Wall clock time and date at job start Tue Mar 31 2020 20:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 120.00271 * 2 1 4 4 H 1.48497 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46830 * 300.00003 * 3 2 1 6 6 H 1.48498 * 109.46828 * 59.99794 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99810 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.40173 * 119.99723 * 179.72968 * 13 11 10 15 15 C 1.36112 * 125.77082 * 359.70775 * 14 13 11 16 16 N 1.36174 * 107.07906 * 179.84748 * 15 14 13 17 17 C 1.36667 * 133.61683 * 180.02562 * 16 15 14 18 18 C 1.35137 * 119.73977 * 180.38959 * 17 16 15 19 19 Br 1.89095 * 119.40016 * 179.97438 * 18 17 16 20 20 N 1.33526 * 121.19667 * 359.97438 * 18 17 16 21 21 C 1.31198 * 121.36201 * 0.02562 * 20 18 17 22 22 C 1.37356 * 107.21333 * 0.41689 * 16 15 14 23 23 N 1.32445 * 108.10396 * 359.73822 * 22 16 15 24 24 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 120.00485 * 359.71840 * 13 11 10 30 30 H 1.07999 * 126.46066 * 0.02562 * 15 14 13 31 31 H 1.08007 * 120.13001 * 0.40529 * 17 16 15 32 32 H 1.07995 * 120.13314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2787 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4646 -7.3483 0.0106 15 6 0.1104 -7.4851 0.0162 16 7 -0.1567 -8.8204 0.0164 17 6 -1.3118 -9.5508 0.0203 18 6 -1.2513 -10.9008 0.0273 19 35 -2.8555 -11.9019 0.0334 20 7 -0.0793 -11.5406 0.0299 21 6 1.0568 -10.8844 0.0263 22 6 1.0501 -9.4763 0.0204 23 7 2.0129 -8.5668 0.0168 24 1 -0.4850 0.8402 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6043 -0.8894 29 1 3.1356 -6.1344 0.0057 30 1 -0.6154 -6.6854 0.0171 31 1 -2.2693 -9.0510 0.0177 32 1 1.9934 -11.4221 0.0289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813176758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:23 Heat of formation + Delta-G solvation = 50.161467 kcal Electronic energy + Delta-G solvation = -19665.916358 eV Core-core repulsion = 16287.682594 eV Total energy + Delta-G solvation = -3378.233764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.41561 -41.20112 -39.61305 -36.26154 -35.59277 -35.16679 -33.32894 -32.94809 -30.63379 -30.17871 -27.92954 -25.73302 -24.77434 -24.12958 -22.54925 -21.38045 -20.11134 -19.09753 -18.42360 -17.89714 -17.70281 -17.25340 -16.61222 -16.53417 -16.38967 -16.03735 -15.43842 -15.09704 -14.86505 -14.24204 -14.22893 -13.99212 -13.24328 -13.13215 -12.85205 -12.45166 -12.32323 -11.92762 -11.81529 -11.69700 -11.63709 -11.40455 -11.30657 -11.27098 -10.97594 -10.55446 -9.53172 -9.34006 -8.17234 -6.29735 -0.83988 -0.24330 -0.06441 1.04329 1.07190 1.44782 1.44845 1.57977 1.68965 1.84393 2.20691 2.44038 2.88664 2.92111 3.17152 3.18489 3.65512 3.69032 3.89743 4.17732 4.48703 4.49905 4.54384 4.54930 4.79963 5.05139 5.29704 5.44836 5.53884 5.65021 5.86944 5.93562 6.18612 6.21449 6.59273 6.87783 7.02854 7.40449 8.95301 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002062 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.893034 B =13578.535416 C =14465.962427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.111 4.111 11 C 0.523 3.477 12 O -0.552 6.552 13 N -0.624 5.624 14 C 0.280 3.720 15 C -0.094 4.094 16 N -0.346 5.346 17 C 0.059 3.941 18 C 0.044 3.956 19 Br 0.040 6.960 20 N -0.451 5.451 21 C 0.216 3.784 22 C 0.166 3.834 23 N -0.483 5.483 24 H 0.262 0.738 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.435 0.565 30 H 0.205 0.795 31 H 0.203 0.797 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -27.200 0.071 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.151 4.151 11 C 0.313 3.687 12 O -0.428 6.428 13 N -0.272 5.272 14 C 0.055 3.945 15 C -0.230 4.230 16 N -0.021 5.021 17 C -0.069 4.069 18 C -0.155 4.155 19 Br 0.123 6.877 20 N -0.164 5.164 21 C 0.032 3.968 22 C -0.079 4.079 23 N -0.211 5.211 24 H 0.071 0.929 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.274 0.726 30 H 0.222 0.778 31 H 0.220 0.780 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.390 -28.388 0.076 28.422 hybrid contribution -0.190 2.395 -0.012 2.403 sum -1.580 -25.993 0.063 26.041 Atomic orbital electron populations 1.70163 1.08154 1.27652 1.51666 1.26061 0.95679 1.03727 0.94827 0.85339 0.79428 0.78495 0.77394 1.17631 1.20861 1.20873 1.21740 0.94123 0.91523 1.50403 0.90451 1.18735 0.93714 0.91981 0.95329 1.21670 0.99423 0.88047 1.05952 1.21705 0.88057 0.85484 0.73430 1.90540 1.16138 1.87048 1.49028 1.42961 1.11538 1.00659 1.72083 1.17877 0.88572 0.86668 1.01428 1.23147 0.98351 0.83137 1.18371 1.42770 1.08013 1.07430 1.43865 1.22755 0.91299 0.91505 1.01344 1.22040 0.94985 0.89904 1.08591 1.96859 1.20787 1.72460 1.97571 1.68146 0.96807 1.38344 1.13061 1.23372 0.98482 0.84153 0.90813 1.22304 0.80449 0.96769 1.08412 1.70225 1.29418 0.96770 1.24732 0.92935 0.99289 0.99283 0.86693 0.86711 0.72560 0.77841 0.77976 0.75016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -29.05 9.11 25.60 0.23 -28.82 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.06 4.26 29.85 0.13 2.19 16 10 C -0.11 -3.95 5.64 29.85 0.17 -3.78 16 11 C 0.52 18.10 7.80 87.66 0.68 18.79 16 12 O -0.55 -23.36 13.09 -3.07 -0.04 -23.40 16 13 N -0.62 -16.99 5.45 -309.15 -1.68 -18.67 16 14 C 0.28 8.18 7.97 131.58 1.05 9.23 16 15 C -0.09 -2.77 10.61 83.52 0.89 -1.88 16 16 N -0.35 -8.49 2.95 -351.53 -1.04 -9.53 16 17 C 0.06 1.14 10.72 83.22 0.89 2.03 16 18 C 0.04 0.81 7.09 83.72 0.59 1.41 16 19 Br 0.04 0.60 33.84 -20.37 -0.69 -0.09 16 20 N -0.45 -8.48 10.39 -190.43 -1.98 -10.46 16 21 C 0.22 3.65 11.33 85.42 0.97 4.62 16 22 C 0.17 3.88 7.84 134.02 1.05 4.93 16 23 N -0.48 -12.76 11.32 -190.99 -2.16 -14.93 16 24 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 25 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 26 H -0.01 -0.66 8.10 -2.39 -0.02 -0.67 16 27 H 0.12 3.50 8.14 -2.38 -0.02 3.48 16 28 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.43 8.77 8.82 -92.71 -0.82 7.95 16 30 H 0.21 6.65 5.82 -2.91 -0.02 6.64 16 31 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.23 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.33 308.31 2.20 -70.13 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.37 Total: 10.11 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 7.11 Total: 8.87 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -6.58 Total: -110.55 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.04 Total: -23.40 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 35 Polarization: 0.60 SS G_CDS: -0.69 Total: -0.09 kcal Total: -72.33 2.20 -70.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813176758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.290 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds