Wall clock time and date at job start Tue Mar 31 2020 20:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 H 1.08998 * 109.47363 * 306.44096 * 3 2 1 5 5 C 1.50703 * 109.47050 * 186.43835 * 3 2 1 6 6 H 1.08004 * 119.99486 * 240.00650 * 5 3 2 7 7 C 1.37876 * 119.99943 * 59.99892 * 5 3 2 8 8 N 1.31507 * 119.99959 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47083 * 119.99963 * 9 7 5 12 12 H 1.48498 * 109.46837 * 240.00469 * 9 7 5 13 13 N 1.46502 * 109.46931 * 66.44102 * 3 2 1 14 14 S 1.65596 * 119.99948 * 211.98039 * 13 3 2 15 15 O 1.42103 * 106.40426 * 303.76922 * 14 13 3 16 16 O 1.42105 * 106.40279 * 170.84747 * 14 13 3 17 17 C 1.76203 * 107.21707 * 57.30661 * 14 13 3 18 18 C 1.38595 * 120.41571 * 104.98504 * 17 14 13 19 19 C 1.38775 * 118.42346 * 179.97438 * 18 17 14 20 20 Cl 1.73603 * 120.41506 * 179.97438 * 19 18 17 21 21 C 1.38307 * 119.16554 * 359.97438 * 19 18 17 22 22 N 1.31870 * 120.76512 * 359.97438 * 21 19 18 23 23 C 1.31971 * 121.72028 * 0.02562 * 22 21 19 24 24 Cl 1.73595 * 119.62410 * 179.97438 * 23 22 21 25 25 H 1.09008 * 109.46904 * 306.32274 * 1 2 3 26 26 H 1.09001 * 109.47247 * 66.31943 * 1 2 3 27 27 H 1.08995 * 109.47448 * 186.32165 * 1 2 3 28 28 H 1.09007 * 109.46940 * 240.00615 * 2 1 3 29 29 H 1.09001 * 109.47172 * 120.00298 * 2 1 3 30 30 H 0.97003 * 120.00138 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00220 * 31.97514 * 13 3 2 32 32 H 1.07996 * 120.79016 * 359.97438 * 18 17 14 33 33 H 1.08004 * 119.61868 * 179.72303 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5856 1.9886 -0.8267 5 6 3.5385 1.4455 -0.1593 6 1 4.1620 1.8836 0.6061 7 6 4.1135 0.8889 -1.2821 8 7 3.3542 0.3559 -2.2141 9 14 5.9711 0.8920 -1.4792 10 1 6.5930 1.5463 -0.2999 11 1 6.4601 -0.5062 -1.5840 12 1 6.3370 1.6380 -2.7100 13 7 1.6822 2.0869 1.2661 14 16 1.3586 3.7105 1.3064 15 8 2.5031 4.3611 0.7715 16 8 0.8431 3.9848 2.6019 17 6 0.0422 4.0082 0.1737 18 6 -1.2405 4.2540 0.6375 19 6 -2.2459 4.4838 -0.2910 20 17 -3.8713 4.7963 0.2328 21 6 -1.9368 4.4606 -1.6389 22 7 -0.7044 4.2243 -2.0443 23 6 0.2765 4.0017 -1.1899 24 17 1.8788 3.6958 -1.7837 25 1 -0.3633 0.6088 0.8281 26 1 -0.3634 0.4127 -0.9411 27 1 -0.3634 -1.0213 0.1131 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.7587 -0.0354 -3.0042 31 1 1.6348 1.5626 2.0808 32 1 -1.4525 4.2664 1.6964 33 1 -2.7145 4.6340 -2.3680 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867108584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:09 Heat of formation + Delta-G solvation = -59.251798 kcal Electronic energy + Delta-G solvation = -23754.516473 eV Core-core repulsion = 19993.993150 eV Total energy + Delta-G solvation = -3760.523323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60448 -38.55565 -37.97804 -37.74234 -37.51748 -36.88265 -34.17377 -34.05745 -32.28408 -32.23697 -28.44827 -25.75065 -25.07773 -24.79421 -21.97379 -20.76013 -19.43551 -18.91858 -18.44612 -18.27377 -17.89817 -17.09251 -16.44326 -16.41093 -15.96036 -15.47364 -14.92621 -14.82585 -14.67885 -14.40355 -14.17533 -13.52037 -13.39520 -13.19408 -13.14681 -13.00374 -12.80371 -12.71269 -12.66065 -12.48900 -12.29552 -12.13383 -11.96748 -11.73544 -11.57384 -11.40722 -11.14477 -10.94513 -10.32788 -10.15089 -9.88812 -7.99753 -6.08342 -0.99214 -0.60219 -0.45730 0.43900 0.78880 1.41062 1.47270 1.55680 1.87174 2.15811 2.50027 2.64439 3.07770 3.14507 3.27623 3.30893 3.60174 3.79635 4.09411 4.42381 4.52277 4.60673 4.74718 4.79977 4.90156 5.17788 5.36011 5.44301 5.78258 5.87613 6.08412 6.11465 6.38665 6.49016 6.96531 7.57460 9.01763 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.004991 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.546898 B = 5608.512983 C = 5789.554194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.251 3.749 4 H 0.062 0.938 5 C -0.521 4.521 6 H 0.049 0.951 7 C 0.035 3.965 8 N -0.900 5.900 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.287 1.287 13 N -1.093 6.093 14 S 2.703 3.297 15 O -0.961 6.961 16 O -0.979 6.979 17 C -0.714 4.714 18 C 0.043 3.957 19 C -0.108 4.108 20 Cl -0.013 7.013 21 C 0.186 3.814 22 N -0.490 5.490 23 C 0.240 3.760 24 Cl 0.040 6.960 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.261 0.739 31 H 0.418 0.582 32 H 0.190 0.810 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 5.796 3.259 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C 0.147 3.853 4 H 0.079 0.921 5 C -0.561 4.561 6 H 0.067 0.933 7 C -0.166 4.166 8 N -0.539 5.539 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.856 5.856 14 S 2.789 3.211 15 O -0.951 6.951 16 O -0.969 6.969 17 C -0.801 4.801 18 C 0.016 3.984 19 C -0.138 4.138 20 Cl 0.016 6.984 21 C 0.028 3.972 22 N -0.202 5.202 23 C 0.075 3.925 24 Cl 0.070 6.930 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.254 0.746 32 H 0.207 0.793 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.038 6.439 2.495 15.644 hybrid contribution 0.682 -0.543 0.258 0.909 sum -13.355 5.896 2.753 14.856 Atomic orbital electron populations 1.21750 0.96753 1.01117 1.00226 1.21739 0.94015 0.98442 1.02180 1.19238 0.94074 0.91955 0.80047 0.92079 1.21703 0.92917 1.36822 1.04650 0.93250 1.25240 1.00030 0.95443 0.95873 1.69918 1.35120 1.39502 1.09387 0.86047 0.83600 0.77607 0.77718 1.20090 1.20458 1.21302 1.55309 1.84502 1.27373 1.18424 1.01596 0.73574 0.73517 0.72452 1.93635 1.46810 1.74518 1.80115 1.93515 1.81202 1.84745 1.37444 1.31799 1.18058 1.20329 1.09938 1.21565 0.87926 0.86250 1.02660 1.22100 0.89397 1.07016 0.95324 1.98412 1.15926 1.93676 1.90373 1.23735 0.92496 0.87151 0.93821 1.67520 1.00450 1.14236 1.38019 1.21820 0.90975 0.90848 0.88850 1.98613 1.14659 1.90129 1.89624 0.92658 0.94914 0.92474 0.90218 0.93724 0.92973 0.74624 0.79310 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.88 71.98 0.71 -4.04 16 2 C -0.12 -5.11 5.36 30.59 0.16 -4.95 16 3 C 0.25 11.01 1.68 44.25 0.07 11.08 16 4 H 0.06 2.77 3.32 -2.39 -0.01 2.76 16 5 C -0.52 -26.43 8.26 25.60 0.21 -26.22 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.03 1.78 5.29 84.66 0.45 2.22 16 8 N -0.90 -46.84 11.29 21.45 0.24 -46.60 16 9 Si 0.92 42.62 29.54 68.60 2.03 44.64 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 N -1.09 -40.60 4.89 -172.51 -0.84 -41.44 16 14 S 2.70 98.57 5.43 -56.49 -0.31 98.27 16 15 O -0.96 -41.90 15.66 -128.00 -2.00 -43.90 16 16 O -0.98 -34.70 17.09 -128.00 -2.19 -36.89 16 17 C -0.71 -23.03 5.75 22.38 0.13 -22.90 16 18 C 0.04 1.06 9.46 22.48 0.21 1.28 16 19 C -0.11 -2.27 6.34 22.41 0.14 -2.12 16 20 Cl -0.01 -0.20 28.99 -2.72 -0.08 -0.28 16 21 C 0.19 4.05 10.98 84.70 0.93 4.98 16 22 N -0.49 -15.05 10.34 -186.61 -1.93 -16.98 16 23 C 0.24 8.51 6.66 84.70 0.56 9.08 16 24 Cl 0.04 1.71 22.09 -2.72 -0.06 1.65 16 25 H 0.05 1.64 7.64 -2.38 -0.02 1.62 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 3.79 5.93 -2.38 -0.01 3.78 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.42 13.29 8.81 -96.75 -0.85 12.44 16 32 H 0.19 3.86 7.47 -2.91 -0.02 3.84 16 33 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -61.73 318.08 -1.23 -62.95 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.33 Total: 10.19 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 3.59 Total: -31.60 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -2.53 Total: -105.03 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -4.19 Total: -80.80 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 98.57 SS G_CDS: -0.31 Total: 98.27 kcal Atomic # 17 Polarization: 1.51 SS G_CDS: -0.14 Total: 1.37 kcal Total: -61.73 -1.23 -62.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867108584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.701 kcal (2) G-P(sol) polarization free energy of solvation -61.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds