Wall clock time and date at job start Tue Mar 31 2020 20:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46656 * 239.99466 * 3 2 1 5 5 H 1.48489 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46840 * 119.99931 * 3 2 1 7 7 C 1.37877 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46781 * 179.97438 * 9 7 2 11 11 C 1.33795 * 124.17896 * 90.02287 * 10 9 7 12 12 O 1.21539 * 123.76779 * 359.96283 * 11 10 9 13 13 N 1.34526 * 112.45361 * 179.97438 * 11 10 9 14 14 C 1.47310 * 106.62221 * 359.97438 * 13 11 10 15 15 H 1.09004 * 110.59608 * 118.68380 * 14 13 11 16 16 C 1.50698 * 110.59960 * 241.47351 * 14 13 11 17 17 C 1.38241 * 120.00513 * 23.27725 * 16 14 13 18 18 C 1.38216 * 120.01156 * 180.27541 * 17 16 14 19 19 C 1.38266 * 120.02221 * 359.97438 * 18 17 16 20 20 C 1.38203 * 120.00453 * 0.02562 * 19 18 17 21 21 C 1.38305 * 120.00714 * 203.54749 * 16 14 13 22 22 Br 1.89102 * 120.00504 * 359.70370 * 21 16 14 23 23 C 1.34773 * 124.17592 * 269.98373 * 10 9 7 24 24 O 1.21235 * 127.15434 * 0.07420 * 23 10 9 25 25 H 0.97001 * 120.00515 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47560 * 59.99725 * 9 7 2 27 27 H 1.09001 * 109.46643 * 299.98984 * 9 7 2 28 28 H 0.97003 * 126.68539 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.99162 * 0.24972 * 17 16 14 30 30 H 1.08001 * 119.99312 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.99866 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.99774 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6911 -4.1843 1.1074 12 8 2.3947 -3.8373 2.2339 13 7 3.5467 -5.1857 0.8340 14 6 3.6281 -5.2816 -0.6337 15 1 4.6468 -5.0960 -0.9742 16 6 3.1512 -6.6315 -1.1041 17 6 2.2959 -7.3765 -0.3138 18 6 1.8630 -8.6171 -0.7426 19 6 2.2846 -9.1134 -1.9623 20 6 3.1396 -8.3693 -2.7530 21 6 3.5735 -7.1277 -2.3240 22 35 4.7429 -6.1088 -3.4058 23 6 2.6947 -4.1883 -1.1145 24 8 2.4432 -3.8927 -2.2630 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 4.0182 -5.7372 1.4779 29 1 1.9663 -6.9892 0.6390 30 1 1.1944 -9.1987 -0.1251 31 1 1.9457 -10.0827 -2.2971 32 1 3.4692 -8.7573 -3.7055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849356529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:33 Heat of formation + Delta-G solvation = -7.098892 kcal Electronic energy + Delta-G solvation = -20992.347794 eV Core-core repulsion = 17579.338283 eV Total energy + Delta-G solvation = -3413.009511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94102 -39.37501 -37.87589 -35.66426 -34.60645 -32.75762 -32.46770 -31.26459 -29.47774 -27.93535 -26.70519 -23.56565 -22.94108 -22.44314 -21.33547 -19.84535 -17.68092 -17.36744 -16.78624 -16.31590 -15.79664 -15.44904 -14.96735 -14.94432 -14.75054 -14.02987 -13.76670 -13.73649 -13.52049 -13.26963 -13.05371 -12.31329 -11.74770 -11.54592 -11.44660 -11.15076 -10.98851 -10.74182 -10.53480 -10.34593 -10.12602 -9.94971 -9.74432 -9.36022 -9.04832 -8.81039 -8.60012 -8.50967 -6.14117 -4.19482 0.78779 0.97091 1.47470 2.17554 2.87163 3.30308 3.32010 3.34623 3.37682 3.56680 3.72709 4.23866 4.39079 4.48817 4.62958 4.67579 4.98075 5.01148 5.21784 5.24324 5.31964 5.60867 5.81894 5.89460 6.04851 6.14634 6.50883 6.55397 6.99668 7.08520 7.19602 7.78426 7.90004 8.01631 8.04445 8.68025 8.83980 9.45403 10.95279 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.004370 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.399366 B = 6406.127646 C = 7334.659122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.250 3.750 10 N -0.555 5.555 11 C 0.700 3.300 12 O -0.536 6.536 13 N -0.734 5.734 14 C 0.123 3.877 15 H 0.132 0.868 16 C -0.065 4.065 17 C -0.094 4.094 18 C -0.104 4.104 19 C -0.110 4.110 20 C -0.091 4.091 21 C -0.071 4.071 22 Br -0.035 7.035 23 C 0.528 3.472 24 O -0.453 6.453 25 H 0.267 0.733 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.434 0.566 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -20.699 -5.264 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.133 3.867 10 N -0.299 5.299 11 C 0.401 3.599 12 O -0.409 6.409 13 N -0.399 5.399 14 C 0.012 3.988 15 H 0.149 0.851 16 C -0.069 4.069 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.151 4.151 22 Br 0.051 6.949 23 C 0.312 3.688 24 O -0.322 6.322 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.277 0.723 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.477 -19.675 -5.709 22.171 hybrid contribution 0.455 0.439 0.501 0.806 sum 8.932 -19.237 -5.208 21.839 Atomic orbital electron populations 1.69909 1.06018 1.27567 1.49397 1.24885 0.94949 0.99329 0.94489 0.86453 0.79512 0.82125 0.78806 1.20005 1.20952 1.19991 1.21206 0.93391 0.90105 1.52693 0.92198 1.19623 0.86499 0.80615 0.99954 1.46822 1.43126 1.33955 1.05985 1.15984 0.79104 0.79630 0.85136 1.90972 1.62889 1.66309 1.20732 1.45561 1.49852 1.38401 1.06115 1.21036 1.02354 0.92833 0.82545 0.85066 1.19449 0.98543 0.94870 0.94018 1.21079 0.95845 0.94314 1.00076 1.21287 0.99043 0.95525 0.96343 1.21228 0.97169 1.00064 0.94413 1.21101 0.97285 0.92515 1.00201 1.21668 1.01514 0.96460 0.95464 1.96778 1.60148 1.71399 1.66581 1.20233 0.80680 0.82075 0.85803 1.90770 1.58884 1.64648 1.17864 0.92336 0.92926 0.92728 0.72294 0.84715 0.85006 0.84938 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -15.36 9.39 -34.44 -0.32 -15.68 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.25 6.64 5.45 -5.19 -0.03 6.61 16 10 N -0.55 -12.33 2.59 -122.02 -0.32 -12.64 16 11 C 0.70 14.11 8.62 -88.02 -0.76 13.35 16 12 O -0.54 -12.62 17.48 5.33 0.09 -12.53 16 13 N -0.73 -10.57 5.01 -60.33 -0.30 -10.87 16 14 C 0.12 1.81 3.35 -69.36 -0.23 1.58 16 15 H 0.13 1.76 6.90 -51.93 -0.36 1.40 16 16 C -0.07 -0.84 5.14 -104.60 -0.54 -1.38 16 17 C -0.09 -1.07 9.35 -39.59 -0.37 -1.44 16 18 C -0.10 -0.94 10.05 -39.58 -0.40 -1.34 16 19 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 20 C -0.09 -0.88 9.79 -39.56 -0.39 -1.27 16 21 C -0.07 -0.85 6.22 -39.52 -0.25 -1.10 16 22 Br -0.04 -0.44 31.89 -68.01 -2.17 -2.60 16 23 C 0.53 10.53 7.63 -10.56 -0.08 10.45 16 24 O -0.45 -10.08 17.76 5.60 0.10 -9.98 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.05 1.46 8.00 -51.93 -0.42 1.05 16 27 H 0.05 1.53 7.86 -51.93 -0.41 1.13 16 28 H 0.43 4.69 8.96 -40.82 -0.37 4.33 16 29 H 0.14 1.54 7.28 -52.49 -0.38 1.16 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -33.36 308.68 -8.83 -42.18 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.74 Total: 0.15 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -3.86 Total: 10.26 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.12 Total: -49.05 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.19 Total: -22.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.17 Total: -2.60 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.36 -8.83 -42.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849356529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.086 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds