Wall clock time and date at job start Tue Mar 31 2020 20:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99696 * 2 1 4 4 H 1.48493 * 109.47195 * 270.00391 * 3 2 1 5 5 H 1.48505 * 109.46640 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47169 * 149.99659 * 3 2 1 7 7 C 1.37878 * 120.00771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99394 * 0.02562 * 7 2 1 10 10 S 1.81405 * 109.46902 * 180.02562 * 9 7 2 11 11 O 1.42094 * 110.54431 * 68.37470 * 10 9 7 12 12 O 1.42107 * 110.53879 * 291.62121 * 10 9 7 13 13 N 1.65595 * 104.44866 * 180.02562 * 10 9 7 14 14 C 1.34770 * 120.00389 * 64.99531 * 13 10 9 15 15 O 1.21512 * 120.00138 * 0.02562 * 14 13 10 16 16 C 1.48179 * 120.00218 * 179.97438 * 14 13 10 17 17 C 1.39304 * 119.72482 * 180.28070 * 16 14 13 18 18 C 1.38586 * 119.06089 * 180.27762 * 17 16 14 19 19 C 1.38628 * 118.48302 * 359.45318 * 18 17 16 20 20 C 1.38553 * 119.35502 * 0.28010 * 19 18 17 21 21 C 1.50699 * 119.54983 * 179.97438 * 20 19 18 22 22 F 1.39909 * 109.47402 * 89.99611 * 21 20 19 23 23 F 1.39898 * 109.47252 * 209.99866 * 21 20 19 24 24 F 1.39897 * 109.47192 * 330.00080 * 21 20 19 25 25 N 1.31519 * 120.90388 * 359.97438 * 20 19 18 26 26 H 0.96995 * 120.00687 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47512 * 60.00076 * 9 7 2 28 28 H 1.08996 * 109.47052 * 299.99671 * 9 7 2 29 29 H 0.97001 * 119.99613 * 244.99878 * 13 10 9 30 30 H 1.08001 * 120.47262 * 0.02862 * 17 16 14 31 31 H 1.08002 * 120.76134 * 179.73411 * 18 17 16 32 32 H 1.08005 * 120.32045 * 180.30555 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 16 2.4301 -3.8778 -0.0014 11 8 3.1259 -3.9387 1.2360 12 8 3.1278 -3.9376 -1.2380 13 7 1.4799 -5.2340 -0.0035 14 6 0.6903 -5.5021 -1.0623 15 8 0.6760 -4.7488 -2.0157 16 6 -0.1596 -6.7159 -1.0643 17 6 -0.9691 -6.9904 -2.1642 18 6 -1.7628 -8.1264 -2.1491 19 6 -1.7105 -8.9547 -1.0387 20 6 -0.8777 -8.6228 0.0176 21 6 -0.8178 -9.5197 1.2271 22 9 0.1803 -10.4830 1.0446 23 9 -0.5256 -8.7545 2.3612 24 9 -2.0526 -10.1546 1.3985 25 7 -0.1386 -7.5355 -0.0207 26 1 -0.4851 0.8399 0.0004 27 1 0.6249 -2.5563 -0.8919 28 1 0.6243 -2.5575 0.8880 29 1 1.4915 -5.8355 0.7575 30 1 -0.9811 -6.3253 -3.0151 31 1 -2.4040 -8.3635 -2.9852 32 1 -2.3128 -9.8503 -0.9977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409048.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:48 Heat of formation + Delta-G solvation = -219.648926 kcal Electronic energy + Delta-G solvation = -26718.952114 eV Core-core repulsion = 21971.340394 eV Total energy + Delta-G solvation = -4747.611720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.50183 -48.05830 -47.91761 -41.23474 -39.39000 -36.28360 -35.23059 -34.47041 -33.38886 -33.25106 -32.64671 -29.09615 -27.17626 -25.66077 -23.58590 -23.17130 -21.90252 -19.53171 -19.07292 -18.87852 -18.81477 -17.99213 -17.35861 -16.73207 -16.57248 -16.15592 -15.87368 -15.26483 -15.12693 -14.87230 -14.74131 -14.60240 -14.39908 -14.28726 -14.11757 -14.08133 -14.05911 -13.95637 -13.21696 -12.57469 -12.54047 -12.23258 -12.00173 -11.48861 -11.34256 -11.24816 -10.93090 -10.79962 -10.68641 -10.67000 -10.57838 -10.17781 -9.99033 -9.85242 -9.21792 -8.72891 -6.35322 -4.46785 -0.07668 0.36593 0.95332 1.99671 2.11182 2.92299 3.10171 3.14698 3.21635 3.26781 3.32357 3.39342 3.83738 4.00535 4.16225 4.23490 4.27730 4.34285 4.53441 4.67105 4.74117 4.94005 5.09204 5.18936 5.29321 5.42567 5.76123 6.50843 6.68663 6.78414 6.99166 7.38651 7.47994 7.70976 8.54180 9.20852 10.76444 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003073 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.552375 B = 9109.922889 C = 9415.208793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.072 0.928 9 C -0.403 4.403 10 S 2.550 3.450 11 O -0.962 6.962 12 O -0.950 6.950 13 N -1.044 6.044 14 C 0.597 3.403 15 O -0.471 6.471 16 C 0.087 3.913 17 C -0.075 4.075 18 C -0.075 4.075 19 C -0.101 4.101 20 C 0.035 3.965 21 C 0.525 3.475 22 F -0.169 7.169 23 F -0.160 7.160 24 F -0.170 7.170 25 N -0.414 5.414 26 H 0.269 0.731 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.434 0.566 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 -20.732 -1.852 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.090 0.910 9 C -0.540 4.540 10 S 2.652 3.348 11 O -0.952 6.952 12 O -0.940 6.940 13 N -0.803 5.803 14 C 0.380 3.620 15 O -0.340 6.340 16 C -0.054 4.054 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.107 4.107 21 C 0.470 3.530 22 F -0.150 7.150 23 F -0.141 7.141 24 F -0.152 7.152 25 N -0.126 5.126 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.270 0.730 30 H 0.185 0.815 31 H 0.178 0.822 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.987 -19.936 -1.832 21.204 hybrid contribution -0.808 0.230 0.040 0.841 sum -7.795 -19.705 -1.792 21.267 Atomic orbital electron populations 1.69948 1.06282 1.27816 1.47237 1.24919 0.95042 0.99593 0.93318 0.86323 0.79976 0.81553 0.78823 1.19810 1.20574 1.19017 1.20289 0.92803 0.88361 1.56064 0.91020 1.27609 1.09820 1.09020 1.07517 1.07331 0.77360 0.75834 0.74237 1.93536 1.70932 1.85717 1.45044 1.93535 1.70679 1.85143 1.44691 1.55395 1.54790 1.43878 1.26231 1.17542 0.78357 0.84088 0.81995 1.91024 1.63433 1.46956 1.32607 1.21120 0.98219 0.95092 0.90971 1.22519 0.91786 0.96684 0.98596 1.21726 0.97436 0.92785 0.98114 1.22112 0.96631 1.00740 0.92587 1.20913 0.99069 0.95292 0.95411 1.17768 0.73968 0.78603 0.82679 1.93259 1.61523 1.64966 1.95260 1.93272 1.93050 1.75019 1.52727 1.93216 1.43150 1.83022 1.95777 1.66932 1.17949 1.01703 1.25986 0.92109 0.88340 0.89477 0.73009 0.81533 0.82216 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 13.29 55.43 0.74 -24.10 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.92 9.13 -34.44 -0.31 -15.23 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -9.95 5.64 36.01 0.20 -9.75 16 10 S 2.55 55.92 5.03 -107.50 -0.54 55.38 16 11 O -0.96 -22.40 18.08 -57.54 -1.04 -23.44 16 12 O -0.95 -23.41 17.03 -64.80 -1.10 -24.51 16 13 N -1.04 -17.99 5.59 30.61 0.17 -17.82 16 14 C 0.60 9.97 7.55 -12.18 -0.09 9.87 16 15 O -0.47 -9.13 14.42 -11.80 -0.17 -9.31 16 16 C 0.09 1.13 6.75 -83.01 -0.56 0.56 16 17 C -0.08 -0.71 9.63 -39.06 -0.38 -1.08 16 18 C -0.07 -0.46 10.17 -39.31 -0.40 -0.86 16 19 C -0.10 -0.67 9.44 -39.32 -0.37 -1.04 16 20 C 0.04 0.35 6.30 -82.61 -0.52 -0.17 16 21 C 0.53 5.07 3.43 36.01 0.12 5.19 16 22 F -0.17 -1.67 17.30 2.25 0.04 -1.64 16 23 F -0.16 -1.82 17.03 2.25 0.04 -1.78 16 24 F -0.17 -1.41 16.44 2.25 0.04 -1.38 16 25 N -0.41 -5.13 9.14 -6.06 -0.06 -5.19 16 26 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 27 H 0.10 2.50 7.19 -51.93 -0.37 2.12 16 28 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 29 H 0.43 6.30 8.12 -34.46 -0.28 6.02 16 30 H 0.17 1.40 7.64 -52.49 -0.40 1.00 16 31 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 32 H 0.16 0.57 7.60 -52.48 -0.40 0.17 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -35.18 320.47 -6.32 -41.50 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -1.84 Total: 1.93 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.40 Total: -10.44 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.85 Total: -47.11 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.31 Total: -57.26 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 55.92 SS G_CDS: -0.54 Total: 55.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.18 -6.32 -41.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409048.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.151 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds