Wall clock time and date at job start Tue Mar 31 2020 21:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48498 * 109.47139 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.46982 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.47157 * 149.99769 * 3 2 1 7 7 C 1.37877 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00295 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99728 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00318 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99780 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.47237 * 180.02562 * 13 11 10 15 15 C 1.35797 * 119.81397 * 270.02235 * 14 13 11 16 16 N 1.29974 * 121.86946 * 180.02562 * 15 14 13 17 17 C 1.35034 * 121.70124 * 359.95448 * 16 15 14 18 18 S 1.75870 * 130.81537 * 180.33180 * 17 16 15 19 19 C 1.75347 * 92.15548 * 180.02562 * 18 17 16 20 20 N 1.48065 * 124.37296 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99814 * 179.70093 * 20 19 18 22 22 O 1.21799 * 119.99983 * 359.42979 * 20 19 18 23 23 C 1.32027 * 111.25518 * 359.69552 * 19 18 17 24 24 C 1.39182 * 119.56011 * 0.02562 * 17 16 15 25 25 C 1.34745 * 119.81765 * 89.99660 * 14 13 11 26 26 O 1.21893 * 120.64245 * 0.02884 * 25 14 13 27 27 H 0.97006 * 119.99993 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47214 * 59.99736 * 9 7 2 29 29 H 1.09001 * 109.46729 * 299.99945 * 9 7 2 30 30 H 0.97000 * 120.00099 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47077 * 60.00018 * 13 11 10 32 32 H 1.09001 * 109.47289 * 299.99968 * 13 11 10 33 33 H 1.08007 * 119.06253 * 359.97438 * 15 14 13 34 34 H 1.07993 * 122.60508 * 180.25159 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8216 0.0024 12 8 6.1129 -1.8999 0.0011 13 6 5.8271 -4.2425 0.0030 14 7 7.2921 -4.2425 0.0036 15 6 7.9678 -4.2424 -1.1743 16 7 9.2668 -4.2429 -1.2203 17 6 10.0166 -4.2428 -0.0973 18 16 11.7618 -4.2357 0.1197 19 6 11.6112 -4.2420 1.8667 20 7 12.7569 -4.2405 2.8045 21 8 12.5600 -4.2398 4.0065 22 8 13.8963 -4.2450 2.3741 23 6 10.3441 -4.2424 2.2378 24 6 9.3910 -4.2426 1.1460 25 6 7.9616 -4.2422 1.1730 26 8 7.3601 -4.2424 2.2332 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8889 30 1 3.3694 -3.3126 0.0021 31 1 5.4638 -4.7566 -0.8869 32 1 5.4637 -4.7560 0.8931 33 1 7.4100 -4.2426 -2.0991 34 1 10.0414 -4.2420 3.2744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842572592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:53 Heat of formation + Delta-G solvation = 0.399169 kcal Electronic energy + Delta-G solvation = -25426.442924 eV Core-core repulsion = 21262.522697 eV Total energy + Delta-G solvation = -4163.920227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50475 -42.31765 -39.38916 -38.21773 -37.52939 -36.85536 -34.86299 -34.52653 -32.58292 -30.97899 -29.80156 -27.65990 -27.37139 -25.12471 -24.31784 -22.59458 -21.97536 -20.57759 -20.44585 -19.18679 -18.54586 -18.24604 -18.00968 -17.92982 -17.40263 -16.68433 -16.48724 -15.84298 -15.36394 -15.24365 -15.03305 -14.52008 -14.29919 -14.20564 -13.91148 -13.38649 -13.11596 -12.97608 -12.51963 -12.19574 -12.11517 -11.99232 -11.72721 -11.53153 -11.21534 -11.16546 -10.91781 -10.89798 -10.66239 -10.12401 -9.74406 -9.65045 -9.45165 -8.95253 -8.93174 -8.49210 -6.35485 -4.39539 -0.95215 -0.19889 0.12829 0.73881 1.02969 1.07247 1.40360 1.75402 2.67728 2.82622 3.15465 3.23334 3.30357 3.36428 3.52255 3.66956 3.89914 4.12594 4.20165 4.38848 4.49934 4.61751 4.81845 4.91138 4.99659 5.01937 5.50463 5.76344 5.84718 6.55065 6.83224 6.85672 6.88204 7.16316 7.18770 7.20332 7.82867 8.23587 8.42098 8.63324 9.23034 10.76094 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002397 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.602397 B =11678.318250 C =12035.018699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.221 3.779 10 N -0.692 5.692 11 C 0.486 3.514 12 O -0.547 6.547 13 C 0.068 3.932 14 N -0.512 5.512 15 C 0.435 3.565 16 N -0.514 5.514 17 C 0.119 3.881 18 S 0.324 5.676 19 C -0.204 4.204 20 N 0.064 4.936 21 O -0.141 6.141 22 O -0.152 6.152 23 C 0.049 3.951 24 C -0.254 4.254 25 C 0.571 3.429 26 O -0.497 6.497 27 H 0.269 0.731 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.401 0.599 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.223 0.777 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.152 -13.738 -3.900 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.099 3.901 10 N -0.341 5.341 11 C 0.268 3.732 12 O -0.426 6.426 13 C -0.058 4.058 14 N -0.230 5.230 15 C 0.146 3.854 16 N -0.237 5.237 17 C -0.117 4.117 18 S 0.587 5.413 19 C -0.403 4.403 20 N 0.585 4.415 21 O -0.359 6.359 22 O -0.367 6.367 23 C 0.015 3.985 24 C -0.271 4.271 25 C 0.364 3.636 26 O -0.371 6.371 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.235 0.765 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.239 0.761 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.411 -12.918 -5.189 24.707 hybrid contribution -1.441 0.685 1.867 2.456 sum 18.970 -12.233 -3.322 22.816 Atomic orbital electron populations 1.69865 1.06201 1.27634 1.48755 1.24779 0.94801 0.99175 0.93703 0.86835 0.80571 0.83306 0.79084 1.19758 1.20710 1.18618 1.21022 0.88189 0.95358 1.54089 0.90061 1.19580 0.95557 0.77842 0.97078 1.46125 1.04949 1.11775 1.71231 1.20409 0.84109 0.90038 0.78620 1.90735 1.55437 1.45535 1.50859 1.22073 0.76883 0.98479 1.08348 1.46262 1.09563 1.59614 1.07527 1.25300 0.88030 0.81788 0.90272 1.68079 1.03693 1.25827 1.26150 1.24368 1.00503 0.94910 0.91954 1.84581 0.94268 1.71517 0.90980 1.25209 0.90826 1.27583 0.96723 1.42426 1.00732 0.97547 1.00755 1.94603 1.91576 1.53308 0.96382 1.94584 1.05907 1.53958 1.82282 1.20626 0.88459 0.87253 1.02165 1.20301 0.94192 1.20207 0.92372 1.16308 0.86383 0.77376 0.83536 1.90989 1.69749 1.48041 1.28294 0.92067 0.95472 0.95832 0.76518 0.84892 0.84735 0.76094 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.55 -13.98 9.83 -34.44 -0.34 -14.32 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 9 C 0.22 4.94 4.50 -5.20 -0.02 4.92 16 10 N -0.69 -11.66 5.55 -61.48 -0.34 -12.00 16 11 C 0.49 7.40 7.90 -10.98 -0.09 7.32 16 12 O -0.55 -10.81 16.43 5.56 0.09 -10.72 16 13 C 0.07 0.61 5.84 -5.19 -0.03 0.58 16 14 N -0.51 -5.21 2.08 -121.71 -0.25 -5.46 16 15 C 0.44 3.30 11.48 -90.12 -1.03 2.26 16 16 N -0.51 -4.77 10.42 -12.60 -0.13 -4.90 16 17 C 0.12 1.23 7.70 -15.79 -0.12 1.11 16 18 S 0.32 2.85 22.98 -107.50 -2.47 0.38 16 19 C -0.20 -2.20 7.39 -11.52 -0.09 -2.29 16 20 N 0.06 0.78 4.46 33.12 0.15 0.93 16 21 O -0.14 -1.82 18.85 -29.46 -0.56 -2.38 16 22 O -0.15 -1.88 19.03 -29.46 -0.56 -2.44 16 23 C 0.05 0.54 9.89 -38.85 -0.38 0.16 16 24 C -0.25 -3.00 6.08 -105.07 -0.64 -3.64 16 25 C 0.57 7.53 7.50 -14.44 -0.11 7.42 16 26 O -0.50 -8.05 16.68 5.02 0.08 -7.97 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 30 H 0.40 5.55 8.32 -40.82 -0.34 5.21 16 31 H 0.13 0.47 8.01 -51.93 -0.42 0.05 16 32 H 0.13 1.16 7.43 -51.93 -0.39 0.77 16 33 H 0.22 0.57 8.02 -52.48 -0.42 0.15 16 34 H 0.18 1.86 7.95 -52.49 -0.42 1.44 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -35.54 332.88 -8.14 -43.68 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.95 Total: 5.57 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.20 Total: -45.87 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.94 Total: -23.51 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.47 Total: 0.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.54 -8.14 -43.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842572592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.082 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds