Wall clock time and date at job start Tue Mar 31 2020 21:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86802 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47176 * 240.00219 * 3 2 1 5 5 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47351 * 119.99960 * 3 2 1 7 7 C 1.38979 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.37319 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.36593 * 126.07774 * 180.02562 * 9 7 2 11 11 C 1.35640 * 107.50494 * 180.02562 * 10 9 7 12 12 N 1.40566 * 126.07475 * 179.97438 * 11 10 9 13 13 S 1.65606 * 119.99842 * 135.00481 * 12 11 10 14 14 O 1.42105 * 106.40008 * 311.45722 * 13 12 11 15 15 O 1.42098 * 106.40370 * 178.53908 * 13 12 11 16 16 C 1.76193 * 107.21910 * 64.99878 * 13 12 11 17 17 C 1.38258 * 120.00033 * 269.72879 * 16 13 12 18 18 C 1.38213 * 120.00104 * 179.78992 * 17 16 13 19 19 C 1.38256 * 120.00173 * 0.45898 * 18 17 16 20 20 C 1.38215 * 119.99454 * 359.77586 * 19 18 17 21 21 N 1.48022 * 119.99649 * 180.02562 * 20 19 18 22 22 O 1.21802 * 119.99945 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99967 * 0.02562 * 21 20 19 24 24 C 1.38210 * 120.00280 * 90.00135 * 16 13 12 25 25 C 1.40655 * 107.84704 * 0.22748 * 11 10 9 26 26 N 1.30938 * 108.40166 * 359.61438 * 25 11 10 27 27 H 0.96992 * 119.99578 * 359.97438 * 1 2 3 28 28 H 1.08007 * 126.24806 * 0.07084 * 10 9 7 29 29 H 0.97002 * 120.00547 * 315.00606 * 12 11 10 30 30 H 1.08006 * 120.00033 * 0.02562 * 17 16 13 31 31 H 1.08004 * 120.00280 * 180.25353 * 18 17 16 32 32 H 1.07998 * 120.00090 * 179.79042 * 19 18 17 33 33 H 1.08000 * 119.99958 * 359.97438 * 24 16 13 34 34 H 1.08001 * 125.79562 * 179.77263 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7465 -0.0006 6 1 3.1008 1.6964 1.2124 7 6 2.0080 -1.2036 -0.0005 8 1 3.0880 -1.2036 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8753 -3.6414 -0.0005 11 6 0.8583 -4.5389 -0.0011 12 7 0.9894 -5.9384 -0.0018 13 16 0.0568 -6.8579 1.0116 14 8 0.1593 -6.2654 2.2992 15 8 0.3962 -8.2128 0.7504 16 6 -1.6185 -6.6579 0.5038 17 6 -2.3910 -5.6500 1.0506 18 6 -3.7038 -5.4903 0.6490 19 6 -4.2475 -6.3444 -0.2925 20 6 -3.4766 -7.3550 -0.8356 21 7 -4.0585 -8.2690 -1.8440 22 8 -3.3794 -9.1599 -2.3223 23 8 -5.2164 -8.1303 -2.1956 24 6 -2.1621 -7.5119 -0.4371 25 6 -0.3508 -3.8202 -0.0068 26 7 -0.0714 -2.5410 -0.0012 27 1 -0.4849 0.8400 0.0004 28 1 2.9305 -3.8719 0.0005 29 1 1.6262 -6.3656 -0.5959 30 1 -1.9674 -4.9850 1.7887 31 1 -4.3060 -4.7004 1.0731 32 1 -5.2743 -6.2217 -0.6038 33 1 -1.5599 -8.3018 -0.8613 34 1 -1.3414 -4.2505 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799527925.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:33 Heat of formation + Delta-G solvation = 21.390122 kcal Electronic energy + Delta-G solvation = -26469.987808 eV Core-core repulsion = 22306.977817 eV Total energy + Delta-G solvation = -4163.009991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.40906 -41.52454 -40.61405 -38.50039 -37.81239 -37.14248 -36.30931 -34.86202 -33.51131 -32.87052 -32.20850 -29.29439 -27.91581 -26.72596 -24.91851 -23.85229 -22.71423 -21.84834 -21.28844 -20.42051 -19.90156 -19.39965 -18.76824 -18.51585 -18.25894 -17.54895 -17.49186 -17.25194 -16.76557 -16.02629 -15.68306 -15.40476 -15.30373 -15.13954 -14.51034 -13.95500 -13.72288 -13.63101 -13.53417 -13.42518 -13.29951 -13.21844 -12.87498 -12.83451 -12.76883 -12.50281 -12.40195 -12.33114 -12.13238 -11.83835 -11.22332 -11.11291 -10.79760 -10.72568 -10.17695 -8.89258 -8.49033 -6.28818 -1.43609 -0.92967 -0.64632 0.06809 0.15720 1.29074 1.42336 1.56285 1.64158 1.74649 1.91783 2.11542 2.19260 2.54438 2.79344 2.99125 3.07630 3.20327 3.40023 3.52781 3.63731 3.83695 4.16386 4.23552 4.32364 4.50256 4.54616 4.61240 4.68612 4.89015 4.94620 5.21294 5.22713 5.38618 5.87653 6.02836 6.28120 6.35878 6.72276 7.38162 7.57620 8.49579 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.003448 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.584502 B = 8117.554321 C = 9109.979941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.003 3.997 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.355 4.355 8 H 0.137 0.863 9 N -0.165 5.165 10 C -0.062 4.062 11 C -0.042 4.042 12 N -1.008 6.008 13 S 2.719 3.281 14 O -0.969 6.969 15 O -0.968 6.968 16 C -0.679 4.679 17 C 0.022 3.978 18 C -0.120 4.120 19 C 0.007 3.993 20 C -0.080 4.080 21 N 0.032 4.968 22 O -0.187 6.187 23 O -0.150 6.150 24 C 0.041 3.959 25 C -0.078 4.078 26 N -0.290 5.290 27 H 0.278 0.722 28 H 0.180 0.820 29 H 0.428 0.572 30 H 0.164 0.836 31 H 0.196 0.804 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -7.795 0.543 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.154 0.846 9 N 0.067 4.933 10 C -0.214 4.214 11 C -0.150 4.150 12 N -0.764 5.764 13 S 2.808 3.192 14 O -0.959 6.959 15 O -0.958 6.958 16 C -0.766 4.766 17 C 0.003 3.997 18 C -0.139 4.139 19 C -0.012 4.012 20 C -0.164 4.164 21 N 0.549 4.451 22 O -0.396 6.396 23 O -0.370 6.370 24 C 0.021 3.979 25 C -0.254 4.254 26 N -0.120 5.120 27 H 0.088 0.912 28 H 0.197 0.803 29 H 0.267 0.733 30 H 0.181 0.819 31 H 0.213 0.787 32 H 0.207 0.793 33 H 0.190 0.810 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.978 -6.526 1.818 8.407 hybrid contribution 0.204 -0.482 -1.077 1.197 sum -4.774 -7.009 0.741 8.512 Atomic orbital electron populations 1.70301 1.07969 1.29306 1.36839 1.26686 0.96503 1.03780 0.94057 0.84734 0.77721 0.74316 0.80041 1.18117 1.20082 1.18155 1.20550 0.92973 0.80932 1.54211 0.84554 1.44824 1.03716 1.04706 1.40069 1.22334 0.99496 0.84442 1.15135 1.16702 0.92759 0.82118 1.23410 1.51992 1.54569 1.11674 1.58196 1.01168 0.73193 0.71829 0.72990 1.93584 1.85766 1.78254 1.38260 1.93583 1.83232 1.33357 1.85661 1.31057 1.26672 1.07155 1.11723 1.21794 0.94249 0.90793 0.92904 1.21837 0.94905 1.00342 0.96788 1.21779 1.01714 0.87709 0.90010 1.21309 0.96390 0.98808 0.99909 1.43707 1.00599 1.00477 1.00303 1.94573 1.60611 1.26470 1.57989 1.94510 1.01566 1.77192 1.63777 1.20773 0.92679 0.95052 0.89382 1.24253 0.98139 0.92105 1.10947 1.78110 0.91895 1.15875 1.26154 0.91167 0.80279 0.73311 0.81877 0.78659 0.79296 0.81027 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.39 11.81 21.66 0.26 -42.13 16 2 C 0.00 0.12 5.50 84.95 0.47 0.59 16 3 Si 1.01 35.78 29.55 68.60 2.03 37.80 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 5 H -0.28 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.36 -17.41 10.25 84.01 0.86 -16.55 16 8 H 0.14 5.87 7.83 -2.91 -0.02 5.85 16 9 N -0.16 -8.25 3.74 -189.97 -0.71 -8.96 16 10 C -0.06 -2.64 11.50 83.35 0.96 -1.68 16 11 C -0.04 -1.62 6.41 37.73 0.24 -1.38 16 12 N -1.01 -30.10 5.93 -51.65 -0.31 -30.41 16 13 S 2.72 79.28 5.62 -56.49 -0.32 78.96 16 14 O -0.97 -34.45 17.00 -128.00 -2.18 -36.62 16 15 O -0.97 -29.51 17.28 -128.00 -2.21 -31.73 16 16 C -0.68 -17.20 5.22 22.27 0.12 -17.08 16 17 C 0.02 0.50 6.36 22.27 0.14 0.64 16 18 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 19 C 0.01 0.12 9.56 22.27 0.21 0.33 16 20 C -0.08 -1.86 6.85 36.37 0.25 -1.61 16 21 N 0.03 0.84 4.45 -46.46 -0.21 0.63 16 22 O -0.19 -5.42 18.45 18.88 0.35 -5.07 16 23 O -0.15 -3.91 18.45 18.88 0.35 -3.56 16 24 C 0.04 1.00 9.03 22.27 0.20 1.20 16 25 C -0.08 -3.27 10.73 85.42 0.92 -2.35 16 26 N -0.29 -14.79 10.40 -56.45 -0.59 -15.38 16 27 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.18 6.29 8.06 -2.91 -0.02 6.26 16 29 H 0.43 10.21 8.96 -96.74 -0.87 9.34 16 30 H 0.16 3.93 7.20 -2.91 -0.02 3.91 16 31 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.19 2.20 7.61 -2.91 -0.02 2.17 16 33 H 0.17 3.92 7.17 -2.91 -0.02 3.90 16 34 H 0.18 6.12 4.22 -2.91 -0.01 6.11 16 Total: -1.00 -70.35 322.86 1.39 -68.96 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.34 Total: 27.20 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.59 Total: -39.68 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -1.55 Total: -96.25 kcal Atomic # 8 Polarization: -73.29 SS G_CDS: -3.69 Total: -76.98 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.80 kcal Atomic # 16 Polarization: 79.28 SS G_CDS: -0.32 Total: 78.96 kcal Total: -70.35 1.39 -68.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799527925.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.348 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds