Wall clock time and date at job start Tue Mar 31 2020 20:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99710 * 2 1 4 4 H 1.48492 * 109.46876 * 269.99316 * 3 2 1 5 5 H 1.48497 * 109.47086 * 29.99720 * 3 2 1 6 6 H 1.48503 * 109.46866 * 149.99727 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00095 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47260 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99912 * 165.00285 * 10 9 7 12 12 O 1.42101 * 106.40415 * 311.45998 * 11 10 9 13 13 O 1.42098 * 106.39968 * 178.54328 * 11 10 9 14 14 C 1.76194 * 107.21943 * 65.00171 * 11 10 9 15 15 C 1.38210 * 120.00638 * 115.26898 * 14 11 10 16 16 C 1.38335 * 120.01328 * 180.27899 * 15 14 11 17 17 Cl 1.73599 * 119.99126 * 179.72928 * 16 15 14 18 18 C 1.38380 * 120.02163 * 359.44968 * 16 15 14 19 19 N 1.48005 * 119.99378 * 180.25232 * 18 16 15 20 20 O 1.21796 * 120.00263 * 179.97438 * 19 18 16 21 21 O 1.21802 * 119.99794 * 0.02562 * 19 18 16 22 22 C 1.38164 * 120.01485 * 0.27796 * 18 16 15 23 23 C 1.38438 * 120.00601 * 295.00246 * 14 11 10 24 24 F 1.35094 * 120.01374 * 359.97292 * 23 14 11 25 25 H 0.96999 * 120.00187 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46836 * 60.00329 * 9 7 2 27 27 H 1.08995 * 109.47006 * 300.00496 * 9 7 2 28 28 H 0.96996 * 119.99668 * 345.00844 * 10 9 7 29 29 H 1.08002 * 119.99654 * 0.02562 * 15 14 11 30 30 H 1.07998 * 120.01017 * 179.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0027 11 16 1.6883 -5.1419 0.3752 12 8 0.9252 -5.0288 1.5686 13 8 2.8239 -5.9877 0.2561 14 6 0.5648 -5.6363 -0.8888 15 6 0.8809 -6.6950 -1.7191 16 6 0.0015 -7.0797 -2.7153 17 17 0.4023 -8.4050 -3.7624 18 6 -1.2002 -6.4120 -2.8737 19 7 -2.1431 -6.8276 -3.9361 20 8 -3.2010 -6.2404 -4.0754 21 8 -1.8615 -7.7576 -4.6706 22 6 -1.5198 -5.3571 -2.0407 23 6 -0.6372 -4.9679 -1.0469 24 9 -0.9494 -3.9368 -0.2318 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 3.1350 -3.4541 -0.2147 29 1 1.8165 -7.2196 -1.5929 30 1 -2.4575 -4.8358 -2.1646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809840250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:19 Heat of formation + Delta-G solvation = -82.271854 kcal Electronic energy + Delta-G solvation = -24880.374426 eV Core-core repulsion = 20554.683409 eV Total energy + Delta-G solvation = -4325.691017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.002 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.55989 -42.56569 -39.76463 -37.23605 -37.15170 -36.79671 -35.80654 -34.93243 -32.85844 -32.35642 -31.25745 -27.34561 -26.96688 -23.99914 -23.36569 -22.74142 -20.00820 -19.73300 -19.15874 -18.30865 -17.95916 -17.74075 -17.16945 -17.02011 -16.41184 -16.06698 -15.51385 -15.11974 -14.90285 -14.76301 -14.08732 -13.95910 -13.69588 -12.86231 -12.83066 -12.47664 -12.33210 -12.13137 -12.02021 -12.00930 -11.90786 -11.75752 -11.48736 -11.39793 -11.04923 -10.89654 -10.76661 -10.61796 -10.26939 -9.59213 -9.43949 -9.15295 -8.46469 -6.30741 -4.37328 -0.98576 0.10112 0.35449 0.68984 0.76446 1.29474 2.25656 3.14365 3.17096 3.24826 3.27314 3.28164 3.49863 3.68770 4.00866 4.12621 4.23966 4.44807 4.65154 4.75074 4.92873 5.02385 5.06392 5.59577 5.92178 6.10703 7.01638 7.10602 7.27206 7.49444 7.65134 7.96809 8.66084 9.28807 10.79039 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.004006 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.581699 B = 6988.682500 C = 7987.356005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.240 3.760 10 N -1.091 6.091 11 S 2.685 3.315 12 O -0.934 6.934 13 O -0.960 6.960 14 C -0.664 4.664 15 C 0.015 3.985 16 C -0.027 4.027 17 Cl 0.005 6.995 18 C 0.030 3.970 19 N 0.021 4.979 20 O -0.144 6.144 21 O -0.122 6.122 22 C -0.101 4.101 23 C 0.219 3.781 24 F -0.076 7.076 25 H 0.268 0.732 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.417 0.583 29 H 0.185 0.815 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -13.403 -5.434 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.117 3.883 10 N -0.856 5.856 11 S 2.765 3.235 12 O -0.923 6.923 13 O -0.950 6.950 14 C -0.744 4.744 15 C -0.005 4.005 16 C -0.056 4.056 17 Cl 0.035 6.965 18 C -0.054 4.054 19 N 0.545 4.455 20 O -0.360 6.360 21 O -0.344 6.344 22 C -0.121 4.121 23 C 0.197 3.803 24 F -0.053 7.053 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.253 0.747 29 H 0.202 0.798 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.252 -13.687 -4.249 14.333 hybrid contribution -0.031 1.130 -1.074 1.559 sum -0.283 -12.557 -5.323 13.641 Atomic orbital electron populations 1.69930 1.06050 1.27611 1.48764 1.24968 0.95007 0.99510 0.94518 0.86391 0.79756 0.82412 0.78269 1.20457 1.20898 1.19604 1.21143 0.93502 0.89612 1.53252 0.91411 1.19406 0.87658 0.83505 0.97736 1.55490 1.20033 1.23014 1.87038 1.02598 0.73375 0.73444 0.74037 1.93656 1.72449 1.86086 1.40148 1.93567 1.47987 1.66767 1.86632 1.32177 1.13301 1.06483 1.22461 1.20840 0.98830 0.92336 0.88497 1.20773 0.93558 0.94588 0.96719 1.98475 1.93050 1.42014 1.62990 1.20730 0.91233 0.99639 0.93773 1.43329 1.01135 1.00219 1.00823 1.94593 1.10715 1.54974 1.75693 1.94633 1.80818 1.18954 1.39977 1.21031 1.02502 0.95538 0.93062 1.16725 0.91121 0.84520 0.87975 1.91885 1.92196 1.52734 1.68519 0.92262 0.96011 0.93505 0.74735 0.79825 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.41 9.27 -34.44 -0.32 -13.73 16 8 H 0.07 1.61 7.65 -52.49 -0.40 1.21 16 9 C 0.24 5.41 4.31 -5.19 -0.02 5.39 16 10 N -1.09 -19.46 5.99 -11.65 -0.07 -19.53 16 11 S 2.68 43.05 5.48 -107.50 -0.59 42.46 16 12 O -0.93 -17.90 16.90 -57.17 -0.97 -18.86 16 13 O -0.96 -15.24 16.97 -57.17 -0.97 -16.21 16 14 C -0.66 -9.23 5.89 -39.52 -0.23 -9.46 16 15 C 0.01 0.17 9.33 -39.56 -0.37 -0.20 16 16 C -0.03 -0.32 6.32 -39.49 -0.25 -0.57 16 17 Cl 0.01 0.05 25.94 -51.86 -1.35 -1.29 16 18 C 0.03 0.38 6.85 -79.93 -0.55 -0.17 16 19 N 0.02 0.28 4.45 33.97 0.15 0.43 16 20 O -0.14 -1.97 18.45 -29.46 -0.54 -2.52 16 21 O -0.12 -1.63 16.02 -29.46 -0.47 -2.10 16 22 C -0.10 -1.27 9.53 -39.52 -0.38 -1.65 16 23 C 0.22 3.18 6.80 -39.42 -0.27 2.91 16 24 F -0.08 -1.32 12.93 2.25 0.03 -1.29 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.02 0.50 6.74 -51.93 -0.35 0.15 16 27 H 0.05 1.16 7.25 -51.93 -0.38 0.78 16 28 H 0.42 6.59 8.54 -34.47 -0.29 6.30 16 29 H 0.18 1.71 7.33 -52.49 -0.38 1.32 16 30 H 0.18 1.97 7.61 -52.49 -0.40 1.57 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -29.43 304.47 -8.30 -37.73 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -1.34 Total: 0.95 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.48 Total: -15.91 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.82 Total: -42.36 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.95 Total: -39.69 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.03 Total: -1.29 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -0.59 Total: 42.46 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.35 Total: -1.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.43 -8.30 -37.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809840250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.544 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds