Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47001 * 2 1 4 4 C 1.50705 * 109.46945 * 239.99752 * 2 1 3 5 5 H 1.08000 * 120.00145 * 240.00089 * 4 2 1 6 6 C 1.37879 * 119.99739 * 60.00515 * 4 2 1 7 7 N 1.31519 * 120.00229 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47154 * 89.99754 * 8 6 4 10 10 H 1.48502 * 109.46772 * 209.99585 * 8 6 4 11 11 H 1.48492 * 109.47199 * 329.99805 * 8 6 4 12 12 N 1.46499 * 109.47027 * 119.99987 * 2 1 3 13 13 C 1.46497 * 119.99969 * 59.99740 * 12 2 1 14 14 S 1.65595 * 119.99908 * 239.99928 * 12 2 1 15 15 O 1.42103 * 106.40395 * 336.45602 * 14 12 2 16 16 O 1.42108 * 106.40062 * 203.53872 * 14 12 2 17 17 C 1.76196 * 107.21937 * 90.00219 * 14 12 2 18 18 C 1.38588 * 120.41999 * 115.00142 * 17 14 12 19 19 C 1.38773 * 118.42751 * 180.02562 * 18 17 14 20 20 Cl 1.73605 * 120.41940 * 179.97438 * 19 18 17 21 21 C 1.38315 * 119.16641 * 359.97438 * 19 18 17 22 22 N 1.31872 * 120.75801 * 359.97438 * 21 19 18 23 23 C 1.31968 * 121.72367 * 0.02562 * 22 21 19 24 24 Cl 1.73596 * 119.62183 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46797 * 300.00193 * 1 2 3 27 27 H 1.09003 * 109.46529 * 59.99871 * 1 2 3 28 28 H 0.96997 * 119.99599 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47592 * 269.99867 * 13 12 2 30 30 H 1.09004 * 109.47336 * 29.99903 * 13 12 2 31 31 H 1.08998 * 109.47196 * 149.99738 * 13 12 2 32 32 H 1.07996 * 120.78625 * 0.03882 * 18 17 14 33 33 H 1.07996 * 119.61871 * 179.72352 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1617 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.5795 1.1829 1.5748 16 8 3.7118 -0.8790 2.9815 17 6 1.8961 0.8535 3.4710 18 6 1.9252 0.4458 4.7953 19 6 1.0607 1.0557 5.6934 20 17 1.0532 0.5845 7.3642 21 6 0.2052 2.0437 5.2406 22 7 0.2056 2.4072 3.9729 23 6 1.0136 1.8492 3.0913 24 17 0.9679 2.3694 1.4358 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 0.7083 1.1608 -3.4845 29 1 0.7376 -2.1444 1.9994 30 1 1.5294 -2.5969 0.4708 31 1 2.4628 -2.5819 1.9863 32 1 2.6045 -0.3281 5.1206 33 1 -0.4737 2.5200 5.9323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866734659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = -30.200136 kcal Electronic energy + Delta-G solvation = -23587.573008 eV Core-core repulsion = 19828.309460 eV Total energy + Delta-G solvation = -3759.263548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54178 -37.28783 -36.94222 -36.59219 -36.21288 -35.44850 -33.09738 -32.66506 -31.25569 -29.21637 -25.67195 -25.28918 -24.59682 -23.99375 -20.89638 -18.99120 -18.07762 -17.65826 -17.11780 -16.90484 -16.33970 -15.47890 -15.26727 -15.10534 -14.54048 -13.91247 -13.59613 -13.56315 -13.31041 -13.12497 -12.70142 -12.16136 -12.08150 -11.81094 -11.71290 -11.70246 -11.43549 -11.28562 -11.21652 -10.97309 -10.89499 -10.74668 -10.58000 -10.41208 -10.22099 -10.10518 -9.95278 -9.22870 -9.14299 -8.46404 -8.10892 -6.12666 -4.18981 0.09211 0.53800 0.72545 1.44329 1.77769 2.93436 3.26093 3.33631 3.36488 3.43553 3.96561 4.09260 4.22266 4.30433 4.37593 4.58984 4.88529 5.19122 5.21121 5.36397 5.59220 5.73507 6.01185 6.23102 6.58366 6.73147 6.76661 6.96033 7.13113 7.31592 7.55328 7.72579 7.97962 8.19907 8.82073 9.46235 10.93043 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.004401 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.973204 B = 6361.048848 C = 6927.718129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.260 3.740 3 H 0.070 0.930 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.969 5.969 13 C 0.092 3.908 14 S 2.679 3.321 15 O -0.930 6.930 16 O -0.965 6.965 17 C -0.709 4.709 18 C 0.041 3.959 19 C -0.119 4.119 20 Cl -0.042 7.042 21 C 0.176 3.824 22 N -0.474 5.474 23 C 0.256 3.744 24 Cl 0.051 6.949 25 H 0.033 0.967 26 H 0.015 0.985 27 H 0.095 0.905 28 H 0.264 0.736 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.171 0.829 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -0.129 15.613 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.158 3.842 3 H 0.087 0.913 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.811 5.811 13 C -0.054 4.054 14 S 2.762 3.238 15 O -0.920 6.920 16 O -0.955 6.955 17 C -0.792 4.792 18 C 0.014 3.986 19 C -0.149 4.149 20 Cl -0.013 7.013 21 C 0.018 3.982 22 N -0.186 5.186 23 C 0.091 3.909 24 Cl 0.080 6.920 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.188 0.812 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.231 0.746 15.227 15.408 hybrid contribution -0.052 -0.837 -0.121 0.847 sum -2.282 -0.090 15.106 15.278 Atomic orbital electron populations 1.22309 0.97988 1.00031 1.01054 1.19147 0.91562 0.93482 0.79993 0.91262 1.21316 1.31896 1.13081 0.89760 0.91650 1.24890 0.94876 0.94989 0.98964 1.69845 1.36257 1.22592 1.23949 0.86480 0.79317 0.79296 0.82248 1.20633 1.21097 1.19743 1.57385 1.70232 1.19591 1.33877 1.21426 0.99073 0.81602 1.03281 1.02765 0.74210 0.73949 0.72846 1.93639 1.72575 1.55626 1.70129 1.93512 1.68069 1.58798 1.75093 1.32508 1.20210 1.12599 1.13901 1.21321 0.93220 0.94582 0.89465 1.22081 1.02698 1.02036 0.88069 1.98393 1.97931 1.91255 1.13752 1.23030 0.93479 0.90341 0.91366 1.67508 1.22018 1.27287 1.01787 1.21842 0.88922 0.89070 0.91082 1.98620 1.96354 1.90066 1.06925 0.94750 0.96651 0.88695 0.92572 0.94234 0.89034 0.91449 0.81158 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.16 37.16 0.30 -3.08 16 2 C 0.26 6.04 1.63 -69.08 -0.11 5.93 16 3 H 0.07 1.74 4.44 -51.93 -0.23 1.50 16 4 C -0.52 -13.35 7.99 -34.44 -0.28 -13.63 16 5 H 0.07 1.65 7.33 -52.49 -0.38 1.26 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.97 -19.30 3.06 -115.85 -0.35 -19.65 16 13 C 0.09 1.53 9.65 59.85 0.58 2.11 16 14 S 2.68 50.90 5.19 -107.50 -0.56 50.34 16 15 O -0.93 -20.42 15.24 -57.17 -0.87 -21.29 16 16 O -0.96 -18.18 15.65 -57.17 -0.89 -19.07 16 17 C -0.71 -11.53 5.93 -39.41 -0.23 -11.76 16 18 C 0.04 0.55 9.47 -39.25 -0.37 0.17 16 19 C -0.12 -1.37 6.34 -39.36 -0.25 -1.62 16 20 Cl -0.04 -0.39 28.99 -51.86 -1.50 -1.89 16 21 C 0.18 2.04 10.99 -17.51 -0.19 1.85 16 22 N -0.47 -7.12 10.34 -10.33 -0.11 -7.23 16 23 C 0.26 4.34 7.26 -17.45 -0.13 4.21 16 24 Cl 0.05 0.98 20.30 -51.86 -1.05 -0.07 16 25 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 26 H 0.01 0.29 6.18 -51.93 -0.32 -0.03 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.57 7.02 -51.93 -0.36 1.21 16 31 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 32 H 0.17 1.96 7.44 -52.49 -0.39 1.57 16 33 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -29.24 311.34 -8.57 -37.81 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -2.75 Total: -1.72 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.78 Total: -14.19 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.17 Total: -50.00 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.77 Total: -40.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 50.90 SS G_CDS: -0.56 Total: 50.34 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -2.56 Total: -1.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.24 -8.57 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866734659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds