Wall clock time and date at job start Tue Mar 31 2020 20:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35854 * 120.00154 * 2 1 4 4 C 1.41408 * 120.00018 * 12.01197 * 3 2 1 5 5 C 1.38100 * 126.10425 * 186.95884 * 4 3 2 6 6 C 1.40200 * 106.54513 * 179.97438 * 5 4 3 7 7 C 1.35365 * 107.21518 * 0.02562 * 6 5 4 8 8 Br 1.89100 * 125.48720 * 180.02562 * 7 6 5 9 9 O 1.34049 * 109.01766 * 359.73227 * 7 6 5 10 10 C 1.41269 * 119.99942 * 179.97438 * 2 1 3 11 11 O 1.21855 * 119.99738 * 238.10489 * 10 2 1 12 12 N 1.34771 * 119.99890 * 57.83218 * 10 2 1 13 13 C 1.36761 * 120.00110 * 173.18303 * 12 10 2 14 14 H 1.08003 * 119.99506 * 342.88672 * 13 12 10 15 15 C 1.39054 * 119.99977 * 162.88454 * 13 12 10 16 16 N 1.31369 * 120.00153 * 358.84085 * 15 13 12 17 17 Si 1.86801 * 120.00013 * 178.84706 * 15 13 12 18 18 H 1.48492 * 109.47379 * 89.99395 * 17 15 13 19 19 H 1.48494 * 109.47303 * 209.99897 * 17 15 13 20 20 H 1.48509 * 109.46735 * 329.99713 * 17 15 13 21 21 C 1.46507 * 120.00197 * 353.18872 * 12 10 2 22 22 C 1.47196 * 109.46893 * 266.31313 * 21 12 10 23 23 N 4.30822 * 50.65513 * 201.43017 * 2 1 3 24 24 H 1.09002 * 109.47227 * 245.20662 * 1 2 3 25 25 H 1.08995 * 109.47471 * 5.21018 * 1 2 3 26 26 H 1.09004 * 109.47371 * 125.21113 * 1 2 3 27 27 H 1.08002 * 120.00526 * 192.01050 * 3 2 1 28 28 H 1.08003 * 126.72720 * 359.96727 * 5 4 3 29 29 H 1.08008 * 126.39100 * 179.97438 * 6 5 4 30 30 H 0.96998 * 119.99995 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46865 * 26.31096 * 21 12 10 32 32 H 1.09003 * 109.47045 * 146.31303 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.1765 0.0000 4 6 1.5025 2.3878 0.2549 5 6 2.0333 3.6587 0.1541 6 6 1.0055 4.5489 0.4957 7 6 -0.0881 3.8058 0.7859 8 35 -1.7715 4.4886 1.3111 9 8 0.2127 2.5083 0.6348 10 6 2.2133 -1.2234 0.0005 11 8 3.0008 -1.4718 0.8966 12 7 2.0121 -2.1181 -0.9870 13 6 2.7933 -3.2379 -1.0650 14 1 3.7295 -3.2816 -0.5281 15 6 2.3824 -4.3201 -1.8354 16 7 1.2330 -4.2759 -2.4700 17 14 3.4646 -5.8370 -1.9677 18 1 3.1135 -6.7916 -0.8859 19 1 3.2512 -6.4838 -3.2872 20 1 4.8899 -5.4411 -1.8352 21 6 0.9564 -1.8912 -1.9773 22 6 -0.2744 -2.5745 -1.5476 23 7 -1.2244 -3.1014 -1.2173 24 1 -0.3634 -0.4310 0.9330 25 1 -0.3634 1.0233 -0.0933 26 1 -0.3634 -0.5926 -0.8397 27 1 3.2486 1.1868 -0.1946 28 1 3.0425 3.9163 -0.1318 29 1 1.0738 5.6265 0.5231 30 1 0.9466 -5.0307 -3.0077 31 1 0.7660 -0.8217 -2.0666 32 1 1.2730 -2.2858 -2.9428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865078328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:52 Heat of formation + Delta-G solvation = 66.865253 kcal Electronic energy + Delta-G solvation = -20706.056717 eV Core-core repulsion = 17296.254532 eV Total energy + Delta-G solvation = -3409.802184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.66485 -39.46463 -36.02285 -34.98626 -34.22844 -33.39286 -32.19867 -31.69845 -29.32002 -27.59600 -26.44231 -25.28209 -22.67538 -21.93501 -20.59437 -18.73630 -18.08456 -16.78492 -16.47828 -16.34941 -16.06574 -15.06802 -14.97365 -14.44133 -13.70911 -13.58048 -13.38391 -13.19976 -12.92977 -12.64202 -12.43037 -11.94956 -11.88571 -11.50963 -11.50317 -11.27435 -11.25744 -11.14252 -10.75440 -10.56807 -10.50364 -10.42062 -10.27217 -9.63545 -9.38069 -8.82204 -8.24574 -7.66902 -6.59404 -4.16032 0.68373 0.79099 1.98094 2.81696 3.07414 3.15373 3.18594 3.26050 3.58646 3.70799 3.98564 4.10585 4.67991 4.76252 4.81533 5.03320 5.18647 5.23897 5.43724 5.56551 5.59661 5.67793 5.84355 5.93700 6.03938 6.16879 6.28487 6.52067 6.63953 6.67888 6.96623 7.30111 7.72907 8.14603 8.78950 8.84800 9.02182 9.55146 10.40027 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.026266 B = 0.003005 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.761853 B = 9316.857937 C =10059.734487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.093 4.093 4 C 0.068 3.932 5 C -0.202 4.202 6 C -0.147 4.147 7 C -0.052 4.052 8 Br 0.039 6.961 9 O -0.142 6.142 10 C 0.477 3.523 11 O -0.569 6.569 12 N -0.431 5.431 13 C -0.300 4.300 14 H 0.111 0.889 15 C 0.030 3.970 16 N -0.886 5.886 17 Si 0.940 3.060 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.215 3.785 22 C 0.259 3.741 23 N -0.482 5.482 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.277 0.723 31 H 0.082 0.918 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 18.942 0.638 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.112 4.112 4 C 0.017 3.983 5 C -0.222 4.222 6 C -0.168 4.168 7 C -0.180 4.180 8 Br 0.123 6.877 9 O -0.039 6.039 10 C 0.268 3.732 11 O -0.453 6.453 12 N -0.150 5.150 13 C -0.428 4.428 14 H 0.129 0.871 15 C -0.172 4.172 16 N -0.526 5.526 17 Si 0.767 3.233 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.191 1.191 21 C 0.089 3.911 22 C -0.058 4.058 23 N -0.163 5.163 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.172 0.828 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.843 17.874 1.659 18.593 hybrid contribution 1.100 -0.791 -0.407 1.415 sum -3.743 17.083 1.251 17.533 Atomic orbital electron populations 1.21689 0.90724 1.04019 1.03734 1.21358 0.96788 0.94521 0.96052 1.20235 0.99377 0.87054 1.04579 1.20097 0.81029 0.95709 1.01483 1.22173 1.01111 0.90543 1.08347 1.21520 0.91217 1.00785 1.03307 1.24035 0.95487 0.84383 1.14112 1.96810 1.19496 1.81222 1.90197 1.84447 1.27715 1.24854 1.66933 1.16568 0.87216 0.85564 0.83892 1.90770 1.39702 1.79188 1.35666 1.43718 1.28435 1.20164 1.22633 1.19865 1.02859 0.91303 1.28724 0.87093 1.25416 0.96481 0.99310 0.96012 1.69567 1.19681 1.32429 1.30952 0.85679 0.79701 0.80214 0.77749 1.20210 1.20617 1.19104 1.19106 0.80448 0.95530 0.96054 1.28854 0.92974 0.91656 0.92348 1.80878 1.14711 1.11275 1.09421 0.90644 0.89546 0.89673 0.82805 0.82221 0.82554 0.91145 0.90073 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.81 36.00 0.32 -2.13 16 2 C -0.08 -1.52 4.52 -104.33 -0.47 -1.99 16 3 C -0.09 -1.44 9.51 -39.23 -0.37 -1.81 16 4 C 0.07 0.96 6.60 -38.43 -0.25 0.71 16 5 C -0.20 -2.34 10.90 -38.90 -0.42 -2.76 16 6 C -0.15 -1.60 10.81 -39.87 -0.43 -2.03 16 7 C -0.05 -0.65 7.79 29.71 0.23 -0.42 16 8 Br 0.04 0.40 34.08 -68.01 -2.32 -1.92 16 9 O -0.14 -2.06 7.16 4.45 0.03 -2.03 16 10 C 0.48 10.77 6.82 -15.11 -0.10 10.67 16 11 O -0.57 -14.90 16.73 5.05 0.08 -14.82 16 12 N -0.43 -9.91 2.58 -121.30 -0.31 -10.22 16 13 C -0.30 -7.52 9.37 -15.05 -0.14 -7.66 16 14 H 0.11 2.89 7.35 -52.48 -0.39 2.51 16 15 C 0.03 0.73 5.34 -17.45 -0.09 0.63 16 16 N -0.89 -21.42 8.15 55.50 0.45 -20.97 16 17 Si 0.94 19.47 29.55 -169.99 -5.02 14.45 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C 0.22 4.30 4.74 -6.83 -0.03 4.27 16 22 C 0.26 5.74 10.81 -20.78 -0.22 5.52 16 23 N -0.48 -11.48 18.53 42.13 0.78 -10.70 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.09 1.32 4.45 -52.67 -0.23 1.09 16 26 H 0.09 1.45 3.45 -51.93 -0.18 1.27 16 27 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.08 1.32 5.42 -51.93 -0.28 1.04 16 32 H 0.14 2.79 6.42 -51.93 -0.33 2.45 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -29.40 301.85 -6.00 -35.40 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.24 Total: 3.26 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.00 Total: 3.00 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.92 Total: -41.89 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.12 Total: -16.85 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 35 Polarization: 0.40 SS G_CDS: -2.32 Total: -1.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.40 -6.00 -35.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865078328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.263 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds