Wall clock time and date at job start Tue Mar 31 2020 20:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 S 1.65593 * 120.00245 * 164.99838 * 10 9 7 12 12 O 1.42095 * 106.40441 * 178.54314 * 11 10 9 13 13 O 1.42107 * 106.40414 * 311.46258 * 11 10 9 14 14 C 1.76199 * 107.21807 * 65.00204 * 11 10 9 15 15 C 1.38241 * 120.00854 * 114.72566 * 14 11 10 16 16 C 1.38217 * 120.04704 * 179.69863 * 15 14 11 17 17 N 1.48008 * 119.96665 * 180.29847 * 16 15 14 18 18 O 1.21804 * 119.99755 * 180.29545 * 17 16 15 19 19 O 1.21797 * 120.00239 * 0.30235 * 17 16 15 20 20 C 1.38258 * 120.06477 * 0.59781 * 16 15 14 21 21 C 1.38278 * 120.01076 * 359.67703 * 20 16 15 22 22 Cl 1.73600 * 120.02408 * 180.02562 * 21 20 16 23 23 C 1.38406 * 120.00507 * 294.99973 * 14 11 10 24 24 F 1.35097 * 120.03237 * 0.02562 * 23 14 11 25 25 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 28 28 H 0.97000 * 119.99344 * 345.00166 * 10 9 7 29 29 H 1.08000 * 119.97369 * 0.02562 * 15 14 11 30 30 H 1.07997 * 119.99639 * 179.70159 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6882 -5.1422 0.3717 12 8 2.8237 -5.9880 0.2518 13 8 0.9251 -5.0302 1.5653 14 6 0.5646 -5.6355 -0.8927 15 6 0.8857 -6.6865 -1.7314 16 6 0.0021 -7.0782 -2.7195 17 7 0.3448 -8.2080 -3.6121 18 8 -0.4310 -8.5502 -4.4866 19 8 1.4025 -8.7956 -3.4723 20 6 -1.1987 -6.4118 -2.8788 21 6 -1.5199 -5.3565 -2.0450 22 17 -3.0279 -4.5199 -2.2443 23 6 -0.6371 -4.9672 -1.0500 24 9 -0.9492 -3.9361 -0.2349 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1349 -3.4540 -0.2169 29 1 1.8252 -7.2053 -1.6110 30 1 -1.8861 -6.7157 -3.6543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795954448.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:22 Heat of formation + Delta-G solvation = -111.303434 kcal Electronic energy + Delta-G solvation = -24938.947987 eV Core-core repulsion = 20611.998066 eV Total energy + Delta-G solvation = -4326.949921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.002 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.96373 -43.53548 -40.82002 -38.55328 -38.14580 -37.88178 -37.21640 -36.61149 -34.20963 -33.44397 -32.93464 -28.81729 -27.88925 -25.68247 -24.58218 -24.18576 -21.58429 -20.48516 -20.13291 -19.59512 -19.36665 -18.88374 -18.49240 -18.08842 -17.82394 -17.62940 -17.08841 -16.67012 -16.42559 -15.61926 -15.38465 -15.27652 -14.89881 -14.57728 -14.10813 -13.94397 -13.71822 -13.48970 -13.38391 -13.35464 -12.89661 -12.87077 -12.80115 -12.73468 -12.56519 -12.43590 -12.29899 -12.11370 -11.48821 -11.38013 -10.91843 -10.67728 -10.25982 -8.25945 -6.38517 -1.77744 -1.24839 -0.94230 -0.31965 -0.16561 0.38638 1.19871 1.43601 1.45959 1.57063 1.80070 2.02187 2.31997 2.40274 2.81093 2.88917 2.95471 3.02714 3.09472 3.46763 3.70548 3.91840 4.03814 4.29123 4.45886 4.96852 5.18052 5.25070 5.71812 5.89764 6.21207 6.27655 6.74702 7.31551 8.84496 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.004422 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.230751 B = 6331.084257 C = 7374.116454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.252 3.748 10 N -1.094 6.094 11 S 2.709 3.291 12 O -0.956 6.956 13 O -0.968 6.968 14 C -0.710 4.710 15 C 0.083 3.917 16 C -0.070 4.070 17 N 0.034 4.966 18 O -0.136 6.136 19 O -0.162 6.162 20 C 0.049 3.951 21 C -0.098 4.098 22 Cl 0.003 6.997 23 C 0.246 3.754 24 F -0.091 7.091 25 H 0.268 0.732 26 H 0.016 0.984 27 H 0.020 0.980 28 H 0.426 0.574 29 H 0.202 0.798 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -12.200 -7.045 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.128 3.872 10 N -0.858 5.858 11 S 2.793 3.207 12 O -0.946 6.946 13 O -0.958 6.958 14 C -0.794 4.794 15 C 0.063 3.937 16 C -0.155 4.155 17 N 0.556 4.444 18 O -0.357 6.357 19 O -0.375 6.375 20 C 0.030 3.970 21 C -0.128 4.128 22 Cl 0.032 6.968 23 C 0.224 3.776 24 F -0.068 7.068 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.218 0.782 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.551 -11.963 -5.843 13.779 hybrid contribution -0.086 1.207 -0.617 1.359 sum -3.637 -10.756 -6.461 13.064 Atomic orbital electron populations 1.70057 1.07498 1.28303 1.50015 1.25816 0.95767 1.02949 0.94247 0.85350 0.79150 0.78582 0.77644 1.18437 1.20424 1.20732 1.21635 0.94266 0.90742 1.52462 0.90501 1.18966 0.87831 0.84295 0.96087 1.55300 1.20100 1.22985 1.87441 1.01581 0.73026 0.72592 0.73489 1.93575 1.48160 1.66124 1.86760 1.93611 1.73168 1.86384 1.42680 1.31312 1.13238 1.09882 1.24983 1.20866 0.98974 0.88626 0.85252 1.20937 0.99456 0.95876 0.99191 1.43286 1.00299 1.00631 1.00191 1.94557 1.46547 1.68957 1.25651 1.94617 1.12043 1.54202 1.76669 1.21226 0.93513 0.87263 0.94999 1.20734 0.92905 0.99868 0.99266 1.98468 1.25867 1.75937 1.96511 1.17435 0.91294 0.82476 0.86385 1.91842 1.92243 1.53565 1.69193 0.92270 0.96602 0.96250 0.73723 0.78150 0.77043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16 2 C 0.01 0.67 5.46 84.65 0.46 1.14 16 3 Si 0.97 40.63 29.54 68.60 2.03 42.66 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -27.94 9.27 25.60 0.24 -27.71 16 8 H 0.08 3.65 7.65 -2.91 -0.02 3.63 16 9 C 0.25 11.77 4.31 85.63 0.37 12.14 16 10 N -1.09 -40.12 5.99 -190.77 -1.14 -41.26 16 11 S 2.71 89.60 5.48 -56.49 -0.31 89.29 16 12 O -0.96 -30.73 16.97 -128.00 -2.17 -32.90 16 13 O -0.97 -38.71 16.90 -128.00 -2.16 -40.88 16 14 C -0.71 -19.88 5.89 22.31 0.13 -19.74 16 15 C 0.08 1.89 9.06 22.27 0.20 2.09 16 16 C -0.07 -1.47 6.85 36.38 0.25 -1.22 16 17 N 0.03 0.76 4.45 -46.47 -0.21 0.55 16 18 O -0.14 -2.96 18.45 18.88 0.35 -2.61 16 19 O -0.16 -3.94 18.45 18.89 0.35 -3.60 16 20 C 0.05 0.90 9.34 22.28 0.21 1.11 16 21 C -0.10 -2.31 6.33 22.36 0.14 -2.17 16 22 Cl 0.00 0.06 28.62 -2.72 -0.08 -0.01 16 23 C 0.25 7.32 6.78 22.39 0.15 7.47 16 24 F -0.09 -3.37 12.50 44.97 0.56 -2.81 16 25 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.02 0.76 6.74 -2.39 -0.02 0.75 16 27 H 0.02 1.02 7.25 -2.38 -0.02 1.00 16 28 H 0.43 13.69 8.54 -96.75 -0.83 12.86 16 29 H 0.20 3.98 6.88 -2.91 -0.02 3.96 16 30 H 0.21 2.43 7.61 -2.91 -0.02 2.40 16 Total: -1.00 -62.71 308.21 0.08 -62.63 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.43 Total: 6.27 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 2.15 Total: -26.89 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -1.06 Total: -91.15 kcal Atomic # 8 Polarization: -76.34 SS G_CDS: -3.64 Total: -79.98 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.56 Total: -2.81 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 89.60 SS G_CDS: -0.31 Total: 89.29 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.01 kcal Total: -62.71 0.08 -62.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795954448.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.672 kcal (2) G-P(sol) polarization free energy of solvation -62.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds