Wall clock time and date at job start Tue Mar 31 2020 20:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99725 * 2 1 4 4 H 1.48497 * 109.46656 * 239.99466 * 3 2 1 5 5 H 1.48489 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46840 * 119.99931 * 3 2 1 7 7 C 1.37877 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46781 * 179.97438 * 9 7 2 11 11 C 1.33795 * 124.17896 * 90.02287 * 10 9 7 12 12 O 1.21539 * 123.76779 * 359.96283 * 11 10 9 13 13 N 1.34526 * 112.45361 * 179.97438 * 11 10 9 14 14 C 1.47310 * 106.62221 * 359.97438 * 13 11 10 15 15 H 1.09004 * 110.59608 * 118.68380 * 14 13 11 16 16 C 1.50698 * 110.59960 * 241.47351 * 14 13 11 17 17 C 1.38241 * 120.00513 * 23.27725 * 16 14 13 18 18 C 1.38216 * 120.01156 * 180.27541 * 17 16 14 19 19 C 1.38266 * 120.02221 * 359.97438 * 18 17 16 20 20 C 1.38203 * 120.00453 * 0.02562 * 19 18 17 21 21 C 1.38305 * 120.00714 * 203.54749 * 16 14 13 22 22 Br 1.89102 * 120.00504 * 359.70370 * 21 16 14 23 23 C 1.34773 * 124.17592 * 269.98373 * 10 9 7 24 24 O 1.21235 * 127.15434 * 0.07420 * 23 10 9 25 25 H 0.97001 * 120.00515 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47560 * 59.99725 * 9 7 2 27 27 H 1.09001 * 109.46643 * 299.98984 * 9 7 2 28 28 H 0.97003 * 126.68539 * 179.97438 * 13 11 10 29 29 H 1.08001 * 119.99162 * 0.24972 * 17 16 14 30 30 H 1.08001 * 119.99312 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.99866 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.99774 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6911 -4.1843 1.1074 12 8 2.3947 -3.8373 2.2339 13 7 3.5467 -5.1857 0.8340 14 6 3.6281 -5.2816 -0.6337 15 1 4.6468 -5.0960 -0.9742 16 6 3.1512 -6.6315 -1.1041 17 6 2.2959 -7.3765 -0.3138 18 6 1.8630 -8.6171 -0.7426 19 6 2.2846 -9.1134 -1.9623 20 6 3.1396 -8.3693 -2.7530 21 6 3.5735 -7.1277 -2.3240 22 35 4.7429 -6.1088 -3.4058 23 6 2.6947 -4.1883 -1.1145 24 8 2.4432 -3.8927 -2.2630 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 4.0182 -5.7372 1.4779 29 1 1.9663 -6.9892 0.6390 30 1 1.1944 -9.1987 -0.1251 31 1 1.9457 -10.0827 -2.2971 32 1 3.4692 -8.7573 -3.7055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849356529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:32 Heat of formation + Delta-G solvation = -29.230509 kcal Electronic energy + Delta-G solvation = -20993.307493 eV Core-core repulsion = 17579.338283 eV Total energy + Delta-G solvation = -3413.969209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.47715 -40.31095 -39.52484 -37.21927 -36.38028 -34.59434 -33.52610 -32.27994 -30.35859 -29.90936 -28.00311 -25.56851 -24.22928 -23.40334 -22.49393 -21.47036 -19.14421 -18.99670 -18.24758 -17.89668 -17.08041 -16.79911 -16.67533 -16.15715 -16.11558 -15.74960 -15.21648 -14.84773 -14.69206 -14.45861 -14.23322 -14.06786 -13.70450 -13.17500 -12.69349 -12.57444 -12.44125 -12.21875 -12.01678 -11.94014 -11.82226 -11.40153 -11.24323 -10.73160 -10.71335 -10.48197 -9.95143 -9.71111 -8.33210 -6.48048 -0.06787 0.16983 0.54155 0.65365 1.33621 1.38838 1.40642 1.49535 2.03044 2.10427 2.35958 2.53411 2.99172 3.04520 3.25134 3.67195 3.84407 4.13077 4.23965 4.32367 4.38772 4.55713 4.64202 4.84831 4.94620 5.01614 5.12932 5.27598 5.39239 5.56115 5.77583 5.79065 5.83298 6.22875 6.41796 6.57246 7.11347 7.24563 8.76530 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.004370 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.399366 B = 6406.127646 C = 7334.659122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.266 3.734 10 N -0.570 5.570 11 C 0.700 3.300 12 O -0.576 6.576 13 N -0.699 5.699 14 C 0.143 3.857 15 H 0.150 0.850 16 C -0.088 4.088 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.096 4.096 20 C -0.092 4.092 21 C -0.083 4.083 22 Br -0.048 7.048 23 C 0.520 3.480 24 O -0.482 6.482 25 H 0.272 0.728 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.454 0.546 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.666 -22.611 -5.686 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.073 0.927 9 C 0.147 3.853 10 N -0.314 5.314 11 C 0.402 3.598 12 O -0.452 6.452 13 N -0.365 5.365 14 C 0.033 3.967 15 H 0.167 0.833 16 C -0.091 4.091 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.163 4.163 22 Br 0.038 6.962 23 C 0.306 3.694 24 O -0.352 6.352 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.302 0.698 29 H 0.147 0.853 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.570 -21.660 -6.135 24.462 hybrid contribution 0.069 0.886 0.583 1.063 sum 9.639 -20.774 -5.551 23.565 Atomic orbital electron populations 1.70015 1.07490 1.28810 1.49602 1.25826 0.95908 1.03047 0.93653 0.85397 0.78392 0.77585 0.79094 1.19229 1.19660 1.19338 1.21472 0.93319 0.91421 1.53401 0.92709 1.19035 0.86915 0.81858 0.97530 1.46735 1.43203 1.33642 1.07841 1.16005 0.79556 0.80335 0.83948 1.90940 1.64500 1.67812 1.21938 1.45279 1.47957 1.36568 1.06727 1.20921 1.01656 0.92336 0.81755 0.83270 1.19270 1.00643 0.93912 0.95273 1.21173 0.95853 0.95427 0.99939 1.21648 0.98633 0.94571 0.96922 1.21688 0.95333 1.01013 0.93388 1.21449 0.96996 0.91556 1.01198 1.21793 1.02011 0.97414 0.95098 1.96767 1.60549 1.72007 1.66843 1.21038 0.80784 0.82641 0.84900 1.90737 1.59997 1.65706 1.18784 0.91870 0.95177 0.95272 0.69803 0.85273 0.82210 0.81238 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.56 -33.01 9.39 25.60 0.24 -32.77 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.27 14.85 5.45 85.63 0.47 15.31 16 10 N -0.57 -26.23 2.59 -777.20 -2.01 -28.24 16 11 C 0.70 28.75 8.62 179.44 1.55 30.30 16 12 O -0.58 -27.85 17.48 -3.84 -0.07 -27.92 16 13 N -0.70 -19.62 5.01 -463.21 -2.32 -21.94 16 14 C 0.14 4.12 3.35 43.62 0.15 4.26 16 15 H 0.15 3.84 6.90 -2.38 -0.02 3.82 16 16 C -0.09 -2.13 5.14 -19.85 -0.10 -2.23 16 17 C -0.10 -2.18 9.35 22.27 0.21 -1.98 16 18 C -0.10 -1.46 10.05 22.27 0.22 -1.24 16 19 C -0.10 -1.20 10.05 22.27 0.22 -0.97 16 20 C -0.09 -1.50 9.79 22.29 0.22 -1.28 16 21 C -0.08 -1.85 6.22 22.31 0.14 -1.71 16 22 Br -0.05 -1.13 31.89 -20.37 -0.65 -1.78 16 23 C 0.52 21.13 7.63 87.94 0.67 21.80 16 24 O -0.48 -22.02 17.76 -2.89 -0.05 -22.07 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.03 1.78 8.00 -2.39 -0.02 1.76 16 27 H 0.03 1.75 7.86 -2.39 -0.02 1.73 16 28 H 0.45 9.10 8.96 -92.71 -0.83 8.27 16 29 H 0.13 2.79 7.28 -2.91 -0.02 2.77 16 30 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 31 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -74.98 308.68 2.01 -72.98 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.35 Total: 6.08 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 4.44 Total: 30.90 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.05 Total: -105.41 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.12 Total: -49.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -0.65 Total: -1.78 kcal Total: -74.98 2.01 -72.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849356529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.745 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds