Wall clock time and date at job start Tue Mar 31 2020 20:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 H 1.09005 * 109.47075 * 54.75392 * 3 2 1 5 5 C 1.50699 * 109.46927 * 174.75451 * 3 2 1 6 6 H 1.07995 * 119.99728 * 120.00625 * 5 3 2 7 7 C 1.37880 * 120.00074 * 299.99836 * 5 3 2 8 8 N 1.31513 * 119.99977 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47055 * 60.00117 * 9 7 5 11 11 H 1.48497 * 109.46861 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46992 * 299.99843 * 9 7 5 13 13 N 1.46494 * 109.47190 * 294.75815 * 3 2 1 14 14 S 1.65597 * 120.00374 * 145.94765 * 13 3 2 15 15 O 1.42093 * 106.40423 * 313.89381 * 14 13 3 16 16 O 1.42103 * 106.40438 * 180.96801 * 14 13 3 17 17 C 1.76210 * 107.21809 * 67.42922 * 14 13 3 18 18 C 1.38593 * 120.41759 * 106.09155 * 17 14 13 19 19 C 1.38769 * 118.42987 * 180.02562 * 18 17 14 20 20 Cl 1.73598 * 120.42205 * 179.97438 * 19 18 17 21 21 C 1.38314 * 119.15956 * 0.02562 * 19 18 17 22 22 N 1.31864 * 120.76376 * 359.97438 * 21 19 18 23 23 C 1.31974 * 121.72407 * 0.02562 * 22 21 19 24 24 Cl 1.73593 * 119.62212 * 179.97438 * 23 22 21 25 25 H 1.08998 * 109.46642 * 185.00697 * 1 2 3 26 26 H 1.09002 * 109.47122 * 305.00350 * 1 2 3 27 27 H 1.08994 * 109.46791 * 65.00115 * 1 2 3 28 28 H 1.08993 * 109.47400 * 239.99770 * 2 1 3 29 29 H 1.09004 * 109.47010 * 119.99310 * 2 1 3 30 30 H 0.97005 * 120.00008 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99909 * 325.94533 * 13 3 2 32 32 H 1.08010 * 120.78655 * 0.04818 * 18 17 14 33 33 H 1.08005 * 119.61504 * 179.71808 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6020 1.9828 0.8393 5 6 3.5414 1.4445 0.1299 6 1 4.1498 1.8881 -0.6444 7 6 4.1384 0.8802 1.2373 8 7 3.3975 0.3398 2.1800 9 14 5.9994 0.8834 1.3986 10 1 6.4938 2.2836 1.3990 11 1 6.3870 0.2217 2.6703 12 1 6.5966 0.1477 0.2552 13 7 1.6575 2.0957 -1.2542 14 16 1.2834 3.7089 -1.2672 15 8 0.4125 3.9278 -0.1660 16 8 0.9374 4.0298 -2.6076 17 6 2.7667 4.5911 -0.9114 18 6 3.4338 5.2757 -1.9149 19 6 4.5984 5.9562 -1.5888 20 17 5.4758 6.8302 -2.8054 21 6 5.0520 5.9284 -0.2825 22 7 4.3912 5.2663 0.6469 23 6 3.2805 4.6081 0.3730 24 17 2.4549 3.7541 1.6389 25 1 -0.3632 -1.0238 0.0897 26 1 -0.3633 0.5895 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8174 -0.0569 2.9592 31 1 1.6232 1.5833 -2.0771 32 1 3.0560 5.2799 -2.9268 33 1 5.9600 6.4517 -0.0215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867108585.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:13 Heat of formation + Delta-G solvation = -63.058396 kcal Electronic energy + Delta-G solvation = -23878.321456 eV Core-core repulsion = 20117.633067 eV Total energy + Delta-G solvation = -3760.688389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49639 -38.54466 -37.93385 -37.68842 -37.45161 -36.94452 -34.10507 -34.06513 -32.32556 -32.10767 -28.47643 -25.65472 -24.99866 -24.78412 -21.94518 -20.69818 -19.54047 -18.79242 -18.43982 -18.21897 -18.01524 -17.03506 -16.43388 -16.32136 -15.90120 -15.49594 -14.87980 -14.83332 -14.63254 -14.34437 -14.00395 -13.57644 -13.40893 -13.21163 -13.15134 -12.97592 -12.87586 -12.73127 -12.66993 -12.46883 -12.23908 -12.11922 -12.02501 -11.62237 -11.62118 -11.39829 -11.10107 -10.93194 -10.31770 -10.04440 -9.95290 -8.02919 -6.13377 -0.88498 -0.54897 -0.36956 0.52989 0.85391 1.40168 1.45036 1.46672 1.93093 2.15483 2.47716 2.67144 3.13567 3.22611 3.27357 3.35249 3.66110 3.81022 4.12345 4.46089 4.56537 4.65840 4.82306 4.86091 4.96345 5.22488 5.43797 5.50387 5.72759 5.88110 6.09950 6.21736 6.31192 6.49066 6.90686 7.54589 8.99387 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.006958 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.040222 B = 4023.124167 C = 5321.567219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.263 3.737 4 H 0.054 0.946 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.052 3.948 8 N -0.895 5.895 9 Si 0.913 3.087 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.275 1.275 13 N -1.090 6.090 14 S 2.711 3.289 15 O -0.967 6.967 16 O -0.977 6.977 17 C -0.715 4.715 18 C 0.041 3.959 19 C -0.116 4.116 20 Cl -0.018 7.018 21 C 0.181 3.819 22 N -0.501 5.501 23 C 0.272 3.728 24 Cl 0.029 6.971 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.262 0.738 31 H 0.419 0.581 32 H 0.189 0.811 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 8.865 -7.660 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.158 3.842 4 H 0.071 0.929 5 C -0.572 4.572 6 H 0.069 0.931 7 C -0.150 4.150 8 N -0.533 5.533 9 Si 0.740 3.260 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.852 5.852 14 S 2.796 3.204 15 O -0.957 6.957 16 O -0.967 6.967 17 C -0.802 4.802 18 C 0.014 3.986 19 C -0.146 4.146 20 Cl 0.011 6.989 21 C 0.023 3.977 22 N -0.213 5.213 23 C 0.107 3.893 24 Cl 0.058 6.942 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.255 0.745 32 H 0.206 0.794 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.124 9.247 -6.577 11.403 hybrid contribution 1.693 -0.373 -0.497 1.804 sum 2.817 8.874 -7.074 11.693 Atomic orbital electron populations 1.21781 0.96922 1.00725 1.00776 1.21714 0.93920 0.98136 1.02266 1.19002 0.93413 0.91596 0.80166 0.92907 1.21534 0.92272 1.38385 1.04998 0.93090 1.25096 0.99388 0.94921 0.95614 1.69893 1.35534 1.38377 1.09517 0.86306 0.84214 0.78124 0.77322 1.20427 1.21237 1.20086 1.55301 1.85983 1.25371 1.18550 1.01344 0.73289 0.73049 0.72733 1.93594 1.61729 1.85388 1.54980 1.93520 1.82524 1.84295 1.36327 1.31833 1.28230 1.20713 0.99467 1.21530 0.90192 0.87150 0.99752 1.22039 0.97103 1.02558 0.92945 1.98394 1.74136 1.73553 1.52832 1.23614 0.97616 0.90283 0.86167 1.67444 1.07010 1.09737 1.37109 1.21576 0.90092 0.88872 0.88754 1.98540 1.73206 1.70567 1.51842 0.92673 0.94514 0.92833 0.93497 0.90096 0.92838 0.74505 0.79425 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.74 71.98 0.70 -4.46 16 2 C -0.12 -4.98 5.37 30.60 0.16 -4.82 16 3 C 0.26 11.34 1.64 44.25 0.07 11.41 16 4 H 0.05 2.50 4.53 -2.38 -0.01 2.49 16 5 C -0.53 -24.98 6.42 25.60 0.16 -24.82 16 6 H 0.05 2.40 7.81 -2.91 -0.02 2.38 16 7 C 0.05 2.54 5.13 84.66 0.43 2.98 16 8 N -0.89 -45.56 11.29 21.45 0.24 -45.32 16 9 Si 0.91 40.70 29.54 68.60 2.03 42.73 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 N -1.09 -39.58 5.02 -172.52 -0.87 -40.44 16 14 S 2.71 97.43 5.45 -56.49 -0.31 97.12 16 15 O -0.97 -39.49 15.21 -128.00 -1.95 -41.44 16 16 O -0.98 -34.29 17.08 -128.00 -2.19 -36.48 16 17 C -0.72 -24.85 5.96 22.38 0.13 -24.71 16 18 C 0.04 1.14 9.46 22.48 0.21 1.35 16 19 C -0.12 -2.91 6.34 22.41 0.14 -2.77 16 20 Cl -0.02 -0.35 28.99 -2.72 -0.08 -0.42 16 21 C 0.18 4.84 10.98 84.71 0.93 5.77 16 22 N -0.50 -17.73 10.34 -186.61 -1.93 -19.66 16 23 C 0.27 10.49 6.46 84.70 0.55 11.04 16 24 Cl 0.03 1.25 20.97 -2.72 -0.06 1.19 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.71 7.90 -2.39 -0.02 1.69 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 3.82 5.95 -2.38 -0.01 3.80 16 30 H 0.26 13.09 8.31 -92.70 -0.77 12.32 16 31 H 0.42 12.92 8.83 -96.75 -0.85 12.07 16 32 H 0.19 4.35 7.46 -2.91 -0.02 4.32 16 33 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -58.04 315.98 -1.27 -59.31 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.33 Total: 12.44 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.50 Total: -29.03 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -2.55 Total: -105.42 kcal Atomic # 8 Polarization: -73.78 SS G_CDS: -4.13 Total: -77.92 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 97.43 SS G_CDS: -0.31 Total: 97.12 kcal Atomic # 17 Polarization: 0.90 SS G_CDS: -0.14 Total: 0.77 kcal Total: -58.04 -1.27 -59.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867108585.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.746 kcal (2) G-P(sol) polarization free energy of solvation -58.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds