Wall clock time and date at job start Tue Mar 31 2020 20:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47462 * 2 1 4 4 C 1.46496 * 120.00158 * 278.34443 * 3 2 1 5 5 C 1.50702 * 109.47111 * 276.62218 * 4 3 2 6 6 H 1.08001 * 119.99815 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99984 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99825 * 0.02562 * 7 5 4 10 10 H 1.48509 * 109.46985 * 89.99805 * 9 7 5 11 11 H 1.48504 * 109.47249 * 209.99728 * 9 7 5 12 12 H 1.48500 * 109.47304 * 330.00039 * 9 7 5 13 13 S 1.65604 * 119.99766 * 98.34068 * 3 2 1 14 14 O 1.42101 * 106.40263 * 344.75208 * 13 3 2 15 15 O 1.42101 * 106.40096 * 211.83322 * 13 3 2 16 16 C 1.76191 * 107.21738 * 98.29578 * 13 3 2 17 17 C 1.38594 * 120.42127 * 112.67004 * 16 13 3 18 18 C 1.38768 * 118.43026 * 180.02562 * 17 16 13 19 19 Cl 1.73602 * 120.42096 * 179.97438 * 18 17 16 20 20 C 1.38316 * 119.16540 * 359.97438 * 18 17 16 21 21 N 1.31869 * 120.75963 * 0.02562 * 20 18 17 22 22 C 1.31970 * 121.72199 * 359.97438 * 21 20 18 23 23 Cl 1.73596 * 119.62051 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46830 * 299.99464 * 1 2 3 26 26 H 1.08996 * 109.47078 * 59.99930 * 1 2 3 27 27 H 1.09008 * 109.47022 * 239.99892 * 2 1 3 28 28 H 1.09003 * 109.47369 * 120.00897 * 2 1 3 29 29 H 1.09000 * 109.47339 * 36.62509 * 4 3 2 30 30 H 1.09005 * 109.47065 * 156.62847 * 4 3 2 31 31 H 0.96996 * 120.00100 * 180.02562 * 8 7 5 32 32 H 1.08008 * 120.78420 * 0.04235 * 17 16 13 33 33 H 1.08005 * 119.61654 * 179.72790 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0890 2.1331 -1.2552 5 6 3.3713 1.7956 -1.9715 6 1 4.0640 1.0911 -1.5355 7 6 3.6595 2.3855 -3.1840 8 7 4.7782 2.0906 -3.8094 9 14 2.4609 3.6035 -3.9384 10 1 2.7910 4.9750 -3.4741 11 1 2.5613 3.5445 -5.4189 12 1 1.0776 3.2595 -3.5220 13 16 2.4906 2.0924 1.4190 14 8 1.9808 1.2773 2.4655 15 8 2.1895 3.4755 1.2942 16 6 4.2463 1.9711 1.5042 17 6 5.0328 3.1097 1.4278 18 6 6.4113 2.9663 1.4987 19 17 7.4456 4.3576 1.4076 20 6 6.9508 1.7009 1.6430 21 7 6.1716 0.6394 1.7124 22 6 4.8572 0.7381 1.6483 23 17 3.8833 -0.6956 1.7460 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 1.2401 1.8684 -1.8857 30 1 2.0632 3.2015 -1.0407 31 1 4.9811 2.5058 -4.6621 32 1 4.5836 4.0855 1.3158 33 1 8.0229 1.5805 1.6945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866733577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:55 Heat of formation + Delta-G solvation = -58.214485 kcal Electronic energy + Delta-G solvation = -23670.081635 eV Core-core repulsion = 19909.603294 eV Total energy + Delta-G solvation = -3760.478342 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60517 -38.67326 -38.16415 -37.87836 -37.74609 -37.07175 -34.67723 -34.18070 -32.38591 -31.80532 -29.01630 -25.79985 -25.13818 -24.65079 -23.18426 -20.41420 -19.42599 -19.02511 -18.86369 -18.37389 -18.22079 -17.16277 -16.58602 -16.24224 -16.08979 -15.74875 -15.06447 -14.82479 -14.60050 -14.44722 -14.27725 -13.85802 -13.74609 -13.56221 -13.39047 -13.23528 -13.01631 -12.87120 -12.76787 -12.60111 -12.51545 -12.45436 -12.21352 -11.97837 -11.71035 -11.66952 -11.42308 -11.10792 -10.76117 -10.26956 -9.85294 -8.27674 -6.33148 -1.03052 -0.71501 -0.47810 0.16313 0.71221 1.39385 1.42423 1.49822 1.71367 1.98242 2.35774 2.49384 2.98866 3.06582 3.08224 3.28787 3.52006 3.67128 3.88100 4.01593 4.38940 4.40746 4.44248 4.69098 4.76374 4.91969 5.00342 5.03129 5.37791 5.42067 5.45800 5.70957 6.03845 6.29161 6.71797 7.31484 8.87471 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.009323 B = 0.007460 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.680232 B = 3752.236280 C = 5340.141916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.970 5.970 4 C 0.218 3.782 5 C -0.538 4.538 6 H 0.045 0.955 7 C 0.026 3.974 8 N -0.937 5.937 9 Si 0.920 3.080 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.236 1.236 13 S 2.697 3.303 14 O -0.953 6.953 15 O -0.970 6.970 16 C -0.708 4.708 17 C 0.038 3.962 18 C -0.107 4.107 19 Cl -0.017 7.017 20 C 0.183 3.817 21 N -0.486 5.486 22 C 0.256 3.744 23 Cl 0.011 6.989 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.178 0.822 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -0.464 10.784 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 N -0.809 5.809 4 C 0.093 3.907 5 C -0.577 4.577 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.576 5.576 9 Si 0.743 3.257 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.159 1.159 13 S 2.783 3.217 14 O -0.943 6.943 15 O -0.960 6.960 16 C -0.794 4.794 17 C 0.011 3.989 18 C -0.137 4.137 19 Cl 0.012 6.988 20 C 0.026 3.974 21 N -0.197 5.197 22 C 0.090 3.910 23 Cl 0.040 6.960 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.196 0.804 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.361 -0.899 11.341 11.382 hybrid contribution 0.451 1.035 -1.160 1.619 sum 0.090 0.136 10.181 10.182 Atomic orbital electron populations 1.22191 0.94199 1.03723 1.02390 1.21668 0.95786 0.80773 1.03558 1.57121 1.76704 1.24270 1.22834 1.19491 0.97334 0.91887 0.81944 1.21567 1.04680 1.26214 1.05233 0.93665 1.25614 0.96548 0.98036 0.97199 1.70024 1.25790 1.44970 1.16836 0.86117 0.81553 0.80057 0.77945 1.19304 1.20986 1.15935 1.01927 0.73076 0.73440 0.73224 1.93573 1.77352 1.69293 1.54046 1.93523 1.82846 1.32930 1.86706 1.31905 1.30708 0.98059 1.18755 1.21503 0.92356 0.98985 0.86083 1.22132 0.92424 0.91985 1.07175 1.98399 1.65096 1.38858 1.96444 1.23618 1.01989 0.84418 0.87351 1.67360 1.03656 1.33392 1.15336 1.21324 0.90660 0.87345 0.91647 1.98436 1.64685 1.37618 1.95269 0.89062 0.92574 0.91960 0.90124 0.89856 0.92270 0.93810 0.92458 0.80448 0.76387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 10.21 71.98 0.73 -3.62 16 2 C 0.11 3.43 5.48 86.38 0.47 3.90 16 3 N -0.97 -36.66 2.78 -519.84 -1.44 -38.11 16 4 C 0.22 9.32 4.51 85.63 0.39 9.71 16 5 C -0.54 -27.56 9.92 25.60 0.25 -27.31 16 6 H 0.05 2.57 8.06 -2.91 -0.02 2.55 16 7 C 0.03 1.36 5.47 84.66 0.46 1.83 16 8 N -0.94 -54.35 13.96 21.45 0.30 -54.05 16 9 Si 0.92 40.19 27.47 68.60 1.88 42.07 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 13 S 2.70 100.31 5.11 -56.49 -0.29 100.02 16 14 O -0.95 -34.74 15.11 -128.00 -1.93 -36.67 16 15 O -0.97 -38.80 15.79 -128.00 -2.02 -40.82 16 16 C -0.71 -25.58 5.94 22.38 0.13 -25.45 16 17 C 0.04 1.24 9.47 22.48 0.21 1.46 16 18 C -0.11 -3.09 6.34 22.42 0.14 -2.95 16 19 Cl -0.02 -0.41 28.99 -2.72 -0.08 -0.48 16 20 C 0.18 5.01 10.99 84.71 0.93 5.94 16 21 N -0.49 -15.93 10.34 -186.60 -1.93 -17.86 16 22 C 0.26 9.08 7.26 84.70 0.61 9.69 16 23 Cl 0.01 0.36 23.24 -2.72 -0.06 0.29 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 27 H 0.08 2.66 8.13 -2.38 -0.02 2.64 16 28 H 0.08 2.55 4.19 -2.39 -0.01 2.54 16 29 H 0.06 2.38 6.89 -2.39 -0.02 2.37 16 30 H 0.04 1.89 6.46 -2.38 -0.02 1.88 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.18 5.45 7.44 -2.91 -0.02 5.42 16 33 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -63.36 320.78 -0.12 -63.48 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.11 Total: 8.92 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 4.34 Total: -26.80 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -3.07 Total: -110.01 kcal Atomic # 8 Polarization: -73.53 SS G_CDS: -3.96 Total: -77.49 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.88 Total: 42.07 kcal Atomic # 16 Polarization: 100.31 SS G_CDS: -0.29 Total: 100.02 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.14 Total: -0.19 kcal Total: -63.36 -0.12 -63.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866733577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds