Wall clock time and date at job start Tue Mar 31 2020 20:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99696 * 2 1 4 4 H 1.48493 * 109.47195 * 270.00391 * 3 2 1 5 5 H 1.48505 * 109.46640 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47169 * 149.99659 * 3 2 1 7 7 C 1.37878 * 120.00771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99394 * 0.02562 * 7 2 1 10 10 S 1.81405 * 109.46902 * 180.02562 * 9 7 2 11 11 O 1.42094 * 110.54431 * 68.37470 * 10 9 7 12 12 O 1.42107 * 110.53879 * 291.62121 * 10 9 7 13 13 N 1.65595 * 104.44866 * 180.02562 * 10 9 7 14 14 C 1.34770 * 120.00389 * 64.99531 * 13 10 9 15 15 O 1.21512 * 120.00138 * 0.02562 * 14 13 10 16 16 C 1.48179 * 120.00218 * 179.97438 * 14 13 10 17 17 C 1.39304 * 119.72482 * 180.28070 * 16 14 13 18 18 C 1.38586 * 119.06089 * 180.27762 * 17 16 14 19 19 C 1.38628 * 118.48302 * 359.45318 * 18 17 16 20 20 C 1.38553 * 119.35502 * 0.28010 * 19 18 17 21 21 C 1.50699 * 119.54983 * 179.97438 * 20 19 18 22 22 F 1.39909 * 109.47402 * 89.99611 * 21 20 19 23 23 F 1.39898 * 109.47252 * 209.99866 * 21 20 19 24 24 F 1.39897 * 109.47192 * 330.00080 * 21 20 19 25 25 N 1.31519 * 120.90388 * 359.97438 * 20 19 18 26 26 H 0.96995 * 120.00687 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47512 * 60.00076 * 9 7 2 28 28 H 1.08996 * 109.47052 * 299.99671 * 9 7 2 29 29 H 0.97001 * 119.99613 * 244.99878 * 13 10 9 30 30 H 1.08001 * 120.47262 * 0.02862 * 17 16 14 31 31 H 1.08002 * 120.76134 * 179.73411 * 18 17 16 32 32 H 1.08005 * 120.32045 * 180.30555 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 16 2.4301 -3.8778 -0.0014 11 8 3.1259 -3.9387 1.2360 12 8 3.1278 -3.9376 -1.2380 13 7 1.4799 -5.2340 -0.0035 14 6 0.6903 -5.5021 -1.0623 15 8 0.6760 -4.7488 -2.0157 16 6 -0.1596 -6.7159 -1.0643 17 6 -0.9691 -6.9904 -2.1642 18 6 -1.7628 -8.1264 -2.1491 19 6 -1.7105 -8.9547 -1.0387 20 6 -0.8777 -8.6228 0.0176 21 6 -0.8178 -9.5197 1.2271 22 9 0.1803 -10.4830 1.0446 23 9 -0.5256 -8.7545 2.3612 24 9 -2.0526 -10.1546 1.3985 25 7 -0.1386 -7.5355 -0.0207 26 1 -0.4851 0.8399 0.0004 27 1 0.6249 -2.5563 -0.8919 28 1 0.6243 -2.5575 0.8880 29 1 1.4915 -5.8355 0.7575 30 1 -0.9811 -6.3253 -3.0151 31 1 -2.4040 -8.3635 -2.9852 32 1 -2.3128 -9.8503 -0.9977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409048.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:47 Heat of formation + Delta-G solvation = -246.783187 kcal Electronic energy + Delta-G solvation = -26720.128743 eV Core-core repulsion = 21971.340394 eV Total energy + Delta-G solvation = -4748.788350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.25194 -48.77445 -48.72021 -42.17081 -40.57942 -38.17240 -37.13412 -35.86339 -35.45443 -34.01404 -33.45643 -31.14644 -27.95778 -26.60448 -25.61861 -23.91292 -23.02659 -20.94884 -20.26947 -19.65139 -19.62483 -19.25880 -18.91435 -18.40049 -17.62441 -17.36085 -17.07024 -16.72830 -16.53277 -16.19205 -16.13368 -15.66192 -15.50495 -15.14733 -14.96810 -14.87100 -14.85976 -14.72169 -14.52138 -14.18890 -13.94550 -13.71754 -13.51129 -13.27797 -13.23990 -13.17224 -12.74980 -12.58043 -12.18613 -12.02068 -11.82070 -11.30338 -11.17263 -11.07215 -10.80694 -10.75876 -8.44308 -6.64123 -0.89375 -0.81279 -0.32390 1.03134 1.24828 1.37402 1.40182 1.45797 1.52214 2.25132 2.25747 2.30778 2.54109 2.70130 2.89152 2.93875 3.24657 3.26295 3.47862 3.61995 3.73831 3.82028 3.99942 4.17938 4.58971 4.69395 4.75109 4.80079 5.18562 5.26894 5.44943 5.65433 5.99198 6.28040 6.44955 7.07948 8.68711 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.003073 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.552375 B = 9109.922889 C = 9415.208793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.571 4.571 8 H 0.069 0.931 9 C -0.416 4.416 10 S 2.593 3.407 11 O -0.976 6.976 12 O -0.978 6.978 13 N -1.036 6.036 14 C 0.593 3.407 15 O -0.505 6.505 16 C 0.058 3.942 17 C -0.073 4.073 18 C -0.052 4.052 19 C -0.079 4.079 20 C 0.019 3.981 21 C 0.528 3.472 22 F -0.171 7.171 23 F -0.175 7.175 24 F -0.159 7.159 25 N -0.440 5.440 26 H 0.276 0.724 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.446 0.554 30 H 0.173 0.827 31 H 0.210 0.790 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 -22.346 -2.614 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.609 4.609 8 H 0.087 0.913 9 C -0.551 4.551 10 S 2.694 3.306 11 O -0.967 6.967 12 O -0.968 6.968 13 N -0.799 5.799 14 C 0.379 3.621 15 O -0.377 6.377 16 C -0.082 4.082 17 C -0.094 4.094 18 C -0.077 4.077 19 C -0.098 4.098 20 C -0.124 4.124 21 C 0.472 3.528 22 F -0.153 7.153 23 F -0.156 7.156 24 F -0.141 7.141 25 N -0.152 5.152 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.285 0.715 30 H 0.190 0.810 31 H 0.227 0.773 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.372 -21.553 -2.574 23.265 hybrid contribution -0.499 0.533 0.276 0.780 sum -8.871 -21.020 -2.298 22.931 Atomic orbital electron populations 1.70027 1.07617 1.29090 1.47557 1.25872 0.96016 1.03212 0.92562 0.85388 0.78947 0.77256 0.79353 1.18927 1.19094 1.18405 1.20725 0.93199 0.90203 1.56819 0.91252 1.27633 1.10500 1.10254 1.06737 1.05747 0.76320 0.75436 0.73144 1.93505 1.71404 1.86192 1.45568 1.93492 1.71452 1.85796 1.46040 1.54903 1.54828 1.42724 1.27438 1.18216 0.77930 0.85111 0.80804 1.90994 1.64538 1.48553 1.33628 1.20571 1.00004 0.94476 0.93133 1.22747 0.91269 0.97978 0.97414 1.22267 0.96060 0.90438 0.98983 1.22623 0.94757 1.01447 0.90986 1.21143 0.99912 0.94801 0.96520 1.17779 0.74193 0.78507 0.82285 1.93253 1.61774 1.65030 1.95223 1.93241 1.93225 1.75489 1.53637 1.93234 1.42353 1.82773 1.95710 1.66699 1.19344 1.02772 1.26343 0.91533 0.89684 0.89575 0.71470 0.80960 0.77303 0.78677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.22 13.29 21.45 0.28 -51.94 16 2 C 0.03 1.52 5.46 84.66 0.46 1.98 16 3 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.57 -32.68 9.13 25.60 0.23 -32.44 16 8 H 0.07 3.87 7.71 -2.91 -0.02 3.85 16 9 C -0.42 -21.44 5.64 71.24 0.40 -21.04 16 10 S 2.59 117.39 5.03 -56.49 -0.28 117.10 16 11 O -0.98 -46.35 18.08 -127.65 -2.31 -48.66 16 12 O -0.98 -49.57 17.03 -120.71 -2.06 -51.62 16 13 N -1.04 -36.84 5.59 -175.38 -0.98 -37.83 16 14 C 0.59 20.37 7.55 86.89 0.66 21.03 16 15 O -0.51 -20.37 14.42 12.65 0.18 -20.19 16 16 C 0.06 1.48 6.75 41.91 0.28 1.76 16 17 C -0.07 -1.23 9.63 22.61 0.22 -1.01 16 18 C -0.05 -0.40 10.17 22.45 0.23 -0.17 16 19 C -0.08 -0.71 9.44 22.44 0.21 -0.50 16 20 C 0.02 0.33 6.30 42.68 0.27 0.60 16 21 C 0.53 9.31 3.43 71.24 0.24 9.56 16 22 F -0.17 -3.15 17.30 44.97 0.78 -2.37 16 23 F -0.17 -3.91 17.03 44.97 0.77 -3.14 16 24 F -0.16 -2.23 16.44 44.97 0.74 -1.49 16 25 N -0.44 -10.59 9.14 -173.09 -1.58 -12.17 16 26 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.09 4.56 7.19 -2.39 -0.02 4.54 16 28 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 29 H 0.45 13.36 8.12 -96.75 -0.79 12.58 16 30 H 0.17 2.63 7.64 -2.91 -0.02 2.61 16 31 H 0.21 -0.40 8.06 -2.91 -0.02 -0.42 16 32 H 0.20 0.25 7.60 -2.91 -0.02 0.23 16 Total: -1.00 -78.68 320.47 1.21 -77.47 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.44 Total: 10.01 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.21 Total: -20.23 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -2.28 Total: -101.93 kcal Atomic # 8 Polarization: -116.29 SS G_CDS: -4.18 Total: -120.47 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 2.28 Total: -7.01 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 117.39 SS G_CDS: -0.28 Total: 117.10 kcal Total: -78.68 1.21 -77.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409048.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.312 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds