Wall clock time and date at job start Tue Mar 31 2020 20:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 H 1.08998 * 109.47363 * 306.44096 * 3 2 1 5 5 C 1.50703 * 109.47050 * 186.43835 * 3 2 1 6 6 H 1.08004 * 119.99486 * 240.00650 * 5 3 2 7 7 C 1.37876 * 119.99943 * 59.99892 * 5 3 2 8 8 N 1.31507 * 119.99959 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47083 * 119.99963 * 9 7 5 12 12 H 1.48498 * 109.46837 * 240.00469 * 9 7 5 13 13 N 1.46502 * 109.46931 * 66.44102 * 3 2 1 14 14 S 1.65596 * 119.99948 * 211.98039 * 13 3 2 15 15 O 1.42103 * 106.40426 * 303.76922 * 14 13 3 16 16 O 1.42105 * 106.40279 * 170.84747 * 14 13 3 17 17 C 1.76203 * 107.21707 * 57.30661 * 14 13 3 18 18 C 1.38595 * 120.41571 * 104.98504 * 17 14 13 19 19 C 1.38775 * 118.42346 * 179.97438 * 18 17 14 20 20 Cl 1.73603 * 120.41506 * 179.97438 * 19 18 17 21 21 C 1.38307 * 119.16554 * 359.97438 * 19 18 17 22 22 N 1.31870 * 120.76512 * 359.97438 * 21 19 18 23 23 C 1.31971 * 121.72028 * 0.02562 * 22 21 19 24 24 Cl 1.73595 * 119.62410 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.46904 * 306.32274 * 1 2 3 26 26 H 1.09001 * 109.47247 * 66.31943 * 1 2 3 27 27 H 1.08995 * 109.47448 * 186.32165 * 1 2 3 28 28 H 1.09007 * 109.46940 * 240.00615 * 2 1 3 29 29 H 1.09001 * 109.47172 * 120.00298 * 2 1 3 30 30 H 0.97003 * 120.00138 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00220 * 31.97514 * 13 3 2 32 32 H 1.07996 * 120.79016 * 359.97438 * 18 17 14 33 33 H 1.08004 * 119.61868 * 179.72303 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5856 1.9886 -0.8267 5 6 3.5385 1.4455 -0.1593 6 1 4.1620 1.8836 0.6061 7 6 4.1135 0.8889 -1.2821 8 7 3.3542 0.3559 -2.2141 9 14 5.9711 0.8920 -1.4792 10 1 6.5930 1.5463 -0.2999 11 1 6.4601 -0.5062 -1.5840 12 1 6.3370 1.6380 -2.7100 13 7 1.6822 2.0869 1.2661 14 16 1.3586 3.7105 1.3064 15 8 2.5031 4.3611 0.7715 16 8 0.8431 3.9848 2.6019 17 6 0.0422 4.0082 0.1737 18 6 -1.2405 4.2540 0.6375 19 6 -2.2459 4.4838 -0.2910 20 17 -3.8713 4.7963 0.2328 21 6 -1.9368 4.4606 -1.6389 22 7 -0.7044 4.2243 -2.0443 23 6 0.2765 4.0017 -1.1899 24 17 1.8788 3.6958 -1.7837 25 1 -0.3633 0.6088 0.8281 26 1 -0.3634 0.4127 -0.9411 27 1 -0.3634 -1.0213 0.1131 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.7587 -0.0354 -3.0042 31 1 1.6348 1.5626 2.0808 32 1 -1.4525 4.2664 1.6964 33 1 -2.7145 4.6340 -2.3680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867108584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:10 Heat of formation + Delta-G solvation = -39.480548 kcal Electronic energy + Delta-G solvation = -23753.659128 eV Core-core repulsion = 19993.993150 eV Total energy + Delta-G solvation = -3759.665977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43766 -37.17540 -36.83298 -36.34831 -35.94538 -35.34864 -32.99433 -32.21460 -31.12879 -30.70837 -26.67025 -24.59558 -23.88082 -23.08468 -20.35034 -19.36139 -18.11320 -17.55087 -17.04324 -16.86650 -16.32133 -15.54748 -15.26522 -14.83430 -14.56200 -13.86373 -13.73698 -13.31794 -13.18790 -13.03758 -12.84784 -12.26675 -11.81702 -11.72572 -11.66298 -11.55749 -11.33410 -11.27896 -11.00956 -10.95587 -10.78935 -10.66192 -10.51093 -10.17098 -9.87673 -9.83883 -9.73572 -9.49777 -8.95208 -8.41440 -8.23155 -6.08025 -4.13819 0.20025 0.65381 0.84997 1.58219 1.96965 3.05599 3.27714 3.37033 3.42828 3.57799 4.04634 4.19738 4.32063 4.38464 4.43818 4.69793 5.00650 5.20515 5.40000 5.46774 5.84371 6.02601 6.08504 6.24819 6.41105 6.72454 6.86869 7.05646 7.26338 7.52471 7.59590 7.83828 8.04562 8.22167 8.90470 9.51461 10.95576 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.004991 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.546898 B = 5608.512983 C = 5789.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.251 3.749 4 H 0.062 0.938 5 C -0.514 4.514 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 N -1.093 6.093 14 S 2.690 3.310 15 O -0.925 6.925 16 O -0.979 6.979 17 C -0.708 4.708 18 C 0.043 3.957 19 C -0.122 4.122 20 Cl -0.045 7.045 21 C 0.178 3.822 22 N -0.474 5.474 23 C 0.254 3.746 24 Cl 0.082 6.918 25 H 0.036 0.964 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.408 0.592 32 H 0.169 0.831 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 5.464 2.655 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.148 3.852 4 H 0.079 0.921 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.856 5.856 14 S 2.772 3.228 15 O -0.915 6.915 16 O -0.969 6.969 17 C -0.792 4.792 18 C 0.016 3.984 19 C -0.151 4.151 20 Cl -0.016 7.016 21 C 0.020 3.980 22 N -0.186 5.186 23 C 0.089 3.911 24 Cl 0.112 6.888 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.187 0.813 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.309 6.119 1.851 12.991 hybrid contribution 0.059 -0.538 0.411 0.679 sum -11.249 5.582 2.262 12.760 Atomic orbital electron populations 1.21851 0.99322 0.99568 0.99949 1.21885 0.91693 0.99584 1.03446 1.19400 0.95853 0.91077 0.78886 0.92117 1.21525 0.91104 1.37494 1.05242 0.91490 1.24838 0.97946 0.95134 0.95698 1.69841 1.34581 1.38917 1.09283 0.86596 0.85928 0.77637 0.78362 1.19508 1.21051 1.20975 1.55510 1.84109 1.27203 1.18789 1.02300 0.73751 0.74150 0.72561 1.93675 1.44416 1.73878 1.79491 1.93523 1.81195 1.84878 1.37280 1.32230 1.17480 1.18416 1.11085 1.21280 0.88829 0.86986 1.01271 1.22045 0.88299 1.09123 0.95681 1.98387 1.18497 1.94088 1.90640 1.23036 0.93160 0.89234 0.92612 1.67556 0.99501 1.13590 1.37904 1.21992 0.91852 0.88911 0.88305 1.98634 1.11483 1.89478 1.89253 0.94475 0.94048 0.94343 0.87360 0.94058 0.92772 0.75802 0.81338 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.88 37.16 0.37 -2.28 16 2 C -0.13 -2.63 5.36 -26.73 -0.14 -2.77 16 3 C 0.25 5.47 1.68 -69.08 -0.12 5.36 16 4 H 0.06 1.36 3.32 -51.93 -0.17 1.19 16 5 C -0.51 -12.78 8.26 -34.44 -0.28 -13.06 16 6 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.07 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -22.70 11.29 55.43 0.63 -22.07 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -1.09 -20.49 4.89 -5.88 -0.03 -20.52 16 14 S 2.69 49.59 5.43 -107.50 -0.58 49.01 16 15 O -0.93 -19.75 15.66 -57.17 -0.90 -20.65 16 16 O -0.98 -18.01 17.09 -57.17 -0.98 -18.99 16 17 C -0.71 -11.87 5.75 -39.40 -0.23 -12.10 16 18 C 0.04 0.60 9.46 -39.25 -0.37 0.23 16 19 C -0.12 -1.49 6.34 -39.36 -0.25 -1.74 16 20 Cl -0.04 -0.45 28.99 -51.86 -1.50 -1.95 16 21 C 0.18 2.24 10.98 -17.51 -0.19 2.05 16 22 N -0.47 -7.66 10.34 -10.33 -0.11 -7.77 16 23 C 0.25 4.59 6.66 -17.45 -0.12 4.47 16 24 Cl 0.08 1.70 22.09 -51.86 -1.15 0.55 16 25 H 0.04 0.59 7.64 -51.92 -0.40 0.20 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 2.55 5.93 -51.93 -0.31 2.25 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.41 6.64 8.81 -34.47 -0.30 6.33 16 32 H 0.17 2.02 7.47 -52.49 -0.39 1.62 16 33 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -28.41 318.08 -9.08 -37.49 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -2.81 Total: 2.91 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -1.43 Total: -18.27 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.49 Total: -50.36 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.87 Total: -39.64 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 49.59 SS G_CDS: -0.58 Total: 49.01 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -2.65 Total: -1.40 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.41 -9.08 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867108584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.995 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds