Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47001 * 2 1 4 4 C 1.50705 * 109.46945 * 239.99752 * 2 1 3 5 5 H 1.08000 * 120.00145 * 240.00089 * 4 2 1 6 6 C 1.37879 * 119.99739 * 60.00515 * 4 2 1 7 7 N 1.31519 * 120.00229 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99705 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47154 * 89.99754 * 8 6 4 10 10 H 1.48502 * 109.46772 * 209.99585 * 8 6 4 11 11 H 1.48492 * 109.47199 * 329.99805 * 8 6 4 12 12 N 1.46499 * 109.47027 * 119.99987 * 2 1 3 13 13 C 1.46497 * 119.99969 * 59.99740 * 12 2 1 14 14 S 1.65595 * 119.99908 * 239.99928 * 12 2 1 15 15 O 1.42103 * 106.40395 * 336.45602 * 14 12 2 16 16 O 1.42108 * 106.40062 * 203.53872 * 14 12 2 17 17 C 1.76196 * 107.21937 * 90.00219 * 14 12 2 18 18 C 1.38588 * 120.41999 * 115.00142 * 17 14 12 19 19 C 1.38773 * 118.42751 * 180.02562 * 18 17 14 20 20 Cl 1.73605 * 120.41940 * 179.97438 * 19 18 17 21 21 C 1.38315 * 119.16641 * 359.97438 * 19 18 17 22 22 N 1.31872 * 120.75801 * 359.97438 * 21 19 18 23 23 C 1.31968 * 121.72367 * 0.02562 * 22 21 19 24 24 Cl 1.73596 * 119.62183 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46797 * 300.00193 * 1 2 3 27 27 H 1.09003 * 109.46529 * 59.99871 * 1 2 3 28 28 H 0.96997 * 119.99599 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47592 * 269.99867 * 13 12 2 30 30 H 1.09004 * 109.47336 * 29.99903 * 13 12 2 31 31 H 1.08998 * 109.47196 * 149.99738 * 13 12 2 32 32 H 1.07996 * 120.78625 * 0.03882 * 18 17 14 33 33 H 1.07996 * 119.61871 * 179.72352 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1617 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.5795 1.1829 1.5748 16 8 3.7118 -0.8790 2.9815 17 6 1.8961 0.8535 3.4710 18 6 1.9252 0.4458 4.7953 19 6 1.0607 1.0557 5.6934 20 17 1.0532 0.5845 7.3642 21 6 0.2052 2.0437 5.2406 22 7 0.2056 2.4072 3.9729 23 6 1.0136 1.8492 3.0913 24 17 0.9679 2.3694 1.4358 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 0.7083 1.1608 -3.4845 29 1 0.7376 -2.1444 1.9994 30 1 1.5294 -2.5969 0.4708 31 1 2.4628 -2.5819 1.9863 32 1 2.6045 -0.3281 5.1206 33 1 -0.4737 2.5200 5.9323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866734659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = -50.078553 kcal Electronic energy + Delta-G solvation = -23588.435001 eV Core-core repulsion = 19828.309460 eV Total energy + Delta-G solvation = -3760.125541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64614 -38.66081 -38.13622 -37.92549 -37.68322 -37.00437 -34.51837 -34.21728 -32.34647 -30.94615 -27.23021 -27.08250 -25.72577 -25.12365 -22.62158 -20.34741 -19.43106 -18.97787 -18.50683 -18.26912 -17.97085 -16.96433 -16.56041 -16.44305 -16.07171 -15.27893 -15.12348 -14.86024 -14.69488 -14.38545 -13.88579 -13.78183 -13.57459 -13.29090 -13.21575 -13.01308 -12.85926 -12.73872 -12.66386 -12.57183 -12.46576 -12.25640 -12.13361 -12.00484 -11.82572 -11.69938 -11.14013 -10.93723 -10.41979 -10.23203 -9.70812 -8.08042 -6.20135 -1.05360 -0.72804 -0.52103 0.30886 0.72818 1.45408 1.48036 1.56671 1.77255 2.04959 2.46518 2.56553 3.00162 3.08096 3.21434 3.26919 3.50700 3.67495 3.99401 4.13820 4.38643 4.75276 4.76059 4.78802 5.02500 5.03553 5.17992 5.26750 5.64336 5.69334 5.89941 6.05003 6.14284 6.32238 6.86284 7.47564 8.96085 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.004401 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.973204 B = 6361.048848 C = 6927.718129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.980 5.980 13 C 0.085 3.915 14 S 2.690 3.310 15 O -0.969 6.969 16 O -0.968 6.968 17 C -0.715 4.715 18 C 0.040 3.960 19 C -0.106 4.106 20 Cl -0.011 7.011 21 C 0.187 3.813 22 N -0.487 5.487 23 C 0.243 3.757 24 Cl 0.017 6.983 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.263 0.737 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.189 0.811 33 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -0.962 18.228 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.821 5.821 13 C -0.059 4.059 14 S 2.778 3.222 15 O -0.959 6.959 16 O -0.958 6.958 17 C -0.802 4.802 18 C 0.014 3.986 19 C -0.136 4.136 20 Cl 0.018 6.982 21 C 0.029 3.971 22 N -0.199 5.199 23 C 0.078 3.922 24 Cl 0.046 6.954 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.206 0.794 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.829 -0.130 17.830 18.054 hybrid contribution 0.109 -0.572 -0.625 0.854 sum -2.720 -0.702 17.205 17.433 Atomic orbital electron populations 1.22092 0.97241 1.00048 1.00547 1.18850 0.92031 0.92638 0.80490 0.93140 1.21665 1.31692 1.13124 0.91142 0.91984 1.25573 0.95231 0.95682 1.01442 1.69969 1.37194 1.23619 1.24260 0.85636 0.78856 0.78382 0.79234 1.19733 1.21250 1.19716 1.57264 1.70285 1.20874 1.33688 1.21624 1.00911 0.79994 1.03416 1.02014 0.74078 0.73304 0.72827 1.93592 1.74010 1.56765 1.71524 1.93497 1.68492 1.58850 1.74933 1.31926 1.20463 1.13354 1.14460 1.21577 0.93725 0.94894 0.88433 1.22129 1.01278 1.00956 0.89256 1.98419 1.97734 1.90915 1.11136 1.23765 0.93245 0.89583 0.90479 1.67508 1.21841 1.27606 1.02933 1.21699 0.90246 0.89994 0.90255 1.98605 1.96593 1.90407 1.09807 0.94251 0.94944 0.91346 0.92725 0.91693 0.90005 0.89934 0.79382 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 8.16 71.98 0.59 -5.63 16 2 C 0.26 12.47 1.63 44.25 0.07 12.54 16 3 H 0.05 2.63 4.44 -2.39 -0.01 2.62 16 4 C -0.54 -28.02 7.99 25.60 0.20 -27.81 16 5 H 0.06 3.18 7.33 -2.91 -0.02 3.16 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -49.98 11.32 21.45 0.24 -49.74 16 8 Si 0.95 42.35 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 N -0.98 -39.01 3.06 -520.44 -1.59 -40.60 16 13 C 0.09 2.76 9.65 127.77 1.23 3.99 16 14 S 2.69 101.88 5.19 -56.49 -0.29 101.59 16 15 O -0.97 -43.78 15.24 -128.00 -1.95 -45.73 16 16 O -0.97 -35.47 15.65 -128.00 -2.00 -37.48 16 17 C -0.71 -22.36 5.93 22.38 0.13 -22.23 16 18 C 0.04 0.97 9.47 22.48 0.21 1.18 16 19 C -0.11 -2.05 6.34 22.42 0.14 -1.91 16 20 Cl -0.01 -0.16 28.99 -2.72 -0.08 -0.24 16 21 C 0.19 3.65 10.99 84.71 0.93 4.58 16 22 N -0.49 -13.64 10.34 -186.60 -1.93 -15.57 16 23 C 0.24 8.06 7.26 84.70 0.61 8.67 16 24 Cl 0.02 0.66 20.30 -2.72 -0.06 0.60 16 25 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 26 H 0.03 1.28 6.18 -2.39 -0.01 1.27 16 27 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 28 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.78 7.02 -2.38 -0.02 2.77 16 31 H 0.08 2.37 7.02 -2.39 -0.02 2.36 16 32 H 0.19 3.75 7.44 -2.91 -0.02 3.72 16 33 H 0.22 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -64.16 311.34 0.12 -64.04 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.17 Total: 3.81 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.58 Total: -25.07 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.28 Total: -105.91 kcal Atomic # 8 Polarization: -79.25 SS G_CDS: -3.95 Total: -83.21 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 101.88 SS G_CDS: -0.29 Total: 101.59 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.13 Total: 0.36 kcal Total: -64.16 0.12 -64.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866734659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.963 kcal (2) G-P(sol) polarization free energy of solvation -64.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds