Wall clock time and date at job start Tue Mar 31 2020 20:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99710 * 2 1 4 4 H 1.48492 * 109.46876 * 269.99316 * 3 2 1 5 5 H 1.48497 * 109.47086 * 29.99720 * 3 2 1 6 6 H 1.48503 * 109.46866 * 149.99727 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00095 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47260 * 180.02562 * 9 7 2 11 11 S 1.65597 * 119.99912 * 165.00285 * 10 9 7 12 12 O 1.42101 * 106.40415 * 311.45998 * 11 10 9 13 13 O 1.42098 * 106.39968 * 178.54328 * 11 10 9 14 14 C 1.76194 * 107.21943 * 65.00171 * 11 10 9 15 15 C 1.38210 * 120.00638 * 115.26898 * 14 11 10 16 16 C 1.38335 * 120.01328 * 180.27899 * 15 14 11 17 17 Cl 1.73599 * 119.99126 * 179.72928 * 16 15 14 18 18 C 1.38380 * 120.02163 * 359.44968 * 16 15 14 19 19 N 1.48005 * 119.99378 * 180.25232 * 18 16 15 20 20 O 1.21796 * 120.00263 * 179.97438 * 19 18 16 21 21 O 1.21802 * 119.99794 * 0.02562 * 19 18 16 22 22 C 1.38164 * 120.01485 * 0.27796 * 18 16 15 23 23 C 1.38438 * 120.00601 * 295.00246 * 14 11 10 24 24 F 1.35094 * 120.01374 * 359.97292 * 23 14 11 25 25 H 0.96999 * 120.00187 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46836 * 60.00329 * 9 7 2 27 27 H 1.08995 * 109.47006 * 300.00496 * 9 7 2 28 28 H 0.96996 * 119.99668 * 345.00844 * 10 9 7 29 29 H 1.08002 * 119.99654 * 0.02562 * 15 14 11 30 30 H 1.07998 * 120.01017 * 179.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0027 11 16 1.6883 -5.1419 0.3752 12 8 0.9252 -5.0288 1.5686 13 8 2.8239 -5.9877 0.2561 14 6 0.5648 -5.6363 -0.8888 15 6 0.8809 -6.6950 -1.7191 16 6 0.0015 -7.0797 -2.7153 17 17 0.4023 -8.4050 -3.7624 18 6 -1.2002 -6.4120 -2.8737 19 7 -2.1431 -6.8276 -3.9361 20 8 -3.2010 -6.2404 -4.0754 21 8 -1.8615 -7.7576 -4.6706 22 6 -1.5198 -5.3571 -2.0407 23 6 -0.6372 -4.9679 -1.0469 24 9 -0.9494 -3.9368 -0.2318 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 3.1350 -3.4541 -0.2147 29 1 1.8165 -7.2196 -1.5929 30 1 -2.4575 -4.8358 -2.1646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809840250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:18 Heat of formation + Delta-G solvation = -102.121103 kcal Electronic energy + Delta-G solvation = -24881.235154 eV Core-core repulsion = 20554.683409 eV Total energy + Delta-G solvation = -4326.551745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.002 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.79169 -43.61768 -40.80904 -38.52640 -38.20963 -37.81994 -37.20119 -36.59645 -34.19992 -33.91824 -32.30003 -28.80306 -28.42410 -25.03197 -24.62285 -24.40246 -21.07975 -21.02162 -20.24222 -19.68682 -19.10076 -19.00483 -18.37904 -18.14231 -17.89867 -17.52316 -17.04679 -16.40601 -16.24218 -15.87760 -15.35128 -15.11822 -15.05977 -14.55648 -14.07668 -13.90458 -13.70618 -13.48218 -13.43490 -13.33421 -13.03415 -12.84968 -12.77680 -12.67970 -12.58460 -12.46303 -12.10831 -11.76004 -11.68633 -11.41308 -10.91269 -10.46399 -10.23824 -8.25404 -6.37888 -2.05716 -0.95945 -0.92033 -0.38530 -0.27454 0.32507 1.19990 1.45115 1.46650 1.56663 1.81838 2.16468 2.36235 2.40788 2.55085 2.94535 3.01990 3.10276 3.40657 3.51873 3.70109 3.87296 4.06421 4.46999 4.54187 4.86656 5.20555 5.26846 5.72472 5.91200 6.20021 6.22750 6.75525 7.32194 8.84880 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.014941 B = 0.004006 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.581699 B = 6988.682500 C = 7987.356005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.252 3.748 10 N -1.093 6.093 11 S 2.708 3.292 12 O -0.968 6.968 13 O -0.953 6.953 14 C -0.664 4.664 15 C 0.027 3.973 16 C -0.020 4.020 17 Cl 0.024 6.976 18 C 0.028 3.972 19 N 0.021 4.979 20 O -0.157 6.157 21 O -0.115 6.115 22 C -0.093 4.093 23 C 0.199 3.801 24 F -0.099 7.099 25 H 0.268 0.732 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.426 0.574 29 H 0.212 0.788 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 -14.296 -6.482 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.128 3.872 10 N -0.857 5.857 11 S 2.792 3.208 12 O -0.958 6.958 13 O -0.943 6.943 14 C -0.748 4.748 15 C 0.007 3.993 16 C -0.049 4.049 17 Cl 0.053 6.947 18 C -0.055 4.055 19 N 0.544 4.456 20 O -0.370 6.370 21 O -0.339 6.339 22 C -0.113 4.113 23 C 0.177 3.823 24 F -0.077 7.077 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.229 0.771 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.944 -14.564 -5.275 15.519 hybrid contribution -0.385 1.219 -0.836 1.527 sum 0.559 -13.346 -6.111 14.689 Atomic orbital electron populations 1.70048 1.07533 1.28376 1.50060 1.25826 0.95760 1.02995 0.94283 0.85395 0.78630 0.78242 0.78444 1.19766 1.21093 1.18721 1.21622 0.94287 0.90796 1.52445 0.90462 1.18968 0.87836 0.84240 0.96195 1.55282 1.20077 1.22968 1.87409 1.01659 0.73067 0.72604 0.73515 1.93617 1.73179 1.86332 1.42693 1.93571 1.48011 1.66026 1.86709 1.31781 1.12721 1.07646 1.22640 1.21123 0.99567 0.91243 0.87368 1.20858 0.92975 0.94562 0.96551 1.98491 1.92858 1.40983 1.62325 1.20786 0.91424 0.99742 0.93594 1.43381 1.01161 1.00165 1.00875 1.94604 1.11038 1.55280 1.76062 1.94622 1.80688 1.18748 1.39864 1.21076 1.02637 0.95393 0.92185 1.16907 0.92048 0.84680 0.88697 1.91830 1.92473 1.53979 1.69404 0.92279 0.96461 0.96221 0.73697 0.77124 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.76 13.29 21.45 0.28 -50.47 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.97 40.45 29.54 68.60 2.03 42.48 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.55 -27.71 9.27 25.60 0.24 -27.47 16 8 H 0.08 3.62 7.65 -2.91 -0.02 3.59 16 9 C 0.25 11.57 4.31 85.63 0.37 11.94 16 10 N -1.09 -38.80 5.99 -190.79 -1.14 -39.94 16 11 S 2.71 85.23 5.48 -56.49 -0.31 84.92 16 12 O -0.97 -37.59 16.90 -128.00 -2.16 -39.75 16 13 O -0.95 -28.46 16.97 -128.00 -2.17 -30.63 16 14 C -0.66 -17.77 5.89 22.31 0.13 -17.64 16 15 C 0.03 0.55 9.33 22.29 0.21 0.76 16 16 C -0.02 -0.42 6.32 22.33 0.14 -0.28 16 17 Cl 0.02 0.44 25.94 -2.72 -0.07 0.36 16 18 C 0.03 0.67 6.85 36.39 0.25 0.92 16 19 N 0.02 0.52 4.45 -46.43 -0.21 0.31 16 20 O -0.16 -4.13 18.45 18.89 0.35 -3.78 16 21 O -0.12 -2.82 16.02 18.88 0.30 -2.52 16 22 C -0.09 -2.26 9.53 22.31 0.21 -2.05 16 23 C 0.20 5.75 6.80 22.38 0.15 5.90 16 24 F -0.10 -3.57 12.93 44.97 0.58 -2.99 16 25 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.02 0.82 6.74 -2.39 -0.02 0.80 16 27 H 0.02 1.02 7.25 -2.39 -0.02 1.00 16 28 H 0.43 13.15 8.54 -96.75 -0.83 12.32 16 29 H 0.21 3.19 7.33 -2.91 -0.02 3.17 16 30 H 0.20 4.14 7.61 -2.91 -0.02 4.11 16 Total: -1.00 -62.03 304.47 0.07 -61.96 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.43 Total: 6.89 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 2.16 Total: -26.83 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -1.06 Total: -90.10 kcal Atomic # 8 Polarization: -73.00 SS G_CDS: -3.68 Total: -76.68 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.58 Total: -2.99 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 85.23 SS G_CDS: -0.31 Total: 84.92 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -0.07 Total: 0.36 kcal Total: -62.03 0.07 -61.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809840250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.158 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds