Wall clock time and date at job start Tue Mar 31 2020 20:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35860 * 120.00168 * 2 1 4 4 C 1.41407 * 120.00115 * 186.06008 * 3 2 1 5 5 C 1.38094 * 126.10582 * 174.96221 * 4 3 2 6 6 C 1.40202 * 106.55097 * 180.12967 * 5 4 3 7 7 C 1.35370 * 107.20812 * 359.58160 * 6 5 4 8 8 Br 1.89096 * 125.48825 * 180.24113 * 7 6 5 9 9 O 1.34052 * 109.02125 * 0.26227 * 7 6 5 10 10 C 1.41270 * 119.99539 * 180.02562 * 2 1 3 11 11 O 1.21851 * 120.00139 * 78.31412 * 10 2 1 12 12 N 1.34773 * 119.99837 * 258.30869 * 10 2 1 13 13 C 1.36755 * 120.00149 * 184.92504 * 12 10 2 14 14 H 1.07996 * 119.99897 * 23.11207 * 13 12 10 15 15 C 1.39061 * 119.99933 * 203.11234 * 13 12 10 16 16 N 1.31368 * 119.99979 * 20.50073 * 15 13 12 17 17 Si 1.86797 * 119.99839 * 200.50290 * 15 13 12 18 18 H 1.48504 * 109.47031 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47186 * 119.99629 * 17 15 13 20 20 H 1.48495 * 109.47466 * 240.00221 * 17 15 13 21 21 C 1.46510 * 119.99913 * 4.92861 * 12 10 2 22 22 C 1.47197 * 109.47088 * 84.15007 * 21 12 10 23 23 N 4.04899 * 71.87894 * 117.14943 * 2 1 3 24 24 H 1.08998 * 109.47298 * 84.91736 * 1 2 3 25 25 H 1.08999 * 109.47305 * 204.92156 * 1 2 3 26 26 H 1.09006 * 109.46650 * 324.92311 * 1 2 3 27 27 H 1.07998 * 120.00253 * 6.05766 * 3 2 1 28 28 H 1.08005 * 126.72460 * 359.97438 * 5 4 3 29 29 H 1.07997 * 126.39586 * 179.84238 * 6 5 4 30 30 H 0.96998 * 119.99686 * 179.97438 * 16 15 13 31 31 H 1.08994 * 109.46864 * 204.15003 * 21 12 10 32 32 H 1.09001 * 109.46995 * 324.14625 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.1766 0.0000 4 6 3.5945 1.1800 -0.1293 5 6 4.3986 2.2969 -0.2424 6 6 5.7166 1.8310 -0.3500 7 6 5.6697 0.4795 -0.2902 8 35 7.1640 -0.6758 -0.3799 9 8 4.3932 0.0920 -0.1576 10 6 2.2133 -1.2235 -0.0005 11 8 2.3328 -1.8576 -1.0342 12 7 2.7550 -1.6893 1.1422 13 6 3.5234 -2.8204 1.1233 14 1 4.0060 -3.1302 0.2082 15 6 3.6834 -3.5718 2.2825 16 7 2.8177 -3.4575 3.2640 17 14 5.1293 -4.7433 2.4440 18 1 5.9524 -4.6868 1.2093 19 1 5.9592 -4.3476 3.6100 20 1 4.6261 -6.1265 2.6411 21 6 2.5206 -0.9840 2.4048 22 6 1.2378 -1.4205 2.9798 23 7 0.2477 -1.7560 3.4242 24 1 -0.3634 0.0910 -1.0236 25 1 -0.3634 -0.9320 0.4330 26 1 -0.3633 0.8411 0.5906 27 1 1.6510 2.1093 0.0987 28 1 4.0753 3.3274 -0.2495 29 1 6.6039 2.4374 -0.4560 30 1 2.9291 -3.9819 4.0724 31 1 3.3270 -1.2100 3.1023 32 1 2.4897 0.0899 2.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865078329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:56 Heat of formation + Delta-G solvation = 32.719488 kcal Electronic energy + Delta-G solvation = -21724.015916 eV Core-core repulsion = 18312.733060 eV Total energy + Delta-G solvation = -3411.282856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.49012 -40.91714 -37.60897 -36.27528 -35.91041 -34.14066 -33.59624 -32.82885 -30.70280 -29.21944 -27.47473 -26.65516 -24.01343 -22.68046 -21.76775 -19.97566 -19.67768 -18.60316 -18.01390 -17.23060 -17.10550 -16.51963 -16.08781 -15.84922 -15.27944 -14.72354 -14.45195 -14.29911 -14.03381 -13.83369 -13.75612 -13.59748 -13.48613 -13.36555 -12.94129 -12.92784 -12.72891 -12.38024 -12.36675 -12.21902 -12.10134 -11.51335 -11.26754 -11.13053 -10.63634 -10.38974 -9.89275 -8.67373 -8.43260 -5.97622 -0.29226 0.05900 1.13281 1.31409 1.41751 1.54518 1.73936 1.91082 2.12316 2.24299 2.34023 2.51694 2.99222 3.24000 3.53802 3.74626 3.99627 4.05981 4.38388 4.46450 4.57255 4.63333 4.73290 4.75146 4.77354 4.97986 5.01039 5.24858 5.33300 5.46401 5.64930 6.04548 6.11019 6.39751 7.00348 7.11712 7.32519 7.91235 8.61271 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.007668 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.771041 B = 3650.461663 C = 5546.999450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.143 4.143 3 C -0.062 4.062 4 C -0.003 4.003 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.051 4.051 8 Br 0.036 6.964 9 O -0.159 6.159 10 C 0.488 3.512 11 O -0.625 6.625 12 N -0.431 5.431 13 C -0.318 4.318 14 H 0.074 0.926 15 C 0.007 3.993 16 N -0.890 5.890 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.261 1.261 20 H -0.287 1.287 21 C 0.228 3.772 22 C 0.259 3.741 23 N -0.497 5.497 24 H 0.090 0.910 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.211 0.789 28 H 0.203 0.797 29 H 0.188 0.812 30 H 0.274 0.726 31 H 0.112 0.888 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 16.342 -3.262 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C -0.080 4.080 4 C -0.055 4.055 5 C -0.181 4.181 6 C -0.174 4.174 7 C -0.181 4.181 8 Br 0.121 6.879 9 O -0.056 6.056 10 C 0.280 3.720 11 O -0.512 6.512 12 N -0.149 5.149 13 C -0.446 4.446 14 H 0.092 0.908 15 C -0.195 4.195 16 N -0.528 5.528 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.185 1.185 20 H -0.213 1.213 21 C 0.101 3.899 22 C -0.059 4.059 23 N -0.178 5.178 24 H 0.108 0.892 25 H 0.050 0.950 26 H 0.131 0.869 27 H 0.228 0.772 28 H 0.220 0.780 29 H 0.205 0.795 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.758 14.687 -2.911 16.427 hybrid contribution 0.767 -1.237 -0.001 1.456 sum 7.525 13.450 -2.911 15.685 Atomic orbital electron populations 1.20710 0.87949 1.02931 1.03788 1.21307 0.98649 0.93105 1.01532 1.20876 0.87330 0.99069 1.00771 1.20738 0.92650 0.84737 1.07370 1.22622 0.90584 0.99975 1.04960 1.21960 1.00554 0.90600 1.04250 1.24522 0.84115 0.94717 1.14711 1.96765 1.27056 1.66584 1.97535 1.84451 1.15913 1.35719 1.69472 1.17429 0.81693 0.88356 0.84484 1.90689 1.64281 1.62550 1.33689 1.43540 1.42943 1.23662 1.04750 1.19397 1.24500 1.03196 0.97541 0.90781 1.25855 0.99434 0.98615 0.95600 1.69854 1.33110 1.41976 1.07895 0.85208 0.78881 0.77528 0.78974 1.19202 1.18548 1.21283 1.18750 0.88433 0.95985 0.86693 1.29447 0.93658 0.90611 0.92154 1.80855 1.15384 1.11059 1.10468 0.89150 0.94979 0.86929 0.77213 0.77982 0.79496 0.91620 0.86971 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.79 10.01 71.24 0.71 -2.08 16 2 C -0.14 -4.95 4.17 -19.67 -0.08 -5.03 16 3 C -0.06 -1.60 8.52 22.50 0.19 -1.40 16 4 C 0.00 -0.09 6.58 23.02 0.15 0.06 16 5 C -0.16 -3.41 10.90 22.71 0.25 -3.16 16 6 C -0.15 -3.56 10.81 22.08 0.24 -3.32 16 7 C -0.05 -1.64 7.79 67.16 0.52 -1.12 16 8 Br 0.04 1.12 34.08 -20.37 -0.69 0.42 16 9 O -0.16 -6.10 7.78 -7.03 -0.05 -6.16 16 10 C 0.49 23.25 4.24 84.99 0.36 23.61 16 11 O -0.62 -36.03 16.82 -4.83 -0.08 -36.11 16 12 N -0.43 -20.78 1.93 -655.84 -1.27 -22.05 16 13 C -0.32 -17.15 9.18 84.12 0.77 -16.38 16 14 H 0.07 4.40 7.52 -2.91 -0.02 4.38 16 15 C 0.01 0.38 4.84 84.96 0.41 0.79 16 16 N -0.89 -46.08 9.61 21.68 0.21 -45.87 16 17 Si 0.97 41.71 29.60 68.60 2.03 43.74 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 21 C 0.23 9.31 4.93 84.57 0.42 9.73 16 22 C 0.26 11.50 13.27 89.44 1.19 12.69 16 23 N -0.50 -23.51 18.54 20.00 0.37 -23.14 16 24 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.03 1.13 8.06 -2.39 -0.02 1.11 16 26 H 0.11 2.25 8.11 -2.38 -0.02 2.23 16 27 H 0.21 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.27 13.67 8.31 -92.71 -0.77 12.89 16 31 H 0.11 4.73 6.82 -2.39 -0.02 4.71 16 32 H 0.12 3.89 6.09 -2.39 -0.01 3.87 16 Total: -1.00 -74.43 312.17 6.82 -67.62 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.17 Total: 7.18 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 5.13 Total: 14.38 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -0.69 Total: -91.07 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.14 Total: -42.27 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 35 Polarization: 1.12 SS G_CDS: -0.69 Total: 0.42 kcal Total: -74.43 6.82 -67.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865078329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.335 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds