Wall clock time and date at job start Tue Mar 31 2020 20:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00352 * 2 1 4 4 H 1.48499 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47113 * 300.00300 * 3 2 1 6 6 H 1.48509 * 109.46992 * 59.99845 * 3 2 1 7 7 C 1.37878 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47267 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.53905 * 68.37610 * 11 10 9 13 13 O 1.42103 * 110.54337 * 291.62315 * 11 10 9 14 14 N 1.65603 * 104.44772 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99680 * 65.00243 * 14 11 10 16 16 C 1.50704 * 109.46939 * 164.99723 * 15 14 11 17 17 C 1.35416 * 126.76069 * 90.28204 * 16 15 14 18 18 C 1.41482 * 103.98123 * 180.08968 * 17 16 15 19 19 Br 1.89100 * 126.82020 * 179.91097 * 18 17 16 20 20 N 1.30262 * 106.36500 * 359.64895 * 18 17 16 21 21 O 1.20923 * 111.58315 * 0.22478 * 20 18 17 22 22 H 0.97007 * 119.99858 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47094 * 60.00011 * 9 7 2 24 24 H 1.09005 * 109.47053 * 299.99967 * 9 7 2 25 25 H 1.09006 * 109.46757 * 59.99471 * 10 9 7 26 26 H 1.08998 * 109.46682 * 299.99934 * 10 9 7 27 27 H 0.97001 * 120.00223 * 244.99837 * 14 11 10 28 28 H 1.08997 * 109.47359 * 45.00152 * 15 14 11 29 29 H 1.08996 * 109.47112 * 284.99705 * 15 14 11 30 30 H 1.08001 * 128.01545 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 16 1.3380 -5.2330 -0.0034 12 8 0.6637 -5.4188 -1.2403 13 8 0.6645 -5.4204 1.2338 14 7 2.5202 -6.3928 -0.0052 15 6 3.4194 -6.5239 1.1440 16 6 4.1393 -7.8458 1.0702 17 6 5.3258 -8.0897 0.4648 18 6 5.5443 -9.4702 0.6847 19 35 7.0269 -10.4897 0.1029 20 7 4.5243 -9.8982 1.3725 21 8 3.7342 -9.0104 1.5958 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 2.8718 -3.6051 0.8873 26 1 2.8717 -3.6036 -0.8927 27 1 2.6173 -6.9852 -0.7671 28 1 2.8399 -6.4768 2.0660 29 1 4.1471 -5.7126 1.1303 30 1 5.9583 -7.3924 -0.0644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867322938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:37 Heat of formation + Delta-G solvation = -39.854321 kcal Electronic energy + Delta-G solvation = -18573.209721 eV Core-core repulsion = 15158.390685 eV Total energy + Delta-G solvation = -3414.819036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 337.977 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.27436 -38.16173 -37.09295 -36.86620 -35.82993 -35.45648 -33.06208 -32.83560 -31.88038 -27.53404 -27.36143 -24.63867 -23.55106 -22.37397 -20.39102 -19.28077 -19.02683 -18.77870 -18.00023 -17.28358 -17.01250 -16.48761 -16.18239 -15.62493 -15.44331 -14.94143 -14.59644 -14.43872 -13.89204 -13.65371 -13.18651 -13.15684 -13.11753 -13.06177 -12.91623 -12.87742 -12.71290 -12.17367 -12.05781 -11.69365 -11.60336 -11.15551 -10.93226 -10.76416 -10.60851 -10.47944 -8.21537 -6.34516 -0.72095 -0.04362 0.12763 0.79410 1.45268 1.45748 1.58450 1.79979 1.97985 2.42074 2.86792 3.03734 3.13090 3.31819 3.65095 3.73927 3.89567 4.09309 4.22519 4.43526 4.54156 4.66978 4.77531 4.86968 5.35826 5.37668 5.74731 5.98684 6.11886 6.80921 6.83719 7.35943 8.90852 Molecular weight = 337.98amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.216078 B =11698.216978 C =12499.656562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.016 3.984 10 C -0.583 4.583 11 S 2.622 3.378 12 O -0.998 6.998 13 O -0.994 6.994 14 N -1.110 6.110 15 C 0.187 3.813 16 C -0.024 4.024 17 C -0.171 4.171 18 C -0.011 4.011 19 Br 0.062 6.938 20 N -0.355 5.355 21 O 0.113 5.887 22 H 0.265 0.735 23 H 0.005 0.995 24 H 0.009 0.991 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.426 0.574 28 H 0.110 0.890 29 H 0.150 0.850 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.514 -19.164 0.752 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.795 3.205 4 H -0.175 1.175 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.099 0.901 9 C -0.023 4.023 10 C -0.716 4.716 11 S 2.719 3.281 12 O -0.989 6.989 13 O -0.984 6.984 14 N -0.872 5.872 15 C 0.061 3.939 16 C -0.089 4.089 17 C -0.195 4.195 18 C -0.247 4.247 19 Br 0.143 6.857 20 N -0.056 5.056 21 O 0.040 5.960 22 H 0.074 0.926 23 H 0.023 0.977 24 H 0.027 0.973 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.263 0.737 28 H 0.128 0.872 29 H 0.167 0.833 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 17.609 -20.749 1.216 27.242 hybrid contribution 0.438 1.534 -0.593 1.702 sum 18.047 -19.215 0.623 26.369 Atomic orbital electron populations 1.70109 1.08115 1.28111 1.51305 1.26099 0.95775 1.03862 0.94670 0.85305 0.79417 0.78271 0.77483 1.17540 1.20859 1.20737 1.21593 0.94190 0.90644 1.50791 0.90090 1.18857 0.93817 0.93189 0.96477 1.30318 1.12689 1.15270 1.13321 1.04508 0.74450 0.76509 0.72649 1.93519 1.72738 1.85885 1.46727 1.93519 1.72475 1.85443 1.46940 1.55445 1.52244 1.51650 1.27852 1.20151 0.93968 0.89447 0.90346 1.24577 0.95890 0.89692 0.98751 1.22929 0.98140 0.93919 1.04506 1.25730 0.98014 0.95988 1.05007 1.96838 1.31251 1.70428 1.87196 1.74129 1.01786 1.13414 1.16304 1.84885 1.39206 1.14481 1.57412 0.92574 0.97711 0.97302 0.82720 0.83217 0.73749 0.87179 0.83303 0.76403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 13.29 21.45 0.28 -55.07 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.53 -27.55 9.11 25.60 0.23 -27.32 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.75 16 9 C 0.02 0.75 4.98 29.85 0.15 0.90 16 10 C -0.58 -18.15 6.01 71.98 0.43 -17.71 16 11 S 2.62 79.29 5.46 -56.49 -0.31 78.98 16 12 O -1.00 -38.04 18.08 -127.65 -2.31 -40.35 16 13 O -0.99 -36.79 17.50 -127.65 -2.23 -39.03 16 14 N -1.11 -20.59 5.88 -190.79 -1.12 -21.71 16 15 C 0.19 2.50 6.69 85.63 0.57 3.08 16 16 C -0.02 -0.36 6.88 25.03 0.17 -0.19 16 17 C -0.17 -2.20 11.09 22.42 0.25 -1.95 16 18 C -0.01 -0.20 7.84 85.73 0.67 0.47 16 19 Br 0.06 0.91 34.13 -20.37 -0.70 0.21 16 20 N -0.35 -7.92 12.07 -55.01 -0.66 -8.58 16 21 O 0.11 2.35 11.19 71.61 0.80 3.15 16 22 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 23 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 26 H 0.15 3.88 8.14 -2.39 -0.02 3.86 16 27 H 0.43 6.71 8.61 -96.74 -0.83 5.88 16 28 H 0.11 1.56 7.70 -2.39 -0.02 1.54 16 29 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -76.80 307.64 -0.92 -77.72 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.36 Total: 3.78 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 2.94 Total: -42.59 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.50 Total: -85.36 kcal Atomic # 8 Polarization: -72.48 SS G_CDS: -3.74 Total: -76.22 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 79.29 SS G_CDS: -0.31 Total: 78.98 kcal Atomic # 35 Polarization: 0.91 SS G_CDS: -0.70 Total: 0.21 kcal Total: -76.80 -0.92 -77.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867322938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.867 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds