Wall clock time and date at job start Tue Mar 31 2020 20:04:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86800 * 120.00352 * 2 1
4 4 H 1.48499 * 109.47248 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47113 * 300.00300 * 3 2 1
6 6 H 1.48509 * 109.46992 * 59.99845 * 3 2 1
7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99700 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99973 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.47267 * 179.97438 * 9 7 2
11 11 S 1.81398 * 109.47150 * 179.97438 * 10 9 7
12 12 O 1.42097 * 110.53905 * 68.37610 * 11 10 9
13 13 O 1.42103 * 110.54337 * 291.62315 * 11 10 9
14 14 N 1.65603 * 104.44772 * 179.97438 * 11 10 9
15 15 C 1.46503 * 119.99680 * 65.00243 * 14 11 10
16 16 C 1.50704 * 109.46939 * 164.99723 * 15 14 11
17 17 C 1.35416 * 126.76069 * 90.28204 * 16 15 14
18 18 C 1.41482 * 103.98123 * 180.08968 * 17 16 15
19 19 Br 1.89100 * 126.82020 * 179.91097 * 18 17 16
20 20 N 1.30262 * 106.36500 * 359.64895 * 18 17 16
21 21 O 1.20923 * 111.58315 * 0.22478 * 20 18 17
22 22 H 0.97007 * 119.99858 * 0.02562 * 1 2 3
23 23 H 1.08997 * 109.47094 * 60.00011 * 9 7 2
24 24 H 1.09005 * 109.47053 * 299.99967 * 9 7 2
25 25 H 1.09006 * 109.46757 * 59.99471 * 10 9 7
26 26 H 1.08998 * 109.46682 * 299.99934 * 10 9 7
27 27 H 0.97001 * 120.00223 * 244.99837 * 14 11 10
28 28 H 1.08997 * 109.47359 * 45.00152 * 15 14 11
29 29 H 1.08996 * 109.47112 * 284.99705 * 15 14 11
30 30 H 1.08001 * 128.01545 * 0.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2126
7 6 2.0044 -1.1941 -0.0005
8 1 3.0844 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0017
10 6 2.2451 -3.6621 -0.0027
11 16 1.3380 -5.2330 -0.0034
12 8 0.6637 -5.4188 -1.2403
13 8 0.6645 -5.4204 1.2338
14 7 2.5202 -6.3928 -0.0052
15 6 3.4194 -6.5239 1.1440
16 6 4.1393 -7.8458 1.0702
17 6 5.3258 -8.0897 0.4648
18 6 5.5443 -9.4702 0.6847
19 35 7.0269 -10.4897 0.1029
20 7 4.5243 -9.8982 1.3725
21 8 3.7342 -9.0104 1.5958
22 1 -0.4850 0.8401 -0.0004
23 1 0.6246 -2.5563 -0.8919
24 1 0.6239 -2.5575 0.8880
25 1 2.8718 -3.6051 0.8873
26 1 2.8717 -3.6036 -0.8927
27 1 2.6173 -6.9852 -0.7671
28 1 2.8399 -6.4768 2.0660
29 1 4.1471 -5.7126 1.1303
30 1 5.9583 -7.3924 -0.0644
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000867322938.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:04:37
Heat of formation + Delta-G solvation = -13.052643 kcal
Electronic energy + Delta-G solvation = -18572.047513 eV
Core-core repulsion = 15158.390685 eV
Total energy + Delta-G solvation = -3413.656828 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 337.977 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-45.54187 -36.79868 -36.15990 -35.54977 -34.74402 -33.96584 -32.06532 -31.24102
-31.18416 -26.60452 -25.68102 -23.92925 -21.82331 -21.61275 -19.24518 -18.29531
-18.18462 -17.38930 -16.61045 -16.18687 -15.63065 -15.19721 -14.71326 -14.67114
-14.58748 -13.94680 -13.46193 -13.09048 -12.57160 -12.44060 -12.33716 -11.84620
-11.83267 -11.71652 -11.63664 -11.14329 -11.03043 -10.95323 -10.49070 -10.46123
-10.28179 -10.03351 -9.96839 -9.67305 -9.15955 -8.55854 -6.17775 -4.23742
0.49887 0.64122 0.90867 1.47071 2.49274 3.01190 3.21933 3.29607
3.32263 3.71744 4.11907 4.29704 4.32735 4.39999 4.55383 4.61404
4.98211 5.15363 5.17830 5.31295 5.34499 5.53965 5.69593 6.38530
6.78892 7.23560 7.29004 7.54455 7.75062 8.10905 8.80002 9.41624
10.93218
Molecular weight = 337.98amu
Principal moments of inertia in cm(-1)
A = 0.023017 B = 0.002393 C = 0.002240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.216078 B =11698.216978 C =12499.656562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.058 3.942
3 Si 0.900 3.100
4 H -0.272 1.272
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.521 4.521
8 H 0.062 0.938
9 C 0.027 3.973
10 C -0.588 4.588
11 S 2.591 3.409
12 O -0.960 6.960
13 O -0.961 6.961
14 N -1.127 6.127
15 C 0.196 3.804
16 C -0.022 4.022
17 C -0.186 4.186
18 C 0.001 3.999
19 Br 0.050 6.950
20 N -0.327 5.327
21 O 0.130 5.870
22 H 0.265 0.735
23 H 0.034 0.966
24 H 0.035 0.965
25 H 0.121 0.879
26 H 0.123 0.877
27 H 0.417 0.583
28 H 0.110 0.890
29 H 0.108 0.892
30 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.650 -19.378 0.872 24.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.145 4.145
3 Si 0.727 3.273
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.561 4.561
8 H 0.081 0.919
9 C -0.012 4.012
10 C -0.721 4.721
11 S 2.689 3.311
12 O -0.950 6.950
13 O -0.951 6.951
14 N -0.885 5.885
15 C 0.069 3.931
16 C -0.087 4.087
17 C -0.211 4.211
18 C -0.236 4.236
19 Br 0.132 6.868
20 N -0.026 5.026
21 O 0.056 5.944
22 H 0.075 0.925
23 H 0.053 0.947
24 H 0.053 0.947
25 H 0.139 0.861
26 H 0.142 0.858
27 H 0.250 0.750
28 H 0.129 0.871
29 H 0.125 0.875
30 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 14.734 -20.960 1.339 25.655
hybrid contribution 1.274 1.709 -0.636 2.225
sum 16.008 -19.250 0.702 25.047
Atomic orbital electron populations
1.69959 1.06133 1.27178 1.49467 1.25071 0.94971 0.99592 0.94853
0.86415 0.79904 0.83161 0.77799 1.19631 1.20800 1.20788 1.21024
0.93092 0.89695 1.52272 0.91935 1.18988 0.92707 0.90492 0.99061
1.30454 1.13765 1.17652 1.10267 1.05753 0.74542 0.76534 0.74302
1.93575 1.71054 1.85238 1.45149 1.93560 1.71032 1.84878 1.45602
1.56025 1.52724 1.53096 1.26612 1.19729 0.93462 0.88378 0.91524
1.24461 0.95526 0.90147 0.98548 1.22538 0.98469 0.94462 1.05595
1.25342 0.98023 0.94838 1.05372 1.96829 1.32157 1.70391 1.87444
1.74128 1.00866 1.12608 1.14980 1.84919 1.38895 1.13794 1.56804
0.92519 0.94748 0.94669 0.86110 0.85831 0.74997 0.87145 0.87459
0.79494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16
2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16
4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.52 -13.69 9.11 -34.44 -0.31 -14.00 16
8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16
9 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16
10 C -0.59 -9.78 6.01 37.16 0.22 -9.55 16
11 S 2.59 40.55 5.46 -107.50 -0.59 39.97 16
12 O -0.96 -18.34 18.08 -57.54 -1.04 -19.38 16
13 O -0.96 -17.93 17.50 -57.54 -1.01 -18.93 16
14 N -1.13 -11.91 5.88 -11.65 -0.07 -11.97 16
15 C 0.20 1.64 6.69 -5.19 -0.03 1.60 16
16 C -0.02 -0.19 6.88 -35.31 -0.24 -0.43 16
17 C -0.19 -1.50 11.09 -39.35 -0.44 -1.93 16
18 C 0.00 0.01 7.84 -16.98 -0.13 -0.12 16
19 Br 0.05 0.41 34.13 -68.01 -2.32 -1.91 16
20 N -0.33 -3.81 12.07 31.68 0.38 -3.42 16
21 O 0.13 1.43 11.19 17.17 0.19 1.62 16
22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16
24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16
25 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16
26 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16
27 H 0.42 3.81 8.61 -34.48 -0.30 3.52 16
28 H 0.11 0.92 7.70 -51.93 -0.40 0.52 16
29 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16
LS Contribution 307.64 15.07 4.64 4.64
Total: -1.00 -34.54 307.64 -8.04 -42.59
By element:
Atomic # 1 Polarization: 1.54 SS G_CDS: -2.77 Total: -1.24 kcal
Atomic # 6 Polarization: -21.29 SS G_CDS: -1.17 Total: -22.47 kcal
Atomic # 7 Polarization: -41.40 SS G_CDS: 1.05 Total: -40.35 kcal
Atomic # 8 Polarization: -34.83 SS G_CDS: -1.85 Total: -36.68 kcal
Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal
Atomic # 16 Polarization: 40.55 SS G_CDS: -0.59 Total: 39.97 kcal
Atomic # 35 Polarization: 0.41 SS G_CDS: -2.32 Total: -1.91 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -34.54 -8.04 -42.59 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000867322938.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.536 kcal
(2) G-P(sol) polarization free energy of solvation -34.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds