Wall clock time and date at job start Tue Mar 31 2020 20:15:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 C 1.35854 * 120.00154 * 2 1
4 4 C 1.41408 * 120.00018 * 12.01197 * 3 2 1
5 5 C 1.38100 * 126.10425 * 186.95884 * 4 3 2
6 6 C 1.40200 * 106.54513 * 179.97438 * 5 4 3
7 7 C 1.35365 * 107.21518 * 0.02562 * 6 5 4
8 8 Br 1.89100 * 125.48720 * 180.02562 * 7 6 5
9 9 O 1.34049 * 109.01766 * 359.73227 * 7 6 5
10 10 C 1.41269 * 119.99942 * 179.97438 * 2 1 3
11 11 O 1.21855 * 119.99738 * 238.10489 * 10 2 1
12 12 N 1.34771 * 119.99890 * 57.83218 * 10 2 1
13 13 C 1.36761 * 120.00110 * 173.18303 * 12 10 2
14 14 H 1.08003 * 119.99506 * 342.88672 * 13 12 10
15 15 C 1.39054 * 119.99977 * 162.88454 * 13 12 10
16 16 N 1.31369 * 120.00153 * 358.84085 * 15 13 12
17 17 Si 1.86801 * 120.00013 * 178.84706 * 15 13 12
18 18 H 1.48492 * 109.47379 * 89.99395 * 17 15 13
19 19 H 1.48494 * 109.47303 * 209.99897 * 17 15 13
20 20 H 1.48509 * 109.46735 * 329.99713 * 17 15 13
21 21 C 1.46507 * 120.00197 * 353.18872 * 12 10 2
22 22 C 1.47196 * 109.46893 * 266.31313 * 21 12 10
23 23 N 4.30822 * 50.65513 * 201.43017 * 2 1 3
24 24 H 1.09002 * 109.47227 * 245.20662 * 1 2 3
25 25 H 1.08995 * 109.47471 * 5.21018 * 1 2 3
26 26 H 1.09004 * 109.47371 * 125.21113 * 1 2 3
27 27 H 1.08002 * 120.00526 * 192.01050 * 3 2 1
28 28 H 1.08003 * 126.72720 * 359.96727 * 5 4 3
29 29 H 1.08008 * 126.39100 * 179.97438 * 6 5 4
30 30 H 0.96998 * 119.99995 * 179.97438 * 16 15 13
31 31 H 1.08998 * 109.46865 * 26.31096 * 21 12 10
32 32 H 1.09003 * 109.47045 * 146.31303 * 21 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1863 1.1765 0.0000
4 6 1.5025 2.3878 0.2549
5 6 2.0333 3.6587 0.1541
6 6 1.0055 4.5489 0.4957
7 6 -0.0881 3.8058 0.7859
8 35 -1.7715 4.4886 1.3111
9 8 0.2127 2.5083 0.6348
10 6 2.2133 -1.2234 0.0005
11 8 3.0008 -1.4718 0.8966
12 7 2.0121 -2.1181 -0.9870
13 6 2.7933 -3.2379 -1.0650
14 1 3.7295 -3.2816 -0.5281
15 6 2.3824 -4.3201 -1.8354
16 7 1.2330 -4.2759 -2.4700
17 14 3.4646 -5.8370 -1.9677
18 1 3.1135 -6.7916 -0.8859
19 1 3.2512 -6.4838 -3.2872
20 1 4.8899 -5.4411 -1.8352
21 6 0.9564 -1.8912 -1.9773
22 6 -0.2744 -2.5745 -1.5476
23 7 -1.2244 -3.1014 -1.2173
24 1 -0.3634 -0.4310 0.9330
25 1 -0.3634 1.0233 -0.0933
26 1 -0.3634 -0.5926 -0.8397
27 1 3.2486 1.1868 -0.1946
28 1 3.0425 3.9163 -0.1318
29 1 1.0738 5.6265 0.5231
30 1 0.9466 -5.0307 -3.0077
31 1 0.7660 -0.8217 -2.0666
32 1 1.2730 -2.2858 -2.9428
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000865078328.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:15:52
Heat of formation + Delta-G solvation = 50.238660 kcal
Electronic energy + Delta-G solvation = -20706.777700 eV
Core-core repulsion = 17296.254532 eV
Total energy + Delta-G solvation = -3410.523168 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 338.005 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-43.67675 -41.13535 -37.79444 -36.47516 -35.95729 -34.37232 -33.77609 -32.85938
-30.52170 -29.21749 -27.83933 -26.82474 -24.10228 -22.91832 -21.75223 -20.18831
-19.86791 -18.11960 -18.05657 -17.52721 -17.43586 -16.70680 -16.20578 -16.11266
-15.25384 -15.19767 -14.87335 -14.28280 -14.06048 -13.90975 -13.69542 -13.65851
-13.45334 -13.13681 -12.99345 -12.93160 -12.53783 -12.42255 -12.33088 -12.14573
-12.08568 -11.63606 -11.35874 -11.19178 -10.69653 -10.55527 -10.07442 -8.79870
-8.41583 -6.06466 -0.48884 -0.12377 0.95727 1.36680 1.44344 1.55519
1.67618 1.96361 2.04797 2.23845 2.25955 2.37133 2.98898 3.14149
3.61333 3.78365 3.85163 3.98190 4.15102 4.42895 4.45087 4.56205
4.57331 4.61737 4.86023 4.99422 5.03693 5.15113 5.36748 5.39269
5.47477 5.90863 5.95130 6.32693 7.00692 7.03747 7.23605 7.77861
8.54672
Molecular weight = 338.01amu
Principal moments of inertia in cm(-1)
A = 0.026266 B = 0.003005 C = 0.002783
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.761853 B = 9316.857937 C =10059.734487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.138 4.138
3 C -0.041 4.041
4 C 0.022 3.978
5 C -0.165 4.165
6 C -0.144 4.144
7 C -0.058 4.058
8 Br 0.056 6.944
9 O -0.161 6.161
10 C 0.484 3.516
11 O -0.616 6.616
12 N -0.444 5.444
13 C -0.330 4.330
14 H 0.090 0.910
15 C 0.002 3.998
16 N -0.897 5.897
17 Si 0.995 3.005
18 H -0.288 1.288
19 H -0.269 1.269
20 H -0.262 1.262
21 C 0.221 3.779
22 C 0.271 3.729
23 N -0.516 5.516
24 H 0.054 0.946
25 H 0.103 0.897
26 H 0.077 0.923
27 H 0.167 0.833
28 H 0.192 0.808
29 H 0.190 0.810
30 H 0.277 0.723
31 H 0.122 0.878
32 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.582 21.726 0.074 21.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.141 4.141
3 C -0.060 4.060
4 C -0.029 4.029
5 C -0.184 4.184
6 C -0.165 4.165
7 C -0.186 4.186
8 Br 0.140 6.860
9 O -0.060 6.060
10 C 0.276 3.724
11 O -0.504 6.504
12 N -0.162 5.162
13 C -0.458 4.458
14 H 0.108 0.892
15 C -0.199 4.199
16 N -0.537 5.537
17 Si 0.819 3.181
18 H -0.215 1.215
19 H -0.193 1.193
20 H -0.186 1.186
21 C 0.095 3.905
22 C -0.045 4.045
23 N -0.198 5.198
24 H 0.073 0.927
25 H 0.121 0.879
26 H 0.095 0.905
27 H 0.184 0.816
28 H 0.209 0.791
29 H 0.207 0.793
30 H 0.088 0.912
31 H 0.139 0.861
32 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -4.520 20.675 1.069 21.190
hybrid contribution 0.976 -1.316 -0.144 1.645
sum -3.545 19.358 0.925 19.702
Atomic orbital electron populations
1.21494 0.89940 1.04663 1.02330 1.20947 0.97086 0.93316 1.02777
1.20437 0.99721 0.86873 0.98987 1.20043 0.81606 0.96037 1.05236
1.22676 1.02283 0.89265 1.04174 1.21977 0.90130 1.02317 1.02112
1.24632 0.96833 0.83999 1.13108 1.96844 1.18564 1.80640 1.89996
1.84376 1.28115 1.26083 1.67380 1.17174 0.86071 0.86551 0.82591
1.90714 1.41869 1.80495 1.37295 1.43851 1.28855 1.20001 1.23461
1.19812 1.03087 0.93064 1.29819 0.89185 1.26022 0.97491 1.00960
0.95396 1.69659 1.20278 1.32772 1.31006 0.84881 0.78597 0.77054
0.77602 1.21453 1.19344 1.18576 1.19285 0.78744 0.97622 0.94863
1.29301 0.92941 0.90890 0.91414 1.80863 1.15918 1.12527 1.10489
0.92717 0.87900 0.90481 0.81605 0.79120 0.79318 0.91240 0.86079
0.84701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.31 8.81 71.23 0.63 -3.69 16
2 C -0.14 -5.00 4.52 -19.67 -0.09 -5.09 16
3 C -0.04 -1.19 9.51 22.50 0.21 -0.98 16
4 C 0.02 0.55 6.60 23.02 0.15 0.70 16
5 C -0.16 -3.06 10.90 22.71 0.25 -2.81 16
6 C -0.14 -2.49 10.81 22.08 0.24 -2.26 16
7 C -0.06 -1.26 7.79 67.16 0.52 -0.74 16
8 Br 0.06 1.01 34.08 -20.37 -0.69 0.32 16
9 O -0.16 -4.33 7.16 -6.98 -0.05 -4.38 16
10 C 0.48 22.41 6.82 84.99 0.58 22.99 16
11 O -0.62 -33.47 16.73 -4.84 -0.08 -33.55 16
12 N -0.44 -20.90 2.58 -655.84 -1.69 -22.59 16
13 C -0.33 -17.06 9.37 84.12 0.79 -16.27 16
14 H 0.09 4.92 7.35 -2.91 -0.02 4.90 16
15 C 0.00 0.10 5.34 84.96 0.45 0.56 16
16 N -0.90 -43.76 8.15 21.68 0.18 -43.58 16
17 Si 0.99 40.33 29.55 68.60 2.03 42.36 16
18 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16
19 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16
20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16
21 C 0.22 8.86 4.74 84.57 0.40 9.26 16
22 C 0.27 12.18 10.81 89.45 0.97 13.15 16
23 N -0.52 -25.00 18.53 20.00 0.37 -24.63 16
24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
25 H 0.10 3.06 4.45 -14.05 -0.06 3.00 16
26 H 0.08 2.62 3.45 -2.38 -0.01 2.62 16
27 H 0.17 4.35 8.06 -2.91 -0.02 4.32 16
28 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16
29 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16
30 H 0.28 13.13 8.31 -92.71 -0.77 12.35 16
31 H 0.12 3.86 5.42 -2.39 -0.01 3.84 16
32 H 0.14 5.50 6.42 -2.39 -0.02 5.48 16
Total: -1.00 -65.42 301.85 6.30 -59.12
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: 1.14 Total: 12.12 kcal
Atomic # 6 Polarization: 9.71 SS G_CDS: 5.10 Total: 14.82 kcal
Atomic # 7 Polarization: -89.65 SS G_CDS: -1.15 Total: -90.80 kcal
Atomic # 8 Polarization: -37.80 SS G_CDS: -0.13 Total: -37.93 kcal
Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal
Atomic # 35 Polarization: 1.01 SS G_CDS: -0.69 Total: 0.32 kcal
Total: -65.42 6.30 -59.12 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865078328.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.358 kcal
(2) G-P(sol) polarization free energy of solvation -65.418 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.940 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds