Wall clock time and date at job start Tue Mar 31 2020 21:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86802 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47176 * 240.00219 * 3 2 1 5 5 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47351 * 119.99960 * 3 2 1 7 7 C 1.38979 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.37319 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.36593 * 126.07774 * 180.02562 * 9 7 2 11 11 C 1.35640 * 107.50494 * 180.02562 * 10 9 7 12 12 N 1.40566 * 126.07475 * 179.97438 * 11 10 9 13 13 S 1.65606 * 119.99842 * 135.00481 * 12 11 10 14 14 O 1.42105 * 106.40008 * 311.45722 * 13 12 11 15 15 O 1.42098 * 106.40370 * 178.53908 * 13 12 11 16 16 C 1.76193 * 107.21910 * 64.99878 * 13 12 11 17 17 C 1.38258 * 120.00033 * 269.72879 * 16 13 12 18 18 C 1.38213 * 120.00104 * 179.78992 * 17 16 13 19 19 C 1.38256 * 120.00173 * 0.45898 * 18 17 16 20 20 C 1.38215 * 119.99454 * 359.77586 * 19 18 17 21 21 N 1.48022 * 119.99649 * 180.02562 * 20 19 18 22 22 O 1.21802 * 119.99945 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99967 * 0.02562 * 21 20 19 24 24 C 1.38210 * 120.00280 * 90.00135 * 16 13 12 25 25 C 1.40655 * 107.84704 * 0.22748 * 11 10 9 26 26 N 1.30938 * 108.40166 * 359.61438 * 25 11 10 27 27 H 0.96992 * 119.99578 * 359.97438 * 1 2 3 28 28 H 1.08007 * 126.24806 * 0.07084 * 10 9 7 29 29 H 0.97002 * 120.00547 * 315.00606 * 12 11 10 30 30 H 1.08006 * 120.00033 * 0.02562 * 17 16 13 31 31 H 1.08004 * 120.00280 * 180.25353 * 18 17 16 32 32 H 1.07998 * 120.00090 * 179.79042 * 19 18 17 33 33 H 1.08000 * 119.99958 * 359.97438 * 24 16 13 34 34 H 1.08001 * 125.79562 * 179.77263 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7465 -0.0006 6 1 3.1008 1.6964 1.2124 7 6 2.0080 -1.2036 -0.0005 8 1 3.0880 -1.2036 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8753 -3.6414 -0.0005 11 6 0.8583 -4.5389 -0.0011 12 7 0.9894 -5.9384 -0.0018 13 16 0.0568 -6.8579 1.0116 14 8 0.1593 -6.2654 2.2992 15 8 0.3962 -8.2128 0.7504 16 6 -1.6185 -6.6579 0.5038 17 6 -2.3910 -5.6500 1.0506 18 6 -3.7038 -5.4903 0.6490 19 6 -4.2475 -6.3444 -0.2925 20 6 -3.4766 -7.3550 -0.8356 21 7 -4.0585 -8.2690 -1.8440 22 8 -3.3794 -9.1599 -2.3223 23 8 -5.2164 -8.1303 -2.1956 24 6 -2.1621 -7.5119 -0.4371 25 6 -0.3508 -3.8202 -0.0068 26 7 -0.0714 -2.5410 -0.0012 27 1 -0.4849 0.8400 0.0004 28 1 2.9305 -3.8719 0.0005 29 1 1.6262 -6.3656 -0.5959 30 1 -1.9674 -4.9850 1.7887 31 1 -4.3060 -4.7004 1.0731 32 1 -5.2743 -6.2217 -0.6038 33 1 -1.5599 -8.3018 -0.8613 34 1 -1.3414 -4.2505 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799527925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:34 Heat of formation + Delta-G solvation = 43.496215 kcal Electronic energy + Delta-G solvation = -26469.029216 eV Core-core repulsion = 22306.977817 eV Total energy + Delta-G solvation = -4162.051399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35071 -39.90954 -39.57314 -37.19853 -36.72615 -35.82481 -34.78648 -33.23356 -32.49868 -31.93465 -30.48634 -27.64177 -26.86078 -25.03260 -23.93386 -22.84292 -21.07194 -20.34611 -20.11039 -19.08138 -18.80972 -17.90562 -17.69825 -17.20242 -17.14886 -16.47822 -16.13037 -15.73336 -15.47710 -14.75068 -14.56006 -14.19188 -13.77892 -13.59942 -13.19201 -12.88200 -12.56722 -12.34331 -12.15657 -11.93721 -11.91597 -11.81198 -11.73309 -11.45219 -11.34447 -11.29077 -11.16370 -11.12209 -10.69202 -10.47464 -10.05654 -9.82683 -9.54129 -9.09180 -8.41421 -7.24665 -6.77191 -4.49296 -0.41281 0.16731 0.45514 1.09025 1.17985 2.69123 2.83145 2.94316 2.98263 3.08202 3.33940 3.65573 3.70824 3.85145 3.98599 4.16014 4.34142 4.44264 4.50346 4.56883 4.81857 4.89550 5.08723 5.24134 5.47202 5.55585 5.72443 5.87361 6.06124 6.13523 6.22012 6.54353 6.91290 7.01866 7.30884 7.46778 7.60261 7.89641 8.42458 9.08943 9.30745 10.18746 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003448 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.584502 B = 8117.554321 C = 9109.979941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.048 3.952 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.321 4.321 8 H 0.121 0.879 9 N -0.136 5.136 10 C -0.055 4.055 11 C -0.054 4.054 12 N -1.013 6.013 13 S 2.701 3.299 14 O -0.938 6.938 15 O -0.961 6.961 16 C -0.675 4.675 17 C 0.038 3.962 18 C -0.134 4.134 19 C -0.006 4.006 20 C -0.071 4.071 21 N 0.031 4.969 22 O -0.156 6.156 23 O -0.160 6.160 24 C 0.046 3.954 25 C -0.076 4.076 26 N -0.244 5.244 27 H 0.278 0.722 28 H 0.153 0.847 29 H 0.414 0.586 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -7.911 0.608 9.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.170 4.170 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.454 4.454 8 H 0.138 0.862 9 N 0.097 4.903 10 C -0.207 4.207 11 C -0.162 4.162 12 N -0.769 5.769 13 S 2.787 3.213 14 O -0.927 6.927 15 O -0.951 6.951 16 C -0.758 4.758 17 C 0.019 3.981 18 C -0.153 4.153 19 C -0.025 4.025 20 C -0.154 4.154 21 N 0.551 4.449 22 O -0.373 6.373 23 O -0.376 6.376 24 C 0.026 3.974 25 C -0.252 4.252 26 N -0.075 5.075 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.250 0.750 30 H 0.185 0.815 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.571 -6.584 1.895 8.236 hybrid contribution 0.172 -0.260 -1.106 1.150 sum -4.398 -6.844 0.789 8.174 Atomic orbital electron populations 1.70165 1.06211 1.28484 1.34754 1.25658 0.95769 1.00446 0.95115 0.85842 0.79194 0.79211 0.79690 1.19027 1.20041 1.18959 1.19956 0.91898 0.80327 1.53212 0.86180 1.44598 1.03703 1.03717 1.38280 1.21658 0.97715 0.84882 1.16399 1.16674 0.93579 0.80578 1.25321 1.52072 1.53665 1.13426 1.57703 1.01983 0.72980 0.72503 0.73867 1.93618 1.84931 1.77746 1.36421 1.93594 1.82627 1.33231 1.85678 1.31488 1.27851 1.05935 1.10574 1.21628 0.92959 0.90885 0.92649 1.21453 0.95853 1.00188 0.97845 1.21367 1.00690 0.89249 0.91187 1.21154 0.96138 0.98324 0.99812 1.43526 1.00677 1.00455 1.00218 1.94565 1.60423 1.25433 1.56860 1.94532 1.01509 1.77516 1.64048 1.20726 0.92199 0.94991 0.89454 1.23741 0.96353 0.92826 1.12290 1.78215 0.90815 1.13754 1.24710 0.91180 0.82982 0.74964 0.81462 0.82175 0.82218 0.81421 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.54 11.81 55.49 0.66 -18.89 16 2 C 0.05 1.13 5.50 -17.50 -0.10 1.04 16 3 Si 0.94 17.49 29.55 -169.99 -5.02 12.46 16 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.32 -7.79 10.25 -14.82 -0.15 -7.94 16 8 H 0.12 2.59 7.83 -52.49 -0.41 2.18 16 9 N -0.14 -3.36 3.74 -11.40 -0.04 -3.40 16 10 C -0.05 -1.17 11.50 -16.36 -0.19 -1.36 16 11 C -0.05 -1.06 6.41 -83.87 -0.54 -1.60 16 12 N -1.01 -15.69 5.93 32.32 0.19 -15.50 16 13 S 2.70 40.52 5.62 -107.50 -0.60 39.92 16 14 O -0.94 -16.85 17.00 -57.17 -0.97 -17.82 16 15 O -0.96 -15.11 17.28 -57.17 -0.99 -16.10 16 16 C -0.67 -9.00 5.22 -39.58 -0.21 -9.20 16 17 C 0.04 0.47 6.36 -39.58 -0.25 0.22 16 18 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 19 C -0.01 -0.06 9.56 -39.58 -0.38 -0.44 16 20 C -0.07 -0.89 6.85 -79.95 -0.55 -1.44 16 21 N 0.03 0.44 4.45 33.96 0.15 0.59 16 22 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 23 O -0.16 -2.26 18.45 -29.46 -0.54 -2.80 16 24 C 0.05 0.60 9.03 -39.59 -0.36 0.24 16 25 C -0.08 -1.61 10.73 -17.02 -0.18 -1.80 16 26 N -0.24 -6.16 10.40 30.81 0.32 -5.84 16 27 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 28 H 0.15 2.76 8.06 -52.48 -0.42 2.33 16 29 H 0.41 5.22 8.96 -34.47 -0.31 4.91 16 30 H 0.17 2.11 7.20 -52.48 -0.38 1.73 16 31 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.16 1.28 7.61 -52.49 -0.40 0.88 16 33 H 0.17 1.98 7.17 -52.49 -0.38 1.61 16 34 H 0.15 2.67 4.22 -52.49 -0.22 2.45 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -32.15 322.86 -7.90 -40.05 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.07 Total: 9.35 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -3.30 Total: -24.03 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 1.28 Total: -43.04 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -3.05 Total: -39.58 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.02 Total: 12.46 kcal Atomic # 16 Polarization: 40.52 SS G_CDS: -0.60 Total: 39.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.15 -7.90 -40.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799527925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.550 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds