 Total: -15.83 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.82 Total: -42.62 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -3.02 Total: -40.87 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.03 Total: -1.15 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 44.34 SS G_CDS: -0.59 Total: 43.75 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.48 Total: -1.52 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.52 -8.41 -37.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795954448.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.466 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds