Wall clock time and date at job start Tue Mar 31 2020 21:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99704 * 2 1 4 4 H 1.48501 * 109.46893 * 240.00001 * 3 2 1 5 5 H 1.48494 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46748 * 120.00040 * 3 2 1 7 7 C 1.37876 * 120.00747 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00688 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99617 * 359.97438 * 7 2 1 10 10 S 1.81391 * 109.47149 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54397 * 68.37844 * 10 9 7 12 12 O 1.42101 * 110.54772 * 291.62600 * 10 9 7 13 13 N 1.65606 * 104.45153 * 180.02562 * 10 9 7 14 14 C 1.34773 * 119.99883 * 65.00001 * 13 10 9 15 15 O 1.21558 * 120.00087 * 0.02562 * 14 13 10 16 16 C 1.47756 * 119.99963 * 180.02562 * 14 13 10 17 17 C 1.40609 * 120.27026 * 0.02562 * 16 14 13 18 18 N 1.30792 * 121.53940 * 179.97438 * 17 16 14 19 19 C 1.33822 * 121.73317 * 359.73258 * 18 17 16 20 20 C 1.40539 * 120.79249 * 179.74245 * 19 18 17 21 21 C 1.36095 * 119.84769 * 180.28530 * 20 19 18 22 22 C 1.39563 * 121.06275 * 0.26033 * 21 20 19 23 23 F 1.35097 * 119.61213 * 179.97438 * 22 21 20 24 24 C 1.36343 * 120.77793 * 359.97190 * 22 21 20 25 25 C 1.40511 * 119.60444 * 0.02562 * 24 22 21 26 26 C 1.39003 * 120.27327 * 179.97438 * 16 14 13 27 27 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46615 * 59.99880 * 9 7 2 29 29 H 1.08997 * 109.47384 * 300.00427 * 9 7 2 30 30 H 0.96996 * 119.99836 * 245.00265 * 13 10 9 31 31 H 1.07992 * 119.22704 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.07845 * 0.57063 * 20 19 18 33 33 H 1.08002 * 119.46826 * 180.27526 * 21 20 19 34 34 H 1.08001 * 120.20175 * 180.02562 * 24 22 21 35 35 H 1.08005 * 121.01321 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4300 -3.8778 -0.0021 11 8 3.1277 -3.9387 1.2344 12 8 3.1259 -3.9376 -1.2396 13 7 1.4798 -5.2341 -0.0027 14 6 0.6887 -5.5021 -1.0603 15 8 0.6730 -4.7486 -2.0141 16 6 -0.1596 -6.7119 -1.0606 17 6 -0.1463 -7.5871 0.0398 18 7 -0.8874 -8.6646 0.0660 19 6 -1.6985 -8.9858 -0.9488 20 6 -2.4823 -10.1514 -0.9021 21 6 -3.2962 -10.4626 -1.9475 22 6 -3.3645 -9.6438 -3.0756 23 9 -4.1822 -9.9811 -4.0968 24 6 -2.6156 -8.5075 -3.1593 25 6 -1.7648 -8.1571 -2.0974 26 6 -0.9781 -6.9936 -2.1483 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5566 -0.8904 29 1 0.6249 -2.5571 0.8896 30 1 1.4925 -5.8355 0.7582 31 1 0.4900 -7.3641 0.8833 32 1 -2.4423 -10.7963 -0.0367 33 1 -3.8992 -11.3575 -1.9032 34 1 -2.6760 -7.8804 -4.0366 35 1 -1.0089 -6.3381 -3.0061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821583720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:35 Heat of formation + Delta-G solvation = -125.301080 kcal Electronic energy + Delta-G solvation = -25565.602096 eV Core-core repulsion = 21376.311136 eV Total energy + Delta-G solvation = -4189.290960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02828 -42.25177 -40.92719 -38.17744 -37.85345 -37.07448 -35.77480 -35.42381 -34.73588 -31.88006 -31.09946 -30.96510 -26.53941 -25.58630 -25.17083 -23.51503 -23.19948 -20.96373 -20.26334 -19.34385 -19.13529 -18.73525 -18.14963 -17.95609 -17.52996 -16.79646 -16.68956 -16.48577 -16.37044 -16.10171 -16.06750 -15.67912 -15.21445 -14.76159 -14.53068 -14.44626 -14.33339 -14.13154 -13.83590 -13.67348 -13.49335 -13.21496 -13.11124 -12.72425 -12.59068 -12.54799 -12.48317 -12.15140 -11.92945 -11.81395 -11.77831 -11.10636 -10.78990 -10.75242 -10.01472 -9.43642 -8.42561 -6.61649 -1.10478 -0.78804 -0.69026 0.55755 1.06060 1.38158 1.42238 1.49742 1.51613 1.78752 2.30016 2.67609 2.78897 2.84807 2.92029 3.06391 3.14892 3.32474 3.35204 3.51882 3.58571 3.68637 3.87025 3.96932 4.18520 4.44500 4.61689 4.65212 4.69944 4.75224 4.87963 4.94318 4.98802 5.21657 5.29252 5.59467 5.59984 5.69336 6.27995 6.48204 6.58443 7.10241 8.70054 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.020360 B = 0.002647 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.903954 B =10577.332773 C =11317.288881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.568 4.568 8 H 0.070 0.930 9 C -0.421 4.421 10 S 2.601 3.399 11 O -0.972 6.972 12 O -0.981 6.981 13 N -1.038 6.038 14 C 0.588 3.412 15 O -0.520 6.520 16 C -0.201 4.201 17 C 0.168 3.832 18 N -0.475 5.475 19 C 0.121 3.879 20 C -0.067 4.067 21 C -0.107 4.107 22 C 0.097 3.903 23 F -0.138 7.138 24 C -0.126 4.126 25 C -0.102 4.102 26 C 0.021 3.979 27 H 0.274 0.726 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.445 0.555 31 H 0.196 0.804 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.806 -22.370 -1.311 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.607 4.607 8 H 0.088 0.912 9 C -0.556 4.556 10 S 2.701 3.299 11 O -0.963 6.963 12 O -0.971 6.971 13 N -0.803 5.803 14 C 0.376 3.624 15 O -0.395 6.395 16 C -0.209 4.209 17 C -0.006 4.006 18 N -0.182 5.182 19 C 0.001 3.999 20 C -0.085 4.085 21 C -0.127 4.127 22 C 0.078 3.922 23 F -0.116 7.116 24 C -0.145 4.145 25 C -0.104 4.104 26 C -0.005 4.005 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.286 0.714 31 H 0.212 0.788 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.178 0.822 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.106 -22.447 -1.352 23.904 hybrid contribution -0.391 1.538 -0.652 1.716 sum -8.498 -20.909 -2.004 22.658 Atomic orbital electron populations 1.70025 1.07620 1.29029 1.47771 1.25853 0.95966 1.03201 0.92728 0.85486 0.78690 0.77166 0.79912 1.18931 1.19454 1.18196 1.20701 0.93186 0.90329 1.56499 0.91234 1.27668 1.10724 1.10554 1.06667 1.05475 0.76018 0.75331 0.73048 1.93514 1.71096 1.86183 1.45498 1.93496 1.71514 1.85757 1.46308 1.54888 1.55251 1.42883 1.27302 1.18277 0.77938 0.85526 0.80649 1.90991 1.64911 1.49553 1.34020 1.20672 1.02969 0.97639 0.99583 1.23475 0.93809 0.87383 0.95893 1.68054 1.06260 1.17222 1.26704 1.19491 0.95317 0.95648 0.89489 1.20980 0.93345 0.94332 0.99873 1.21331 0.99393 1.00829 0.91125 1.17541 0.92478 0.95608 0.86598 1.91541 1.70267 1.92134 1.57667 1.21157 0.96221 0.97418 0.99752 1.18553 0.99420 0.96207 0.96230 1.22192 0.88016 0.93387 0.96912 0.91658 0.90131 0.89322 0.71415 0.78769 0.80978 0.80517 0.82163 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.04 13.29 21.45 0.28 -51.75 16 2 C 0.03 1.44 5.46 84.65 0.46 1.91 16 3 Si 0.97 42.63 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.57 -31.81 9.13 25.60 0.23 -31.58 16 8 H 0.07 3.78 7.71 -2.91 -0.02 3.75 16 9 C -0.42 -20.88 5.64 71.24 0.40 -20.48 16 10 S 2.60 108.39 5.03 -56.49 -0.28 108.11 16 11 O -0.97 -41.82 18.08 -127.65 -2.31 -44.13 16 12 O -0.98 -47.56 17.03 -120.71 -2.06 -49.61 16 13 N -1.04 -30.75 5.56 -175.67 -0.98 -31.73 16 14 C 0.59 18.47 7.51 86.76 0.65 19.12 16 15 O -0.52 -20.89 14.48 12.50 0.18 -20.71 16 16 C -0.20 -4.79 5.89 -20.00 -0.12 -4.91 16 17 C 0.17 3.21 10.68 85.43 0.91 4.12 16 18 N -0.48 -9.32 10.30 -187.66 -1.93 -11.25 16 19 C 0.12 2.23 6.61 40.28 0.27 2.49 16 20 C -0.07 -0.82 9.97 22.33 0.22 -0.60 16 21 C -0.11 -1.08 9.92 22.09 0.22 -0.86 16 22 C 0.10 1.36 7.24 22.15 0.16 1.52 16 23 F -0.14 -2.11 17.25 44.97 0.78 -1.33 16 24 C -0.13 -1.96 9.73 22.38 0.22 -1.74 16 25 C -0.10 -1.93 5.74 -21.28 -0.12 -2.05 16 26 C 0.02 0.47 9.46 23.02 0.22 0.68 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.08 4.24 7.19 -2.39 -0.02 4.23 16 29 H 0.09 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.45 8.65 6.81 -96.75 -0.66 8.00 16 31 H 0.20 2.35 6.37 -2.91 -0.02 2.33 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.16 3.40 7.70 -2.91 -0.02 3.38 16 Total: -1.00 -77.87 331.26 -0.04 -77.91 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.52 Total: 12.23 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.73 Total: -32.37 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -2.62 Total: -94.74 kcal Atomic # 8 Polarization: -110.27 SS G_CDS: -4.18 Total: -114.46 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.28 Total: 108.11 kcal Total: -77.87 -0.04 -77.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.392 kcal (2) G-P(sol) polarization free energy of solvation -77.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds