Wall clock time and date at job start Tue Mar 31 2020 20:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47221 * 269.99945 * 3 2 1 5 5 H 1.48496 * 109.47196 * 30.00231 * 3 2 1 6 6 H 1.48504 * 109.47005 * 150.00312 * 3 2 1 7 7 C 1.37874 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00373 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47448 * 180.02562 * 9 7 2 11 11 O 1.42098 * 110.54032 * 68.37671 * 10 9 7 12 12 O 1.42104 * 110.54248 * 291.63158 * 10 9 7 13 13 N 1.65597 * 104.45072 * 180.02562 * 10 9 7 14 14 C 1.34778 * 120.00033 * 65.00198 * 13 10 9 15 15 O 1.21553 * 119.99653 * 0.02562 * 14 13 10 16 16 C 1.47837 * 120.00094 * 179.97438 * 14 13 10 17 17 C 1.39566 * 120.56193 * 0.22628 * 16 14 13 18 18 N 1.31663 * 120.56577 * 180.28211 * 17 16 14 19 19 C 1.31956 * 121.87991 * 359.74117 * 18 17 16 20 20 C 1.38304 * 121.08249 * 0.02562 * 19 18 17 21 21 C 1.38401 * 119.30300 * 359.97438 * 20 19 18 22 22 C 1.50703 * 120.85460 * 179.97438 * 21 20 19 23 23 F 1.39905 * 109.47157 * 0.02562 * 22 21 20 24 24 F 1.39900 * 109.47159 * 240.00598 * 22 21 20 25 25 F 1.39897 * 109.47274 * 120.00289 * 22 21 20 26 26 H 0.97003 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.46502 * 60.00026 * 9 7 2 28 28 H 1.09002 * 109.47258 * 300.00611 * 9 7 2 29 29 H 0.97002 * 119.99698 * 245.00549 * 13 10 9 30 30 H 1.08000 * 119.71273 * 0.02872 * 17 16 14 31 31 H 1.08002 * 119.45715 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.34647 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4298 -3.8779 -0.0005 11 8 3.1265 -3.9382 1.2365 12 8 3.1267 -3.9382 -1.2375 13 7 1.4795 -5.2341 -0.0013 14 6 0.6892 -5.5026 -1.0595 15 8 0.6744 -4.7495 -2.0135 16 6 -0.1588 -6.7136 -1.0604 17 6 -0.1537 -7.5843 0.0303 18 7 -0.9047 -8.6657 0.0273 19 6 -1.6883 -8.9672 -0.9907 20 6 -1.7537 -8.1532 -2.1069 21 6 -0.9837 -7.0040 -2.1533 22 6 -1.0274 -6.0923 -3.3525 23 9 -1.9190 -6.6088 -4.2988 24 9 0.2499 -6.0011 -3.9158 25 9 -1.4541 -4.8204 -2.9560 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 1.4916 -5.8351 0.7600 30 1 0.4748 -7.3713 0.8824 31 1 -2.2883 -9.8643 -0.9516 32 1 -2.3994 -8.4111 -2.9333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847707262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:52 Heat of formation + Delta-G solvation = -242.348886 kcal Electronic energy + Delta-G solvation = -27879.679852 eV Core-core repulsion = 23131.083788 eV Total energy + Delta-G solvation = -4748.596064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -51.20290 -48.75146 -48.62400 -42.15686 -40.54918 -38.16565 -37.12415 -36.00113 -35.45019 -34.62399 -32.73705 -31.13172 -28.13341 -26.19547 -25.61915 -24.04003 -23.01599 -21.06953 -20.21191 -19.60099 -19.50535 -19.33390 -19.02210 -18.43801 -17.62929 -17.30845 -16.81986 -16.68831 -16.58981 -16.27432 -16.12621 -15.57962 -15.46758 -15.22155 -15.06609 -14.96249 -14.77948 -14.70663 -14.51929 -14.16298 -13.73642 -13.63574 -13.50802 -13.35702 -13.25662 -13.15294 -12.76441 -12.57665 -12.20554 -11.97020 -11.80712 -11.55068 -11.14886 -10.88832 -10.80767 -10.57307 -8.44226 -6.63813 -0.98863 -0.83486 -0.37685 1.14707 1.35096 1.38046 1.39252 1.49219 1.51019 2.28155 2.36153 2.50608 2.63816 2.76651 2.85541 2.90214 3.22049 3.26686 3.27824 3.44569 3.56293 3.78262 4.01185 4.22535 4.39504 4.61204 4.64636 4.72305 5.20882 5.26899 5.49173 5.66778 6.15726 6.46030 6.49855 7.08312 8.68678 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.004196 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.406308 B = 6671.076579 C = 7511.896379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.420 4.420 10 S 2.598 3.402 11 O -0.970 6.970 12 O -0.978 6.978 13 N -1.034 6.034 14 C 0.571 3.429 15 O -0.506 6.506 16 C -0.168 4.168 17 C 0.157 3.843 18 N -0.472 5.472 19 C 0.154 3.846 20 C -0.119 4.119 21 C -0.094 4.094 22 C 0.504 3.496 23 F -0.168 7.168 24 F -0.176 7.176 25 F -0.178 7.178 26 H 0.275 0.725 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.446 0.554 30 H 0.200 0.800 31 H 0.225 0.775 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -21.130 -0.977 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.608 4.608 8 H 0.088 0.912 9 C -0.555 4.555 10 S 2.698 3.302 11 O -0.960 6.960 12 O -0.969 6.969 13 N -0.799 5.799 14 C 0.358 3.642 15 O -0.379 6.379 16 C -0.175 4.175 17 C -0.001 4.001 18 N -0.179 5.179 19 C -0.003 4.003 20 C -0.139 4.139 21 C -0.104 4.104 22 C 0.449 3.551 23 F -0.149 7.149 24 F -0.157 7.157 25 F -0.159 7.159 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.287 0.713 30 H 0.217 0.783 31 H 0.242 0.758 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.926 -21.073 -0.973 22.203 hybrid contribution -0.224 1.850 -0.764 2.014 sum -7.150 -19.223 -1.736 20.583 Atomic orbital electron populations 1.70043 1.07668 1.28987 1.47704 1.25869 0.95968 1.03248 0.92658 0.85415 0.79098 0.77405 0.79204 1.19321 1.19082 1.18084 1.20723 0.93167 0.90292 1.56581 0.91236 1.27654 1.10654 1.10562 1.06593 1.05579 0.76072 0.75366 0.73135 1.93515 1.71019 1.86148 1.45352 1.93507 1.71412 1.85670 1.46274 1.54844 1.55092 1.43006 1.26950 1.18430 0.78625 0.85907 0.81221 1.91083 1.64094 1.49257 1.33468 1.20546 1.00877 0.97640 0.98475 1.23510 0.94044 0.87258 0.95241 1.67944 1.05498 1.16288 1.28216 1.24010 0.91949 0.98680 0.85696 1.22538 0.97645 0.91181 1.02511 1.20686 0.99407 0.97408 0.92919 1.18242 0.74101 0.79486 0.83237 1.93175 1.68392 1.86408 1.66965 1.93246 1.39870 1.96236 1.86376 1.93262 1.89722 1.42241 1.90661 0.91646 0.90334 0.89309 0.71318 0.78328 0.75845 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 13.29 21.45 0.28 -52.71 16 2 C 0.03 1.47 5.46 84.65 0.46 1.94 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.57 -32.49 9.13 25.60 0.23 -32.26 16 8 H 0.07 3.86 7.71 -2.91 -0.02 3.84 16 9 C -0.42 -21.39 5.64 71.24 0.40 -20.98 16 10 S 2.60 111.30 5.03 -56.49 -0.28 111.01 16 11 O -0.97 -42.34 18.08 -127.65 -2.31 -44.65 16 12 O -0.98 -48.82 17.03 -120.71 -2.06 -50.88 16 13 N -1.03 -31.48 5.56 -175.61 -0.98 -32.46 16 14 C 0.57 18.89 7.36 86.78 0.64 19.53 16 15 O -0.51 -21.52 9.66 12.52 0.12 -21.40 16 16 C -0.17 -4.00 5.87 -19.99 -0.12 -4.11 16 17 C 0.16 2.54 10.71 85.04 0.91 3.45 16 18 N -0.47 -6.47 10.35 -194.76 -2.01 -8.49 16 19 C 0.15 1.31 11.17 84.69 0.95 2.26 16 20 C -0.12 -1.42 9.49 22.32 0.21 -1.21 16 21 C -0.09 -2.10 5.43 -19.40 -0.11 -2.20 16 22 C 0.50 14.58 2.78 71.24 0.20 14.77 16 23 F -0.17 -3.90 16.08 44.97 0.72 -3.18 16 24 F -0.18 -6.11 15.11 44.97 0.68 -5.43 16 25 F -0.18 -6.39 15.17 44.97 0.68 -5.71 16 26 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.08 4.31 7.19 -2.39 -0.02 4.29 16 28 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 29 H 0.45 8.66 6.86 -96.75 -0.66 7.99 16 30 H 0.20 1.96 6.42 -2.91 -0.02 1.94 16 31 H 0.23 -0.24 8.06 -2.91 -0.02 -0.27 16 32 H 0.19 1.11 7.26 -2.91 -0.02 1.08 16 Total: -1.00 -83.19 309.21 1.22 -81.96 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.56 Total: 5.33 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.78 Total: -18.83 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -2.71 Total: -93.65 kcal Atomic # 8 Polarization: -112.68 SS G_CDS: -4.24 Total: -116.93 kcal Atomic # 9 Polarization: -16.40 SS G_CDS: 2.08 Total: -14.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 111.30 SS G_CDS: -0.28 Total: 111.01 kcal Total: -83.19 1.22 -81.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847707262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.385 kcal (2) G-P(sol) polarization free energy of solvation -83.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds