Wall clock time and date at job start Tue Mar 31 2020 20:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 116.99952 * 2 1 4 4 O 1.20820 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00056 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.46933 * 179.97438 * 5 3 2 7 7 C 1.36962 * 120.00531 * 264.58012 * 6 5 3 8 8 H 1.07993 * 119.99893 * 132.78799 * 7 6 5 9 9 C 1.38976 * 119.99509 * 312.79167 * 7 6 5 10 10 N 1.31416 * 120.00030 * 3.35198 * 9 7 6 11 11 Si 1.86803 * 119.99543 * 183.35667 * 9 7 6 12 12 H 1.48500 * 109.46954 * 59.99783 * 11 9 7 13 13 H 1.48497 * 109.46618 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46888 * 299.99583 * 11 9 7 15 15 C 1.34781 * 119.99856 * 84.58247 * 6 5 3 16 16 O 1.21693 * 119.99636 * 4.69848 * 15 6 5 17 17 C 1.46988 * 120.00247 * 184.69084 * 15 6 5 18 18 N 1.33593 * 122.68707 * 354.81941 * 17 15 6 19 19 C 1.28900 * 115.93324 * 179.97438 * 18 17 15 20 20 Cl 1.73605 * 125.12003 * 179.97438 * 19 18 17 21 21 S 1.75935 * 109.75591 * 359.73712 * 19 18 17 22 22 C 1.36302 * 122.69194 * 174.78558 * 17 15 6 23 23 Cl 1.73599 * 125.51527 * 0.03178 * 22 17 15 24 24 H 1.09002 * 109.47065 * 60.00458 * 1 2 3 25 25 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47183 * 300.00274 * 1 2 3 27 27 H 1.09004 * 109.47147 * 59.99536 * 5 3 2 28 28 H 1.09001 * 109.47027 * 299.99824 * 5 3 2 29 29 H 0.97004 * 119.99488 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.2827 3.3045 -1.1821 8 1 3.8735 4.2807 -1.3962 9 6 5.1149 2.6822 -2.1049 10 7 5.5597 1.4673 -1.8740 11 14 5.6013 3.5726 -3.6733 12 1 6.3209 4.8250 -3.3287 13 1 6.4873 2.6990 -4.4840 14 1 4.3818 3.9012 -4.4544 15 6 4.0674 3.3575 1.1608 16 8 3.8833 2.7809 2.2165 17 6 4.3834 4.7930 1.1527 18 7 4.6943 5.4570 0.0359 19 6 4.9480 6.7127 0.1789 20 17 5.3768 7.7977 -1.1068 21 16 4.7878 7.1628 1.8721 22 6 4.3822 5.5535 2.2838 23 17 4.0202 4.9822 3.8827 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 6.1403 1.0328 -2.5183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847510173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:48 Heat of formation + Delta-G solvation = -72.137561 kcal Electronic energy + Delta-G solvation = -22760.314189 eV Core-core repulsion = 18863.399003 eV Total energy + Delta-G solvation = -3896.915186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 337.973 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75981 -41.10729 -39.45957 -38.12590 -37.83451 -37.45626 -36.67184 -33.51057 -31.43438 -30.44143 -28.14221 -27.03436 -26.05398 -23.51919 -22.03207 -21.06107 -20.36494 -19.04373 -18.70145 -17.71935 -17.45712 -17.30644 -16.89786 -16.58355 -16.21683 -16.05178 -15.75749 -15.12723 -14.80364 -14.38592 -14.23233 -13.74524 -13.65273 -13.38908 -13.01074 -12.98726 -12.84732 -12.63114 -12.53705 -12.49435 -12.26709 -12.08773 -11.77530 -11.56741 -11.12379 -10.91793 -10.57952 -10.41673 -9.88385 -9.45403 -8.29440 -6.12772 -0.95653 -0.74115 0.04802 0.49700 0.82478 1.10569 1.26925 1.46794 1.49410 1.55985 1.72909 2.30378 2.48583 2.74729 3.11209 3.46465 3.79901 4.08071 4.28594 4.32234 4.35017 4.58271 4.65105 4.97694 5.34931 5.63722 5.83028 6.16821 6.48103 6.82470 7.09001 7.33430 7.77832 8.73898 Molecular weight = 337.97amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.006434 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.528192 B = 4350.566921 C = 6422.789665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.538 6.538 5 C 0.117 3.883 6 N -0.417 5.417 7 C -0.315 4.315 8 H 0.105 0.895 9 C 0.008 3.992 10 N -0.903 5.903 11 Si 0.974 3.026 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.270 1.270 15 C 0.533 3.467 16 O -0.593 6.593 17 C 0.040 3.960 18 N -0.397 5.397 19 C 0.056 3.944 20 Cl 0.050 6.950 21 S 0.334 5.666 22 C -0.181 4.181 23 Cl 0.040 6.960 24 H 0.057 0.943 25 H 0.139 0.861 26 H 0.055 0.945 27 H 0.154 0.846 28 H 0.098 0.902 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 8.871 3.571 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.295 3.705 4 O -0.427 6.427 5 C -0.008 4.008 6 N -0.134 5.134 7 C -0.443 4.443 8 H 0.123 0.877 9 C -0.194 4.194 10 N -0.542 5.542 11 Si 0.798 3.202 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.195 1.195 15 C 0.321 3.679 16 O -0.479 6.479 17 C -0.097 4.097 18 N -0.113 5.113 19 C -0.248 4.248 20 Cl 0.078 6.922 21 S 0.585 5.415 22 C -0.332 4.332 23 Cl 0.069 6.931 24 H 0.076 0.924 25 H 0.157 0.843 26 H 0.074 0.926 27 H 0.170 0.830 28 H 0.116 0.884 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.664 9.438 4.005 10.387 hybrid contribution -0.217 -0.830 -0.851 1.209 sum -1.881 8.608 3.154 9.359 Atomic orbital electron populations 1.23517 0.75269 1.05681 1.02001 1.86513 1.24855 1.32679 1.84108 1.25075 0.93343 0.81319 0.70746 1.90550 1.67645 1.37573 1.46932 1.21270 0.84915 0.87075 1.07554 1.43087 1.55436 1.08963 1.05962 1.19976 1.27089 1.03227 0.94038 0.87741 1.26218 0.94492 0.96253 1.02412 1.69605 1.33441 1.13250 1.37924 0.85259 0.78647 0.78919 0.77420 1.18368 1.20336 1.19509 1.17650 0.80731 0.85385 0.84121 1.90683 1.56776 1.69219 1.31173 1.20280 1.06433 0.96591 0.86384 1.67587 1.11306 1.04509 1.27923 1.28616 1.07755 0.93458 0.94987 1.98420 1.90521 1.56573 1.46705 1.83240 1.60550 0.99273 0.98480 1.26810 1.11464 1.01203 0.93736 1.98380 1.92163 1.88374 1.14214 0.92427 0.84303 0.92618 0.82965 0.88448 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 15 2 O -0.37 -14.19 10.57 -51.41 -0.54 -14.73 15 3 C 0.45 21.19 7.99 71.24 0.57 21.76 15 4 O -0.54 -27.82 16.06 21.98 0.35 -27.46 15 5 C 0.12 5.77 5.49 85.63 0.47 6.24 15 6 N -0.42 -22.07 2.05 -643.75 -1.32 -23.39 15 7 C -0.31 -16.59 7.61 84.07 0.64 -15.95 15 8 H 0.11 5.58 6.00 -2.91 -0.02 5.57 15 9 C 0.01 0.39 5.35 84.93 0.45 0.84 15 10 N -0.90 -46.75 10.93 21.67 0.24 -46.52 15 11 Si 0.97 40.81 29.55 68.60 2.03 42.84 15 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 13 H -0.28 -11.26 7.11 99.48 0.71 -10.56 15 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 15 C 0.53 27.56 7.41 86.54 0.64 28.21 15 16 O -0.59 -31.38 14.55 -4.32 -0.06 -31.44 15 17 C 0.04 1.78 6.54 40.72 0.27 2.05 15 18 N -0.40 -16.75 7.02 -179.29 -1.26 -18.01 15 19 C 0.06 1.83 8.26 130.67 1.08 2.91 15 20 Cl 0.05 1.35 29.33 -2.72 -0.08 1.27 15 21 S 0.33 8.55 23.18 -56.49 -1.31 7.24 15 22 C -0.18 -6.51 6.97 67.37 0.47 -6.05 15 23 Cl 0.04 1.37 27.23 -2.72 -0.07 1.30 15 24 H 0.06 1.66 8.13 -2.39 -0.02 1.64 15 25 H 0.14 2.70 8.14 -2.38 -0.02 2.68 15 26 H 0.05 1.61 8.13 -2.39 -0.02 1.60 15 27 H 0.15 7.75 5.44 -2.38 -0.01 7.73 15 28 H 0.10 4.73 7.53 -2.39 -0.02 4.71 15 29 H 0.28 13.48 8.31 -92.71 -0.77 12.71 15 Total: -1.00 -66.07 309.65 5.00 -61.07 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.24 Total: 5.82 kcal Atomic # 6 Polarization: 36.23 SS G_CDS: 5.79 Total: 42.01 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -2.34 Total: -87.92 kcal Atomic # 8 Polarization: -73.38 SS G_CDS: -0.25 Total: -73.63 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 8.55 SS G_CDS: -1.31 Total: 7.24 kcal Atomic # 17 Polarization: 2.72 SS G_CDS: -0.15 Total: 2.56 kcal Total: -66.07 5.00 -61.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847510173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.065 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds