Wall clock time and date at job start Tue Mar 31 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99704 * 2 1 4 4 H 1.48501 * 109.46893 * 240.00001 * 3 2 1 5 5 H 1.48494 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46748 * 120.00040 * 3 2 1 7 7 C 1.37876 * 120.00747 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00688 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99617 * 359.97438 * 7 2 1 10 10 S 1.81391 * 109.47149 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54397 * 68.37844 * 10 9 7 12 12 O 1.42101 * 110.54772 * 291.62600 * 10 9 7 13 13 N 1.65606 * 104.45153 * 180.02562 * 10 9 7 14 14 C 1.34773 * 119.99883 * 65.00001 * 13 10 9 15 15 O 1.21558 * 120.00087 * 0.02562 * 14 13 10 16 16 C 1.47756 * 119.99963 * 180.02562 * 14 13 10 17 17 C 1.40609 * 120.27026 * 0.02562 * 16 14 13 18 18 N 1.30792 * 121.53940 * 179.97438 * 17 16 14 19 19 C 1.33822 * 121.73317 * 359.73258 * 18 17 16 20 20 C 1.40539 * 120.79249 * 179.74245 * 19 18 17 21 21 C 1.36095 * 119.84769 * 180.28530 * 20 19 18 22 22 C 1.39563 * 121.06275 * 0.26033 * 21 20 19 23 23 F 1.35097 * 119.61213 * 179.97438 * 22 21 20 24 24 C 1.36343 * 120.77793 * 359.97190 * 22 21 20 25 25 C 1.40511 * 119.60444 * 0.02562 * 24 22 21 26 26 C 1.39003 * 120.27327 * 179.97438 * 16 14 13 27 27 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46615 * 59.99880 * 9 7 2 29 29 H 1.08997 * 109.47384 * 300.00427 * 9 7 2 30 30 H 0.96996 * 119.99836 * 245.00265 * 13 10 9 31 31 H 1.07992 * 119.22704 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.07845 * 0.57063 * 20 19 18 33 33 H 1.08002 * 119.46826 * 180.27526 * 21 20 19 34 34 H 1.08001 * 120.20175 * 180.02562 * 24 22 21 35 35 H 1.08005 * 121.01321 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4300 -3.8778 -0.0021 11 8 3.1277 -3.9387 1.2344 12 8 3.1259 -3.9376 -1.2396 13 7 1.4798 -5.2341 -0.0027 14 6 0.6887 -5.5021 -1.0603 15 8 0.6730 -4.7486 -2.0141 16 6 -0.1596 -6.7119 -1.0606 17 6 -0.1463 -7.5871 0.0398 18 7 -0.8874 -8.6646 0.0660 19 6 -1.6985 -8.9858 -0.9488 20 6 -2.4823 -10.1514 -0.9021 21 6 -3.2962 -10.4626 -1.9475 22 6 -3.3645 -9.6438 -3.0756 23 9 -4.1822 -9.9811 -4.0968 24 6 -2.6156 -8.5075 -3.1593 25 6 -1.7648 -8.1571 -2.0974 26 6 -0.9781 -6.9936 -2.1483 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6249 -2.5571 0.8896 30 1 1.4925 -5.8355 0.7582 31 1 0.4900 -7.3641 0.8833 32 1 -2.4423 -10.7963 -0.0367 33 1 -3.8992 -11.3575 -1.9032 34 1 -2.6760 -7.8804 -4.0366 35 1 -1.0089 -6.3381 -3.0061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821583720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:36 Heat of formation + Delta-G solvation = -99.126941 kcal Electronic energy + Delta-G solvation = -25564.467100 eV Core-core repulsion = 21376.311136 eV Total energy + Delta-G solvation = -4188.155964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.36308 -41.39231 -39.74903 -37.17931 -36.31152 -35.26445 -34.39938 -33.95172 -33.39517 -31.08109 -30.26717 -29.10978 -25.61573 -24.40913 -23.59342 -22.80415 -22.09671 -19.49872 -19.27064 -18.37748 -17.92010 -17.28778 -17.12991 -16.48511 -16.11831 -15.82669 -15.67624 -15.20528 -15.08903 -14.90977 -14.68374 -14.38592 -14.18518 -14.13351 -13.70399 -13.54436 -13.12613 -12.57712 -12.24941 -12.02534 -11.88038 -11.86383 -11.51937 -11.37573 -11.27967 -11.04384 -10.91801 -10.74217 -10.61659 -10.58145 -9.94287 -9.83069 -9.28685 -9.22614 -8.74620 -8.73649 -6.36594 -4.48311 -0.31367 0.04918 0.92310 1.32424 1.95726 2.71924 2.99706 3.22542 3.24983 3.29468 3.58076 3.61568 3.72250 4.00195 4.08500 4.20855 4.28303 4.34516 4.38995 4.50195 4.59649 4.87044 4.94189 5.02038 5.10587 5.18383 5.29921 5.36382 5.54894 5.57544 5.64706 5.95144 6.22823 6.50156 6.68331 6.84472 7.34343 7.37121 7.52076 7.69898 8.52589 9.19479 10.75051 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002647 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.903954 B =10577.332773 C =11317.288881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.071 0.929 9 C -0.402 4.402 10 S 2.552 3.448 11 O -0.964 6.964 12 O -0.949 6.949 13 N -1.056 6.056 14 C 0.585 3.415 15 O -0.477 6.477 16 C -0.186 4.186 17 C 0.167 3.833 18 N -0.468 5.468 19 C 0.134 3.866 20 C -0.064 4.064 21 C -0.123 4.123 22 C 0.100 3.900 23 F -0.135 7.135 24 C -0.121 4.121 25 C -0.091 4.091 26 C 0.019 3.981 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.423 0.577 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 -20.541 -1.915 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.539 4.539 10 S 2.655 3.345 11 O -0.955 6.955 12 O -0.939 6.939 13 N -0.815 5.815 14 C 0.371 3.629 15 O -0.348 6.348 16 C -0.193 4.193 17 C -0.007 4.007 18 N -0.175 5.175 19 C 0.012 3.988 20 C -0.083 4.083 21 C -0.143 4.143 22 C 0.081 3.919 23 F -0.113 7.113 24 C -0.140 4.140 25 C -0.093 4.093 26 C -0.007 4.007 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.258 0.742 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.547 -20.607 -1.989 22.036 hybrid contribution -0.420 1.173 -0.407 1.311 sum -7.968 -19.434 -2.396 21.140 Atomic orbital electron populations 1.69938 1.06279 1.27942 1.47108 1.24915 0.95035 0.99584 0.93317 0.86394 0.79622 0.81238 0.79499 1.19335 1.20665 1.19373 1.20239 0.92741 0.88397 1.56222 0.91106 1.27596 1.09799 1.09011 1.07502 1.07260 0.77273 0.75833 0.74168 1.93532 1.70920 1.85803 1.45232 1.93538 1.70713 1.85071 1.44619 1.55504 1.55833 1.44036 1.26114 1.17767 0.78429 0.85056 0.81688 1.91009 1.63534 1.47837 1.32416 1.20962 1.02135 0.98360 0.97879 1.23131 0.93700 0.87978 0.95880 1.67976 1.05898 1.17243 1.26430 1.19060 0.95172 0.94850 0.89694 1.20722 0.93824 0.94936 0.98806 1.21005 1.00298 1.00551 0.92489 1.17355 0.92783 0.95546 0.86233 1.91541 1.70226 1.92158 1.57399 1.21023 0.96456 0.96879 0.99681 1.18509 0.98944 0.96425 0.95466 1.22049 0.88438 0.93047 0.97200 0.92040 0.88330 0.89545 0.74172 0.81432 0.83188 0.83633 0.83285 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 13.29 55.43 0.74 -23.92 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.69 9.13 -34.44 -0.31 -15.00 16 8 H 0.07 1.88 7.71 -52.49 -0.40 1.48 16 9 C -0.40 -9.65 5.64 36.01 0.20 -9.45 16 10 S 2.55 52.77 5.03 -107.50 -0.54 52.23 16 11 O -0.96 -21.03 18.08 -57.54 -1.04 -22.07 16 12 O -0.95 -22.69 17.03 -64.80 -1.10 -23.79 16 13 N -1.06 -15.83 5.56 30.51 0.17 -15.66 16 14 C 0.59 9.10 7.51 -12.37 -0.09 9.01 16 15 O -0.48 -9.22 14.48 -11.84 -0.17 -9.39 16 16 C -0.19 -2.25 5.89 -104.83 -0.62 -2.87 16 17 C 0.17 1.72 10.68 -17.10 -0.18 1.53 16 18 N -0.47 -5.03 10.30 -10.67 -0.11 -5.14 16 19 C 0.13 1.35 6.61 -84.78 -0.56 0.79 16 20 C -0.06 -0.49 9.97 -39.48 -0.39 -0.88 16 21 C -0.12 -0.82 9.92 -39.86 -0.40 -1.22 16 22 C 0.10 0.81 7.24 -39.77 -0.29 0.52 16 23 F -0.13 -1.18 17.25 2.25 0.04 -1.14 16 24 C -0.12 -1.02 9.73 -39.41 -0.38 -1.40 16 25 C -0.09 -0.91 5.74 -106.81 -0.61 -1.52 16 26 C 0.02 0.21 9.46 -38.43 -0.36 -0.15 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.10 2.47 7.19 -51.92 -0.37 2.09 16 29 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 30 H 0.42 4.42 6.81 -34.47 -0.23 4.19 16 31 H 0.17 1.20 6.37 -52.49 -0.33 0.87 16 32 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.16 1.63 7.70 -52.48 -0.40 1.23 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -35.78 331.26 -8.73 -44.50 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.58 Total: 2.21 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -4.10 Total: -18.60 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.80 Total: -44.73 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -2.32 Total: -55.26 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -0.54 Total: 52.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.78 -8.73 -44.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.625 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds