Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47462 * 2 1 4 4 C 1.46496 * 120.00158 * 278.34443 * 3 2 1 5 5 C 1.50702 * 109.47111 * 276.62218 * 4 3 2 6 6 H 1.08001 * 119.99815 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99984 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99825 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.46985 * 89.99805 * 9 7 5 11 11 H 1.48504 * 109.47249 * 209.99728 * 9 7 5 12 12 H 1.48500 * 109.47304 * 330.00039 * 9 7 5 13 13 S 1.65604 * 119.99766 * 98.34068 * 3 2 1 14 14 O 1.42101 * 106.40263 * 344.75208 * 13 3 2 15 15 O 1.42101 * 106.40096 * 211.83322 * 13 3 2 16 16 C 1.76191 * 107.21738 * 98.29578 * 13 3 2 17 17 C 1.38594 * 120.42127 * 112.67004 * 16 13 3 18 18 C 1.38768 * 118.43026 * 180.02562 * 17 16 13 19 19 Cl 1.73602 * 120.42096 * 179.97438 * 18 17 16 20 20 C 1.38316 * 119.16540 * 359.97438 * 18 17 16 21 21 N 1.31869 * 120.75963 * 0.02562 * 20 18 17 22 22 C 1.31970 * 121.72199 * 359.97438 * 21 20 18 23 23 Cl 1.73596 * 119.62051 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46830 * 299.99464 * 1 2 3 26 26 H 1.08996 * 109.47078 * 59.99930 * 1 2 3 27 27 H 1.09008 * 109.47022 * 239.99892 * 2 1 3 28 28 H 1.09003 * 109.47369 * 120.00897 * 2 1 3 29 29 H 1.09000 * 109.47339 * 36.62509 * 4 3 2 30 30 H 1.09005 * 109.47065 * 156.62847 * 4 3 2 31 31 H 0.96996 * 120.00100 * 180.02562 * 8 7 5 32 32 H 1.08008 * 120.78420 * 0.04235 * 17 16 13 33 33 H 1.08005 * 119.61654 * 179.72790 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0890 2.1331 -1.2552 5 6 3.3713 1.7956 -1.9715 6 1 4.0640 1.0911 -1.5355 7 6 3.6595 2.3855 -3.1840 8 7 4.7782 2.0906 -3.8094 9 14 2.4609 3.6035 -3.9384 10 1 2.7910 4.9750 -3.4741 11 1 2.5613 3.5445 -5.4189 12 1 1.0776 3.2595 -3.5220 13 16 2.4906 2.0924 1.4190 14 8 1.9808 1.2773 2.4655 15 8 2.1895 3.4755 1.2942 16 6 4.2463 1.9711 1.5042 17 6 5.0328 3.1097 1.4278 18 6 6.4113 2.9663 1.4987 19 17 7.4456 4.3576 1.4076 20 6 6.9508 1.7009 1.6430 21 7 6.1716 0.6394 1.7124 22 6 4.8572 0.7381 1.6483 23 17 3.8833 -0.6956 1.7460 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.2401 1.8684 -1.8857 30 1 2.0632 3.2015 -1.0407 31 1 4.9811 2.5058 -4.6621 32 1 4.5836 4.0855 1.3158 33 1 8.0229 1.5805 1.6945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866733577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = -38.164735 kcal Electronic energy + Delta-G solvation = -23669.212213 eV Core-core repulsion = 19909.603294 eV Total energy + Delta-G solvation = -3759.608919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34763 -37.27421 -36.82413 -36.58936 -36.31121 -35.55915 -32.91425 -32.71879 -31.12405 -30.31874 -27.31157 -24.51895 -23.84672 -23.06181 -21.62761 -19.00376 -18.02125 -17.50593 -17.16267 -16.97578 -16.77098 -15.61933 -15.33881 -14.84812 -14.42472 -14.20550 -13.75103 -13.50743 -13.26227 -12.90639 -12.72693 -12.57932 -12.15046 -12.03826 -11.95921 -11.75218 -11.56474 -11.52062 -11.38567 -11.26670 -11.13597 -11.04292 -10.56234 -10.38432 -10.31828 -10.10453 -9.82827 -9.68807 -9.03735 -8.73488 -8.27540 -6.23744 -4.25985 0.27462 0.70183 0.82501 1.45225 1.90511 3.07985 3.20032 3.26804 3.29530 3.36019 3.94933 4.26219 4.27074 4.36556 4.47974 4.79800 4.98481 5.08333 5.28107 5.33611 5.60442 5.63169 5.67783 5.92747 5.96209 6.19085 6.43148 6.52134 6.73537 6.97391 7.20552 7.29538 7.42931 8.30745 8.78379 9.35587 10.88448 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.009323 B = 0.007460 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.680232 B = 3752.236280 C = 5340.141916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.965 5.965 4 C 0.212 3.788 5 C -0.547 4.547 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.261 1.261 13 S 2.690 3.310 14 O -0.952 6.952 15 O -0.952 6.952 16 C -0.690 4.690 17 C 0.054 3.946 18 C -0.107 4.107 19 Cl -0.040 7.040 20 C 0.179 3.821 21 N -0.474 5.474 22 C 0.271 3.729 23 Cl 0.007 6.993 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 -0.895 10.440 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.805 5.805 4 C 0.089 3.911 5 C -0.586 4.586 6 H 0.096 0.904 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.186 1.186 13 S 2.774 3.226 14 O -0.942 6.942 15 O -0.943 6.943 16 C -0.775 4.775 17 C 0.027 3.973 18 C -0.137 4.137 19 Cl -0.011 7.011 20 C 0.021 3.979 21 N -0.186 5.186 22 C 0.105 3.895 23 Cl 0.036 6.964 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.189 0.811 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.254 -1.317 10.972 11.054 hybrid contribution 0.130 1.203 -1.132 1.658 sum 0.384 -0.114 9.840 9.848 Atomic orbital electron populations 1.22188 0.96350 1.01828 1.02368 1.21440 0.93941 0.82084 1.03497 1.57126 1.76225 1.23365 1.23781 1.19689 0.98876 0.91558 0.80976 1.21400 1.04011 1.27778 1.05438 0.90388 1.24839 0.95012 0.96109 0.96534 1.69888 1.23576 1.43039 1.16148 0.86990 0.82417 0.82377 0.78952 1.19635 1.20904 1.18553 1.02294 0.72956 0.73924 0.73426 1.93583 1.76977 1.69425 1.54230 1.93553 1.82250 1.31969 1.86487 1.32035 1.31130 0.97287 1.17035 1.21264 0.91332 0.98975 0.85746 1.22023 0.92692 0.90841 1.08128 1.98390 1.66024 1.40032 1.96638 1.22914 1.00436 0.85168 0.89346 1.67285 1.04000 1.32411 1.14859 1.21156 0.90004 0.87171 0.91155 1.98449 1.64681 1.37982 1.95278 0.91827 0.92653 0.91963 0.89501 0.90523 0.93631 0.93871 0.92378 0.81111 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.21 37.16 0.38 -2.00 16 2 C 0.12 1.92 5.48 -4.04 -0.02 1.90 16 3 N -0.97 -18.58 2.78 -115.66 -0.32 -18.90 16 4 C 0.21 4.65 4.51 -5.19 -0.02 4.63 16 5 C -0.55 -13.99 9.92 -34.44 -0.34 -14.33 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 9 Si 0.87 19.95 27.47 -169.99 -4.67 15.28 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 13 S 2.69 50.60 5.11 -107.50 -0.55 50.05 16 14 O -0.95 -17.68 15.11 -57.17 -0.86 -18.54 16 15 O -0.95 -19.30 15.79 -57.17 -0.90 -20.20 16 16 C -0.69 -12.51 5.94 -39.40 -0.23 -12.74 16 17 C 0.05 0.90 9.47 -39.25 -0.37 0.53 16 18 C -0.11 -1.60 6.34 -39.36 -0.25 -1.85 16 19 Cl -0.04 -0.51 28.99 -51.86 -1.50 -2.01 16 20 C 0.18 2.58 10.99 -17.51 -0.19 2.39 16 21 N -0.47 -7.95 10.34 -10.33 -0.11 -8.06 16 22 C 0.27 4.83 7.26 -17.45 -0.13 4.70 16 23 Cl 0.01 0.12 23.24 -51.86 -1.20 -1.09 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.88 7.85 -51.93 -0.41 0.48 16 27 H 0.09 1.45 8.13 -51.92 -0.42 1.03 16 28 H 0.08 1.20 4.19 -51.93 -0.22 0.98 16 29 H 0.05 0.97 6.89 -51.93 -0.36 0.61 16 30 H 0.04 0.96 6.46 -51.93 -0.34 0.63 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.17 2.64 7.44 -52.48 -0.39 2.25 16 33 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -29.83 320.78 -8.78 -38.61 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.99 Total: -0.55 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.28 Total: -14.76 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.35 Total: -51.63 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.77 Total: -38.74 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.55 Total: 50.05 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -2.71 Total: -3.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.83 -8.78 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866733577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.446 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds