Wall clock time and date at job start Tue Mar 31 2020 20:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99952 * 2 1 4 4 O 1.20820 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00056 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46933 * 179.97438 * 5 3 2 7 7 C 1.36962 * 120.00531 * 264.58012 * 6 5 3 8 8 H 1.07993 * 119.99893 * 132.78799 * 7 6 5 9 9 C 1.38976 * 119.99509 * 312.79167 * 7 6 5 10 10 N 1.31416 * 120.00030 * 3.35198 * 9 7 6 11 11 Si 1.86803 * 119.99543 * 183.35667 * 9 7 6 12 12 H 1.48500 * 109.46954 * 59.99783 * 11 9 7 13 13 H 1.48497 * 109.46618 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46888 * 299.99583 * 11 9 7 15 15 C 1.34781 * 119.99856 * 84.58247 * 6 5 3 16 16 O 1.21693 * 119.99636 * 4.69848 * 15 6 5 17 17 C 1.46988 * 120.00247 * 184.69084 * 15 6 5 18 18 N 1.33593 * 122.68707 * 354.81941 * 17 15 6 19 19 C 1.28900 * 115.93324 * 179.97438 * 18 17 15 20 20 Cl 1.73605 * 125.12003 * 179.97438 * 19 18 17 21 21 S 1.75935 * 109.75591 * 359.73712 * 19 18 17 22 22 C 1.36302 * 122.69194 * 174.78558 * 17 15 6 23 23 Cl 1.73599 * 125.51527 * 0.03178 * 22 17 15 24 24 H 1.09002 * 109.47065 * 60.00458 * 1 2 3 25 25 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47183 * 300.00274 * 1 2 3 27 27 H 1.09004 * 109.47147 * 59.99536 * 5 3 2 28 28 H 1.09001 * 109.47027 * 299.99824 * 5 3 2 29 29 H 0.97004 * 119.99488 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2827 3.3045 -1.1821 8 1 3.8735 4.2807 -1.3962 9 6 5.1149 2.6822 -2.1049 10 7 5.5597 1.4673 -1.8740 11 14 5.6013 3.5726 -3.6733 12 1 6.3209 4.8250 -3.3287 13 1 6.4873 2.6990 -4.4840 14 1 4.3818 3.9012 -4.4544 15 6 4.0674 3.3575 1.1608 16 8 3.8833 2.7809 2.2165 17 6 4.3834 4.7930 1.1527 18 7 4.6943 5.4570 0.0359 19 6 4.9480 6.7127 0.1789 20 17 5.3768 7.7977 -1.1068 21 16 4.7878 7.1628 1.8721 22 6 4.3822 5.5535 2.2838 23 17 4.0202 4.9822 3.8827 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 6.1403 1.0328 -2.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847510173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:48 Heat of formation + Delta-G solvation = -54.265696 kcal Electronic energy + Delta-G solvation = -22759.539206 eV Core-core repulsion = 18863.399003 eV Total energy + Delta-G solvation = -3896.140204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.06296 -39.48089 -37.77667 -36.82077 -36.46188 -35.72711 -34.81092 -31.62127 -29.89613 -28.78235 -26.71339 -25.28917 -24.44028 -21.91424 -20.34624 -19.38365 -18.79270 -17.37351 -16.94188 -16.09137 -15.92092 -15.67577 -15.17933 -14.99725 -14.52015 -14.38105 -14.26979 -13.47494 -13.13736 -12.76889 -12.66218 -12.28857 -12.21384 -11.70678 -11.49791 -11.35275 -11.20503 -11.18319 -11.05692 -10.85585 -10.71120 -10.41466 -10.22693 -9.77490 -9.48558 -9.27510 -9.11494 -8.69283 -8.45316 -7.60650 -6.42997 -4.20323 0.46310 0.55889 1.43676 1.82693 2.38645 2.49179 3.08173 3.19017 3.21870 3.23962 3.35309 4.05856 4.26426 4.43442 4.85899 5.07141 5.38927 5.46251 5.52632 5.64372 5.93059 6.09095 6.39429 6.86651 7.03661 7.52521 7.57788 7.70994 8.37635 8.58443 8.97885 9.19910 9.64897 10.59999 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.006434 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.528192 B = 4350.566921 C = 6422.789665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.446 3.554 4 O -0.509 6.509 5 C 0.118 3.882 6 N -0.403 5.403 7 C -0.305 4.305 8 H 0.112 0.888 9 C 0.044 3.956 10 N -0.880 5.880 11 Si 0.923 3.077 12 H -0.264 1.264 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.545 3.455 16 O -0.572 6.572 17 C 0.078 3.922 18 N -0.357 5.357 19 C 0.073 3.927 20 Cl 0.029 6.971 21 S 0.201 5.799 22 C -0.169 4.169 23 Cl 0.036 6.964 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 7.186 3.535 8.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.288 3.712 4 O -0.396 6.396 5 C -0.007 4.007 6 N -0.120 5.120 7 C -0.434 4.434 8 H 0.130 0.870 9 C -0.160 4.160 10 N -0.519 5.519 11 Si 0.749 3.251 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.332 3.668 16 O -0.456 6.456 17 C -0.059 4.059 18 N -0.072 5.072 19 C -0.232 4.232 20 Cl 0.056 6.944 21 S 0.450 5.550 22 C -0.319 4.319 23 Cl 0.064 6.936 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.178 0.822 28 H 0.118 0.882 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.643 7.751 3.971 8.862 hybrid contribution -0.166 -0.398 -0.970 1.062 sum -1.809 7.353 3.001 8.145 Atomic orbital electron populations 1.23085 0.78180 1.02589 1.01933 1.86550 1.22128 1.34772 1.84918 1.25356 0.93620 0.80835 0.71357 1.90577 1.67127 1.36459 1.45393 1.21370 0.83917 0.87250 1.08175 1.42906 1.54852 1.08557 1.05643 1.19933 1.26523 1.03199 0.93708 0.87047 1.25562 0.94692 0.95715 1.00077 1.69521 1.32905 1.12433 1.37003 0.86033 0.78915 0.79717 0.80468 1.18871 1.20962 1.19729 1.17139 0.81363 0.83784 0.84514 1.90737 1.55881 1.68167 1.30801 1.20652 1.03059 0.97454 0.84688 1.67739 1.09592 1.02589 1.27323 1.28360 1.08605 0.93748 0.92458 1.98413 1.90830 1.58011 1.47124 1.83695 1.64147 1.04382 1.02792 1.26347 1.12906 0.98573 0.94116 1.98379 1.92287 1.87887 1.15031 0.92509 0.88913 0.92595 0.82155 0.88176 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 15 2 O -0.37 -7.15 10.57 -39.26 -0.41 -7.57 15 3 C 0.45 10.23 7.99 36.01 0.29 10.52 15 4 O -0.51 -12.87 16.06 -18.75 -0.30 -13.17 15 5 C 0.12 2.80 5.49 -5.19 -0.03 2.78 15 6 N -0.40 -10.31 2.05 -117.46 -0.24 -10.55 15 7 C -0.30 -7.85 7.61 -14.99 -0.11 -7.96 15 8 H 0.11 2.91 6.00 -52.49 -0.31 2.59 15 9 C 0.04 1.09 5.35 -17.46 -0.09 1.00 15 10 N -0.88 -22.34 10.93 55.50 0.61 -21.73 15 11 Si 0.92 19.94 29.55 -169.99 -5.02 14.92 15 12 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 15 C 0.55 13.72 7.41 -12.71 -0.09 13.62 15 16 O -0.57 -14.72 14.55 5.20 0.08 -14.65 15 17 C 0.08 1.72 6.54 -84.25 -0.55 1.17 15 18 N -0.36 -7.58 7.02 -8.02 -0.06 -7.64 15 19 C 0.07 1.26 8.26 51.53 0.43 1.69 15 20 Cl 0.03 0.42 29.33 -51.86 -1.52 -1.10 15 21 S 0.20 2.87 23.18 -107.50 -2.49 0.38 15 22 C -0.17 -3.14 6.97 30.04 0.21 -2.93 15 23 Cl 0.04 0.62 27.23 -51.86 -1.41 -0.79 15 24 H 0.06 0.85 8.13 -51.93 -0.42 0.42 15 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 15 27 H 0.16 3.92 5.44 -51.93 -0.28 3.64 15 28 H 0.10 2.32 7.53 -51.93 -0.39 1.93 15 29 H 0.27 6.60 8.31 -40.82 -0.34 6.27 15 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -29.79 309.65 -6.40 -36.18 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -1.39 Total: -0.44 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 1.11 Total: 21.50 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.31 Total: -39.92 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.64 Total: -35.39 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.49 Total: 0.38 kcal Atomic # 17 Polarization: 1.04 SS G_CDS: -2.93 Total: -1.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.79 -6.40 -36.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847510173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.083 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds