Wall clock time and date at job start Tue Mar 31 2020 20:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35854 * 120.00154 * 2 1 4 4 C 1.41408 * 120.00018 * 12.01197 * 3 2 1 5 5 C 1.38100 * 126.10425 * 186.95884 * 4 3 2 6 6 C 1.40200 * 106.54513 * 179.97438 * 5 4 3 7 7 C 1.35365 * 107.21518 * 0.02562 * 6 5 4 8 8 Br 1.89100 * 125.48720 * 180.02562 * 7 6 5 9 9 O 1.34049 * 109.01766 * 359.73227 * 7 6 5 10 10 C 1.41269 * 119.99942 * 179.97438 * 2 1 3 11 11 O 1.21855 * 119.99738 * 238.10489 * 10 2 1 12 12 N 1.34771 * 119.99890 * 57.83218 * 10 2 1 13 13 C 1.36761 * 120.00110 * 173.18303 * 12 10 2 14 14 H 1.08003 * 119.99506 * 342.88672 * 13 12 10 15 15 C 1.39054 * 119.99977 * 162.88454 * 13 12 10 16 16 N 1.31369 * 120.00153 * 358.84085 * 15 13 12 17 17 Si 1.86801 * 120.00013 * 178.84706 * 15 13 12 18 18 H 1.48492 * 109.47379 * 89.99395 * 17 15 13 19 19 H 1.48494 * 109.47303 * 209.99897 * 17 15 13 20 20 H 1.48509 * 109.46735 * 329.99713 * 17 15 13 21 21 C 1.46507 * 120.00197 * 353.18872 * 12 10 2 22 22 C 1.47196 * 109.46893 * 266.31313 * 21 12 10 23 23 N 4.30822 * 50.65513 * 201.43017 * 2 1 3 24 24 H 1.09002 * 109.47227 * 245.20662 * 1 2 3 25 25 H 1.08995 * 109.47471 * 5.21018 * 1 2 3 26 26 H 1.09004 * 109.47371 * 125.21113 * 1 2 3 27 27 H 1.08002 * 120.00526 * 192.01050 * 3 2 1 28 28 H 1.08003 * 126.72720 * 359.96727 * 5 4 3 29 29 H 1.08008 * 126.39100 * 179.97438 * 6 5 4 30 30 H 0.96998 * 119.99995 * 179.97438 * 16 15 13 31 31 H 1.08998 * 109.46865 * 26.31096 * 21 12 10 32 32 H 1.09003 * 109.47045 * 146.31303 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.1765 0.0000 4 6 1.5025 2.3878 0.2549 5 6 2.0333 3.6587 0.1541 6 6 1.0055 4.5489 0.4957 7 6 -0.0881 3.8058 0.7859 8 35 -1.7715 4.4886 1.3111 9 8 0.2127 2.5083 0.6348 10 6 2.2133 -1.2234 0.0005 11 8 3.0008 -1.4718 0.8966 12 7 2.0121 -2.1181 -0.9870 13 6 2.7933 -3.2379 -1.0650 14 1 3.7295 -3.2816 -0.5281 15 6 2.3824 -4.3201 -1.8354 16 7 1.2330 -4.2759 -2.4700 17 14 3.4646 -5.8370 -1.9677 18 1 3.1135 -6.7916 -0.8859 19 1 3.2512 -6.4838 -3.2872 20 1 4.8899 -5.4411 -1.8352 21 6 0.9564 -1.8912 -1.9773 22 6 -0.2744 -2.5745 -1.5476 23 7 -1.2244 -3.1014 -1.2173 24 1 -0.3634 -0.4310 0.9330 25 1 -0.3634 1.0233 -0.0933 26 1 -0.3634 -0.5926 -0.8397 27 1 3.2486 1.1868 -0.1946 28 1 3.0425 3.9163 -0.1318 29 1 1.0738 5.6265 0.5231 30 1 0.9466 -5.0307 -3.0077 31 1 0.7660 -0.8217 -2.0666 32 1 1.2730 -2.2858 -2.9428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865078328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:52 Heat of formation + Delta-G solvation = 50.238660 kcal Electronic energy + Delta-G solvation = -20706.777700 eV Core-core repulsion = 17296.254532 eV Total energy + Delta-G solvation = -3410.523168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.67675 -41.13535 -37.79444 -36.47516 -35.95729 -34.37232 -33.77609 -32.85938 -30.52170 -29.21749 -27.83933 -26.82474 -24.10228 -22.91832 -21.75223 -20.18831 -19.86791 -18.11960 -18.05657 -17.52721 -17.43586 -16.70680 -16.20578 -16.11266 -15.25384 -15.19767 -14.87335 -14.28280 -14.06048 -13.90975 -13.69542 -13.65851 -13.45334 -13.13681 -12.99345 -12.93160 -12.53783 -12.42255 -12.33088 -12.14573 -12.08568 -11.63606 -11.35874 -11.19178 -10.69653 -10.55527 -10.07442 -8.79870 -8.41583 -6.06466 -0.48884 -0.12377 0.95727 1.36680 1.44344 1.55519 1.67618 1.96361 2.04797 2.23845 2.25955 2.37133 2.98898 3.14149 3.61333 3.78365 3.85163 3.98190 4.15102 4.42895 4.45087 4.56205 4.57331 4.61737 4.86023 4.99422 5.03693 5.15113 5.36748 5.39269 5.47477 5.90863 5.95130 6.32693 7.00692 7.03747 7.23605 7.77861 8.54672 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.026266 B = 0.003005 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.761853 B = 9316.857937 C =10059.734487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 C -0.041 4.041 4 C 0.022 3.978 5 C -0.165 4.165 6 C -0.144 4.144 7 C -0.058 4.058 8 Br 0.056 6.944 9 O -0.161 6.161 10 C 0.484 3.516 11 O -0.616 6.616 12 N -0.444 5.444 13 C -0.330 4.330 14 H 0.090 0.910 15 C 0.002 3.998 16 N -0.897 5.897 17 Si 0.995 3.005 18 H -0.288 1.288 19 H -0.269 1.269 20 H -0.262 1.262 21 C 0.221 3.779 22 C 0.271 3.729 23 N -0.516 5.516 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.192 0.808 29 H 0.190 0.810 30 H 0.277 0.723 31 H 0.122 0.878 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 21.726 0.074 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C -0.060 4.060 4 C -0.029 4.029 5 C -0.184 4.184 6 C -0.165 4.165 7 C -0.186 4.186 8 Br 0.140 6.860 9 O -0.060 6.060 10 C 0.276 3.724 11 O -0.504 6.504 12 N -0.162 5.162 13 C -0.458 4.458 14 H 0.108 0.892 15 C -0.199 4.199 16 N -0.537 5.537 17 Si 0.819 3.181 18 H -0.215 1.215 19 H -0.193 1.193 20 H -0.186 1.186 21 C 0.095 3.905 22 C -0.045 4.045 23 N -0.198 5.198 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.184 0.816 28 H 0.209 0.791 29 H 0.207 0.793 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.520 20.675 1.069 21.190 hybrid contribution 0.976 -1.316 -0.144 1.645 sum -3.545 19.358 0.925 19.702 Atomic orbital electron populations 1.21494 0.89940 1.04663 1.02330 1.20947 0.97086 0.93316 1.02777 1.20437 0.99721 0.86873 0.98987 1.20043 0.81606 0.96037 1.05236 1.22676 1.02283 0.89265 1.04174 1.21977 0.90130 1.02317 1.02112 1.24632 0.96833 0.83999 1.13108 1.96844 1.18564 1.80640 1.89996 1.84376 1.28115 1.26083 1.67380 1.17174 0.86071 0.86551 0.82591 1.90714 1.41869 1.80495 1.37295 1.43851 1.28855 1.20001 1.23461 1.19812 1.03087 0.93064 1.29819 0.89185 1.26022 0.97491 1.00960 0.95396 1.69659 1.20278 1.32772 1.31006 0.84881 0.78597 0.77054 0.77602 1.21453 1.19344 1.18576 1.19285 0.78744 0.97622 0.94863 1.29301 0.92941 0.90890 0.91414 1.80863 1.15918 1.12527 1.10489 0.92717 0.87900 0.90481 0.81605 0.79120 0.79318 0.91240 0.86079 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 8.81 71.23 0.63 -3.69 16 2 C -0.14 -5.00 4.52 -19.67 -0.09 -5.09 16 3 C -0.04 -1.19 9.51 22.50 0.21 -0.98 16 4 C 0.02 0.55 6.60 23.02 0.15 0.70 16 5 C -0.16 -3.06 10.90 22.71 0.25 -2.81 16 6 C -0.14 -2.49 10.81 22.08 0.24 -2.26 16 7 C -0.06 -1.26 7.79 67.16 0.52 -0.74 16 8 Br 0.06 1.01 34.08 -20.37 -0.69 0.32 16 9 O -0.16 -4.33 7.16 -6.98 -0.05 -4.38 16 10 C 0.48 22.41 6.82 84.99 0.58 22.99 16 11 O -0.62 -33.47 16.73 -4.84 -0.08 -33.55 16 12 N -0.44 -20.90 2.58 -655.84 -1.69 -22.59 16 13 C -0.33 -17.06 9.37 84.12 0.79 -16.27 16 14 H 0.09 4.92 7.35 -2.91 -0.02 4.90 16 15 C 0.00 0.10 5.34 84.96 0.45 0.56 16 16 N -0.90 -43.76 8.15 21.68 0.18 -43.58 16 17 Si 0.99 40.33 29.55 68.60 2.03 42.36 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C 0.22 8.86 4.74 84.57 0.40 9.26 16 22 C 0.27 12.18 10.81 89.45 0.97 13.15 16 23 N -0.52 -25.00 18.53 20.00 0.37 -24.63 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.10 3.06 4.45 -14.05 -0.06 3.00 16 26 H 0.08 2.62 3.45 -2.38 -0.01 2.62 16 27 H 0.17 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.28 13.13 8.31 -92.71 -0.77 12.35 16 31 H 0.12 3.86 5.42 -2.39 -0.01 3.84 16 32 H 0.14 5.50 6.42 -2.39 -0.02 5.48 16 Total: -1.00 -65.42 301.85 6.30 -59.12 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.14 Total: 12.12 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.10 Total: 14.82 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -1.15 Total: -90.80 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.13 Total: -37.93 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 35 Polarization: 1.01 SS G_CDS: -0.69 Total: 0.32 kcal Total: -65.42 6.30 -59.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865078328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.358 kcal (2) G-P(sol) polarization free energy of solvation -65.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds