Wall clock time and date at job start Tue Mar 31 2020 21:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31650 * 1 3 3 Si 1.86794 * 120.00523 * 2 1 4 4 H 1.48498 * 109.47199 * 270.00062 * 3 2 1 5 5 H 1.48503 * 109.46942 * 29.99642 * 3 2 1 6 6 H 1.48503 * 109.47298 * 149.99719 * 3 2 1 7 7 C 1.38692 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99534 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00210 * 180.02562 * 7 2 1 10 10 C 1.76200 * 100.00102 * 174.96758 * 9 7 2 11 11 C 1.38996 * 120.12498 * 5.61095 * 10 9 7 12 12 C 1.38078 * 119.98029 * 179.97438 * 11 10 9 13 13 C 1.38395 * 120.22564 * 0.03320 * 12 11 10 14 14 C 1.38224 * 120.25255 * 0.02562 * 13 12 11 15 15 C 1.38676 * 120.01891 * 359.96098 * 14 13 12 16 16 N 1.39933 * 120.11802 * 180.02562 * 15 14 13 17 17 C 1.34783 * 119.99850 * 24.75193 * 16 15 14 18 18 O 1.21295 * 119.99558 * 5.74292 * 17 16 15 19 19 C 1.50695 * 120.00184 * 185.73956 * 17 16 15 20 20 N 1.46505 * 109.47211 * 179.97438 * 19 17 16 21 21 C 1.34408 * 126.81076 * 125.00044 * 20 19 17 22 22 N 1.30846 * 108.10092 * 179.97438 * 21 20 19 23 23 C 1.33315 * 109.81319 * 0.02562 * 22 21 20 24 24 Cl 1.73605 * 125.53506 * 179.97438 * 23 22 21 25 25 N 1.30791 * 108.92149 * 359.75209 * 23 22 21 26 26 H 0.97002 * 119.99574 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.01055 * 0.02562 * 11 10 9 28 28 H 1.07995 * 119.88803 * 180.30099 * 12 11 10 29 29 H 1.08002 * 119.87547 * 179.97438 * 13 12 11 30 30 H 1.08001 * 119.98876 * 179.97438 * 14 13 12 31 31 H 0.96995 * 120.00741 * 204.75342 * 16 15 14 32 32 H 1.09002 * 109.47225 * 300.00163 * 19 17 16 33 33 H 1.09000 * 109.46861 * 60.00371 * 19 17 16 34 34 H 1.08009 * 125.94769 * 359.94633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2506 1.6176 0.0000 4 1 2.4982 2.0463 -1.4000 5 1 1.4481 2.6526 0.7000 6 1 3.5482 1.4400 0.7001 7 6 2.0099 -1.2011 0.0005 8 1 1.4698 -2.1364 0.0014 9 16 3.7719 -1.2013 0.0012 10 6 4.0777 -2.9298 0.1539 11 6 3.0205 -3.8314 0.1151 12 6 3.2636 -5.1853 0.2346 13 6 4.5577 -5.6494 0.3937 14 6 5.6160 -4.7611 0.4348 15 6 5.3836 -3.3992 0.3156 16 7 6.4535 -2.4982 0.3564 17 6 7.6916 -2.9062 0.0141 18 8 7.8614 -4.0228 -0.4282 19 6 8.8648 -1.9752 0.1808 20 7 10.0894 -2.6493 -0.2578 21 6 10.9644 -2.2106 -1.1789 22 7 11.9218 -3.0962 -1.2844 23 6 11.6931 -4.1105 -0.4500 24 17 12.7057 -5.5076 -0.2586 25 7 10.5843 -3.8797 0.2043 26 1 -0.4849 0.8401 -0.0004 27 1 2.0093 -3.4730 -0.0092 28 1 2.4416 -5.8848 0.1993 29 1 4.7414 -6.7096 0.4870 30 1 6.6241 -5.1279 0.5596 31 1 6.3041 -1.5799 0.6310 32 1 8.7068 -1.0802 -0.4209 33 1 8.9604 -1.6956 1.2300 34 1 10.8900 -1.2879 -1.7354 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806577307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:41 Heat of formation + Delta-G solvation = 95.321768 kcal Electronic energy + Delta-G solvation = -23000.955933 eV Core-core repulsion = 19281.861023 eV Total energy + Delta-G solvation = -3719.094909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.50368 -40.38902 -38.02792 -37.19956 -34.73214 -34.33734 -32.82157 -31.66197 -30.50566 -29.89526 -27.81326 -26.08381 -23.34432 -22.56575 -22.41700 -21.95081 -20.37249 -18.72806 -17.87045 -17.54935 -16.77807 -16.30492 -16.14446 -15.67275 -15.47318 -15.28624 -15.09828 -14.40027 -14.10885 -13.82782 -13.58190 -13.25426 -12.87505 -12.55810 -12.39967 -12.12595 -12.05897 -11.80495 -11.51732 -11.35541 -11.22184 -10.78122 -10.43753 -10.41447 -10.30804 -10.05211 -9.83695 -9.65446 -9.48335 -9.06912 -8.91420 -7.88678 -6.90711 -6.59449 -4.36889 0.91927 1.15338 1.58471 1.89966 2.00360 2.41940 2.50412 2.63717 2.93705 3.03537 3.11430 3.28004 3.95409 3.97696 4.10127 4.22924 4.29799 4.47649 4.54643 4.75961 4.80943 5.37373 5.45419 5.52998 5.71703 5.76491 5.90780 6.02301 6.21301 6.37586 6.63458 6.71137 6.91913 7.07376 7.40344 7.46302 7.50777 7.64228 7.97756 8.22921 8.81219 10.47884 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.002780 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.497775 B =10069.302607 C =11494.055040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.098 3.902 3 Si 0.855 3.145 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.238 1.238 7 C -0.532 4.532 8 H 0.111 0.889 9 S -0.060 6.060 10 C -0.083 4.083 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.137 4.137 14 C -0.112 4.112 15 C 0.127 3.873 16 N -0.652 5.652 17 C 0.496 3.504 18 O -0.495 6.495 19 C 0.111 3.889 20 N -0.359 5.359 21 C 0.275 3.725 22 N -0.531 5.531 23 C 0.260 3.740 24 Cl 0.050 6.950 25 N -0.260 5.260 26 H 0.276 0.724 27 H 0.147 0.853 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.412 0.588 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.810 -1.858 1.010 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.112 4.112 3 Si 0.679 3.321 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.678 4.678 8 H 0.129 0.871 9 S 0.191 5.809 10 C -0.199 4.199 11 C -0.142 4.142 12 C -0.136 4.136 13 C -0.160 4.160 14 C -0.134 4.134 15 C 0.026 3.974 16 N -0.297 5.297 17 C 0.280 3.720 18 O -0.368 6.368 19 C -0.015 4.015 20 N -0.151 5.151 21 C -0.021 4.021 22 N -0.260 5.260 23 C -0.047 4.047 24 Cl 0.077 6.923 25 N -0.091 5.091 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.249 0.751 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.494 -1.902 0.964 19.610 hybrid contribution -1.007 0.371 0.102 1.078 sum 18.487 -1.530 1.066 18.581 Atomic orbital electron populations 1.69916 1.05875 1.28291 1.45675 1.24805 0.94653 0.98978 0.92799 0.86808 0.81758 0.83494 0.80005 1.18980 1.19375 1.16172 1.22620 0.86956 0.98456 1.59798 0.87119 1.82435 1.12216 0.99167 1.87063 1.21843 0.93672 1.00218 1.04176 1.21443 0.99745 0.92267 1.00764 1.21042 0.96504 0.95298 1.00767 1.20855 0.92449 0.98851 1.03802 1.21089 1.00262 0.90933 1.01107 1.17145 0.85064 0.89375 1.05839 1.43249 1.06257 1.14455 1.65757 1.20364 0.83824 0.88795 0.79037 1.90781 1.84098 1.19974 1.41958 1.21705 0.80130 0.94662 1.05022 1.49894 1.19151 1.15334 1.30711 1.26122 0.85224 0.99592 0.91175 1.70226 1.27813 1.02868 1.25139 1.24121 0.92092 0.92874 0.95656 1.98424 1.64152 1.33379 1.96380 1.78350 1.10781 0.97759 1.22173 0.91387 0.83574 0.86613 0.86647 0.84442 0.75060 0.84165 0.85433 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.76 13.97 55.49 0.78 -22.98 16 2 C 0.10 2.57 5.50 -17.46 -0.10 2.47 16 3 Si 0.86 18.58 27.73 -169.99 -4.71 13.86 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.24 -4.81 6.74 56.52 0.38 -4.43 16 7 C -0.53 -13.66 9.62 30.90 0.30 -13.36 16 8 H 0.11 3.01 5.04 -52.48 -0.26 2.74 16 9 S -0.06 -1.26 18.34 -107.50 -1.97 -3.23 16 10 C -0.08 -1.65 6.12 -38.75 -0.24 -1.89 16 11 C -0.12 -2.34 9.26 -39.36 -0.36 -2.71 16 12 C -0.12 -1.98 10.03 -39.58 -0.40 -2.38 16 13 C -0.14 -2.25 10.04 -39.53 -0.40 -2.64 16 14 C -0.11 -1.96 8.71 -39.43 -0.34 -2.30 16 15 C 0.13 2.24 6.44 -83.45 -0.54 1.71 16 16 N -0.65 -8.99 5.17 -9.70 -0.05 -9.04 16 17 C 0.50 6.31 7.67 -10.99 -0.08 6.22 16 18 O -0.49 -8.35 12.92 5.54 0.07 -8.28 16 19 C 0.11 0.82 7.03 -5.19 -0.04 0.78 16 20 N -0.36 -3.69 3.40 -63.81 -0.22 -3.91 16 21 C 0.28 2.36 12.62 -90.66 -1.14 1.22 16 22 N -0.53 -6.36 11.19 -12.90 -0.14 -6.51 16 23 C 0.26 3.41 8.84 -91.68 -0.81 2.60 16 24 Cl 0.05 0.56 29.33 -51.86 -1.52 -0.96 16 25 N -0.26 -3.57 11.83 31.67 0.37 -3.20 16 26 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.15 3.17 4.93 -52.48 -0.26 2.91 16 28 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.14 2.42 5.79 -52.49 -0.30 2.11 16 31 H 0.41 4.83 7.65 -40.82 -0.31 4.51 16 32 H 0.14 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.23 0.68 8.06 -52.48 -0.42 0.25 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -33.80 328.86 -9.00 -42.80 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -2.41 Total: 6.77 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -4.15 Total: -10.28 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.74 Total: -45.63 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.28 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.86 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.97 Total: -3.23 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -1.52 Total: -0.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.80 -9.00 -42.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806577307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.125 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds