Wall clock time and date at job start Tue Mar 31 2020 21:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48498 * 109.47139 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.46982 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.47157 * 149.99769 * 3 2 1 7 7 C 1.37877 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00295 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47271 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99728 * 179.97438 * 10 9 7 12 12 O 1.21272 * 120.00318 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99780 * 180.02562 * 11 10 9 14 14 N 1.46502 * 109.47237 * 180.02562 * 13 11 10 15 15 C 1.35797 * 119.81397 * 270.02235 * 14 13 11 16 16 N 1.29974 * 121.86946 * 180.02562 * 15 14 13 17 17 C 1.35034 * 121.70124 * 359.95448 * 16 15 14 18 18 S 1.75870 * 130.81537 * 180.33180 * 17 16 15 19 19 C 1.75347 * 92.15548 * 180.02562 * 18 17 16 20 20 N 1.48065 * 124.37296 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99814 * 179.70093 * 20 19 18 22 22 O 1.21799 * 119.99983 * 359.42979 * 20 19 18 23 23 C 1.32027 * 111.25518 * 359.69552 * 19 18 17 24 24 C 1.39182 * 119.56011 * 0.02562 * 17 16 15 25 25 C 1.34745 * 119.81765 * 89.99660 * 14 13 11 26 26 O 1.21893 * 120.64245 * 0.02884 * 25 14 13 27 27 H 0.97006 * 119.99993 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47214 * 59.99736 * 9 7 2 29 29 H 1.09001 * 109.46729 * 299.99945 * 9 7 2 30 30 H 0.97000 * 120.00099 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47077 * 60.00018 * 13 11 10 32 32 H 1.09001 * 109.47289 * 299.99968 * 13 11 10 33 33 H 1.08007 * 119.06253 * 359.97438 * 15 14 13 34 34 H 1.07993 * 122.60508 * 180.25159 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8216 0.0024 12 8 6.1129 -1.8999 0.0011 13 6 5.8271 -4.2425 0.0030 14 7 7.2921 -4.2425 0.0036 15 6 7.9678 -4.2424 -1.1743 16 7 9.2668 -4.2429 -1.2203 17 6 10.0166 -4.2428 -0.0973 18 16 11.7618 -4.2357 0.1197 19 6 11.6112 -4.2420 1.8667 20 7 12.7569 -4.2405 2.8045 21 8 12.5600 -4.2398 4.0065 22 8 13.8963 -4.2450 2.3741 23 6 10.3441 -4.2424 2.2378 24 6 9.3910 -4.2426 1.1460 25 6 7.9616 -4.2422 1.1730 26 8 7.3601 -4.2424 2.2332 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8889 30 1 3.3694 -3.3126 0.0021 31 1 5.4638 -4.7566 -0.8869 32 1 5.4637 -4.7560 0.8931 33 1 7.4100 -4.2426 -2.0991 34 1 10.0414 -4.2420 3.2744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842572592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:52 Heat of formation + Delta-G solvation = -24.805951 kcal Electronic energy + Delta-G solvation = -25427.535900 eV Core-core repulsion = 21262.522697 eV Total energy + Delta-G solvation = -4165.013203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.056 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.40886 -43.18344 -40.62328 -39.15924 -38.41167 -37.80540 -36.28542 -35.54823 -34.46994 -31.82653 -31.05529 -29.09289 -28.22314 -26.08010 -25.12913 -24.14299 -23.02284 -21.76731 -21.42051 -20.11292 -19.55175 -19.37458 -18.93097 -18.90950 -18.27606 -18.22345 -17.31091 -16.98709 -16.79417 -16.48394 -16.06110 -15.77305 -15.28172 -15.01771 -14.94893 -14.74406 -14.50084 -14.37307 -13.86377 -13.30303 -13.12013 -12.98577 -12.97324 -12.72822 -12.66761 -12.52068 -12.09667 -11.98959 -11.79533 -11.66937 -11.49004 -10.97345 -10.93703 -10.26158 -10.04325 -9.74018 -8.41635 -6.48243 -1.77404 -0.98181 -0.75695 -0.05382 0.16712 0.18181 0.62209 0.96457 1.29573 1.34229 1.43941 1.51060 1.95358 2.25155 2.40543 2.71691 2.89674 2.94324 3.10688 3.48980 3.61121 3.69157 3.77121 3.96756 4.16528 4.21430 4.73314 4.83702 4.87448 4.98125 5.02164 5.23777 5.40577 6.03798 6.15201 6.21461 6.28909 6.53316 6.70461 7.11547 7.28339 8.72714 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.002397 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.602397 B =11678.318250 C =12035.018699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.232 3.768 10 N -0.693 5.693 11 C 0.486 3.514 12 O -0.594 6.594 13 C 0.081 3.919 14 N -0.514 5.514 15 C 0.445 3.555 16 N -0.521 5.521 17 C 0.121 3.879 18 S 0.380 5.620 19 C -0.215 4.215 20 N 0.064 4.936 21 O -0.169 6.169 22 O -0.148 6.148 23 C 0.046 3.954 24 C -0.280 4.280 25 C 0.563 3.437 26 O -0.541 6.541 27 H 0.272 0.728 28 H 0.004 0.996 29 H 0.020 0.980 30 H 0.416 0.584 31 H 0.203 0.797 32 H 0.142 0.858 33 H 0.278 0.722 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.137 -14.706 -6.215 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.108 3.892 10 N -0.343 5.343 11 C 0.272 3.728 12 O -0.475 6.475 13 C -0.043 4.043 14 N -0.231 5.231 15 C 0.158 3.842 16 N -0.244 5.244 17 C -0.117 4.117 18 S 0.643 5.357 19 C -0.415 4.415 20 N 0.583 4.417 21 O -0.381 6.381 22 O -0.366 6.366 23 C 0.012 3.988 24 C -0.297 4.297 25 C 0.357 3.643 26 O -0.418 6.418 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.253 0.747 31 H 0.220 0.780 32 H 0.160 0.840 33 H 0.293 0.707 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 21.394 -13.930 -7.494 26.606 hybrid contribution -1.717 0.926 2.485 3.160 sum 19.677 -13.004 -5.009 24.111 Atomic orbital electron populations 1.69969 1.07608 1.28537 1.50667 1.25544 0.95453 1.02465 0.93811 0.85938 0.79055 0.79832 0.79510 1.18567 1.20351 1.19036 1.21285 0.89865 0.94672 1.52391 0.91574 1.19095 0.93417 0.80949 0.95695 1.45878 1.06403 1.10032 1.71962 1.21400 0.82710 0.92378 0.76349 1.90719 1.56351 1.47945 1.52531 1.22248 0.76080 0.93916 1.12104 1.46335 1.10086 1.59229 1.07446 1.26499 0.87796 0.79070 0.90861 1.68188 1.04510 1.26374 1.25315 1.24650 1.01556 0.93669 0.91796 1.84429 0.92639 1.70208 0.88447 1.25297 0.90140 1.28289 0.97774 1.42576 1.01050 0.97211 1.00869 1.94605 1.91751 1.54670 0.97047 1.94559 1.06448 1.53413 1.82200 1.20648 0.88709 0.87159 1.02268 1.20277 0.93951 1.22323 0.93156 1.16617 0.86954 0.76748 0.83939 1.90957 1.70608 1.50276 1.29990 0.91898 0.97832 0.96257 0.74698 0.77986 0.84011 0.70666 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.19 13.96 21.45 0.30 -52.89 16 2 C 0.03 1.50 5.47 84.65 0.46 1.96 16 3 Si 0.93 42.23 27.47 68.60 1.88 44.11 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.11 6.54 99.48 0.65 -11.46 16 7 C -0.54 -27.69 9.83 25.60 0.25 -27.44 16 8 H 0.07 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 10.24 4.50 85.63 0.38 10.63 16 10 N -0.69 -22.13 5.55 -466.80 -2.59 -24.72 16 11 C 0.49 13.67 7.90 87.66 0.69 14.36 16 12 O -0.59 -22.68 16.43 -3.00 -0.05 -22.73 16 13 C 0.08 1.13 5.84 85.63 0.50 1.63 16 14 N -0.51 -8.87 2.08 -657.14 -1.37 -10.23 16 15 C 0.44 4.82 11.48 180.17 2.07 6.89 16 16 N -0.52 -7.88 10.42 -193.77 -2.02 -9.90 16 17 C 0.12 2.24 7.70 84.43 0.65 2.89 16 18 S 0.38 5.97 22.98 -56.49 -1.30 4.67 16 19 C -0.22 -4.55 7.39 80.99 0.60 -3.95 16 20 N 0.06 1.57 4.46 -49.12 -0.22 1.35 16 21 O -0.17 -4.50 18.85 18.88 0.36 -4.14 16 22 O -0.15 -3.58 19.03 18.89 0.36 -3.22 16 23 C 0.05 1.03 9.89 23.06 0.23 1.26 16 24 C -0.28 -6.41 6.08 -20.16 -0.12 -6.53 16 25 C 0.56 14.29 7.50 85.43 0.64 14.93 16 26 O -0.54 -17.63 16.68 -4.97 -0.08 -17.71 16 27 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 28 H 0.00 0.18 7.20 -2.39 -0.02 0.17 16 29 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.42 10.62 8.32 -92.71 -0.77 9.85 16 31 H 0.20 0.04 8.01 -2.39 -0.02 0.02 16 32 H 0.14 1.98 7.43 -2.39 -0.02 1.96 16 33 H 0.28 -0.40 8.02 -2.91 -0.02 -0.43 16 34 H 0.17 3.89 7.95 -2.91 -0.02 3.86 16 Total: -1.00 -80.88 332.88 2.01 -78.86 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 0.38 Total: -0.08 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 6.36 Total: 16.64 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -5.89 Total: -96.40 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: 0.58 Total: -47.80 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.30 Total: 4.67 kcal Total: -80.88 2.01 -78.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842572592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.056 kcal (2) G-P(sol) polarization free energy of solvation -80.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds