Wall clock time and date at job start Tue Mar 31 2020 20:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00352 * 2 1 4 4 H 1.48499 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47113 * 300.00300 * 3 2 1 6 6 H 1.48509 * 109.46992 * 59.99845 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47267 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.53905 * 68.37610 * 11 10 9 13 13 O 1.42103 * 110.54337 * 291.62315 * 11 10 9 14 14 N 1.65603 * 104.44772 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99680 * 65.00243 * 14 11 10 16 16 C 1.50704 * 109.46939 * 164.99723 * 15 14 11 17 17 C 1.35416 * 126.76069 * 90.28204 * 16 15 14 18 18 C 1.41482 * 103.98123 * 180.08968 * 17 16 15 19 19 Br 1.89100 * 126.82020 * 179.91097 * 18 17 16 20 20 N 1.30262 * 106.36500 * 359.64895 * 18 17 16 21 21 O 1.20923 * 111.58315 * 0.22478 * 20 18 17 22 22 H 0.97007 * 119.99858 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47094 * 60.00011 * 9 7 2 24 24 H 1.09005 * 109.47053 * 299.99967 * 9 7 2 25 25 H 1.09006 * 109.46757 * 59.99471 * 10 9 7 26 26 H 1.08998 * 109.46682 * 299.99934 * 10 9 7 27 27 H 0.97001 * 120.00223 * 244.99837 * 14 11 10 28 28 H 1.08997 * 109.47359 * 45.00152 * 15 14 11 29 29 H 1.08996 * 109.47112 * 284.99705 * 15 14 11 30 30 H 1.08001 * 128.01545 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 16 1.3380 -5.2330 -0.0034 12 8 0.6637 -5.4188 -1.2403 13 8 0.6645 -5.4204 1.2338 14 7 2.5202 -6.3928 -0.0052 15 6 3.4194 -6.5239 1.1440 16 6 4.1393 -7.8458 1.0702 17 6 5.3258 -8.0897 0.4648 18 6 5.5443 -9.4702 0.6847 19 35 7.0269 -10.4897 0.1029 20 7 4.5243 -9.8982 1.3725 21 8 3.7342 -9.0104 1.5958 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 2.8718 -3.6051 0.8873 26 1 2.8717 -3.6036 -0.8927 27 1 2.6173 -6.9852 -0.7671 28 1 2.8399 -6.4768 2.0660 29 1 4.1471 -5.7126 1.1303 30 1 5.9583 -7.3924 -0.0644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867322938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:37 Heat of formation + Delta-G solvation = -13.052643 kcal Electronic energy + Delta-G solvation = -18572.047513 eV Core-core repulsion = 15158.390685 eV Total energy + Delta-G solvation = -3413.656828 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 337.977 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.54187 -36.79868 -36.15990 -35.54977 -34.74402 -33.96584 -32.06532 -31.24102 -31.18416 -26.60452 -25.68102 -23.92925 -21.82331 -21.61275 -19.24518 -18.29531 -18.18462 -17.38930 -16.61045 -16.18687 -15.63065 -15.19721 -14.71326 -14.67114 -14.58748 -13.94680 -13.46193 -13.09048 -12.57160 -12.44060 -12.33716 -11.84620 -11.83267 -11.71652 -11.63664 -11.14329 -11.03043 -10.95323 -10.49070 -10.46123 -10.28179 -10.03351 -9.96839 -9.67305 -9.15955 -8.55854 -6.17775 -4.23742 0.49887 0.64122 0.90867 1.47071 2.49274 3.01190 3.21933 3.29607 3.32263 3.71744 4.11907 4.29704 4.32735 4.39999 4.55383 4.61404 4.98211 5.15363 5.17830 5.31295 5.34499 5.53965 5.69593 6.38530 6.78892 7.23560 7.29004 7.54455 7.75062 8.10905 8.80002 9.41624 10.93218 Molecular weight = 337.98amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.216078 B =11698.216978 C =12499.656562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.591 3.409 12 O -0.960 6.960 13 O -0.961 6.961 14 N -1.127 6.127 15 C 0.196 3.804 16 C -0.022 4.022 17 C -0.186 4.186 18 C 0.001 3.999 19 Br 0.050 6.950 20 N -0.327 5.327 21 O 0.130 5.870 22 H 0.265 0.735 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.417 0.583 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.650 -19.378 0.872 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.689 3.311 12 O -0.950 6.950 13 O -0.951 6.951 14 N -0.885 5.885 15 C 0.069 3.931 16 C -0.087 4.087 17 C -0.211 4.211 18 C -0.236 4.236 19 Br 0.132 6.868 20 N -0.026 5.026 21 O 0.056 5.944 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.250 0.750 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 14.734 -20.960 1.339 25.655 hybrid contribution 1.274 1.709 -0.636 2.225 sum 16.008 -19.250 0.702 25.047 Atomic orbital electron populations 1.69959 1.06133 1.27178 1.49467 1.25071 0.94971 0.99592 0.94853 0.86415 0.79904 0.83161 0.77799 1.19631 1.20800 1.20788 1.21024 0.93092 0.89695 1.52272 0.91935 1.18988 0.92707 0.90492 0.99061 1.30454 1.13765 1.17652 1.10267 1.05753 0.74542 0.76534 0.74302 1.93575 1.71054 1.85238 1.45149 1.93560 1.71032 1.84878 1.45602 1.56025 1.52724 1.53096 1.26612 1.19729 0.93462 0.88378 0.91524 1.24461 0.95526 0.90147 0.98548 1.22538 0.98469 0.94462 1.05595 1.25342 0.98023 0.94838 1.05372 1.96829 1.32157 1.70391 1.87444 1.74128 1.00866 1.12608 1.14980 1.84919 1.38895 1.13794 1.56804 0.92519 0.94748 0.94669 0.86110 0.85831 0.74997 0.87145 0.87459 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.69 9.11 -34.44 -0.31 -14.00 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 10 C -0.59 -9.78 6.01 37.16 0.22 -9.55 16 11 S 2.59 40.55 5.46 -107.50 -0.59 39.97 16 12 O -0.96 -18.34 18.08 -57.54 -1.04 -19.38 16 13 O -0.96 -17.93 17.50 -57.54 -1.01 -18.93 16 14 N -1.13 -11.91 5.88 -11.65 -0.07 -11.97 16 15 C 0.20 1.64 6.69 -5.19 -0.03 1.60 16 16 C -0.02 -0.19 6.88 -35.31 -0.24 -0.43 16 17 C -0.19 -1.50 11.09 -39.35 -0.44 -1.93 16 18 C 0.00 0.01 7.84 -16.98 -0.13 -0.12 16 19 Br 0.05 0.41 34.13 -68.01 -2.32 -1.91 16 20 N -0.33 -3.81 12.07 31.68 0.38 -3.42 16 21 O 0.13 1.43 11.19 17.17 0.19 1.62 16 22 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.42 3.81 8.61 -34.48 -0.30 3.52 16 28 H 0.11 0.92 7.70 -51.93 -0.40 0.52 16 29 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -34.54 307.64 -8.04 -42.59 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.77 Total: -1.24 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.17 Total: -22.47 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 1.05 Total: -40.35 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.85 Total: -36.68 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 40.55 SS G_CDS: -0.59 Total: 39.97 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -2.32 Total: -1.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.54 -8.04 -42.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867322938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.536 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds