Wall clock time and date at job start Tue Mar 31 2020 20:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47195 * 174.78626 * 3 2 1 5 5 C 1.37091 * 119.99939 * 264.13951 * 4 3 2 6 6 H 1.07997 * 120.00225 * 197.43491 * 5 4 3 7 7 C 1.38952 * 120.00155 * 17.43887 * 5 4 3 8 8 N 1.31412 * 119.99919 * 21.51625 * 7 5 4 9 9 Si 1.86802 * 119.99872 * 201.52174 * 7 5 4 10 10 H 1.48499 * 109.47261 * 59.99711 * 9 7 5 11 11 H 1.48504 * 109.46988 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47382 * 299.99463 * 9 7 5 13 13 C 1.34774 * 120.00006 * 84.14045 * 4 3 2 14 14 O 1.21292 * 119.99946 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99938 * 0.02562 * 13 4 3 16 16 N 1.46503 * 109.46917 * 180.02562 * 15 13 4 17 17 C 1.35793 * 119.60569 * 270.01685 * 16 15 13 18 18 C 1.35290 * 120.70799 * 179.97438 * 17 16 15 19 19 C 1.40335 * 119.92309 * 0.02562 * 18 17 16 20 20 Br 1.89096 * 120.38314 * 179.97438 * 19 18 17 21 21 C 1.36559 * 119.23454 * 359.70859 * 19 18 17 22 22 C 1.34647 * 119.60731 * 90.00220 * 16 15 13 23 23 O 1.22076 * 119.97557 * 0.02562 * 22 16 15 24 24 H 4.40639 * 5.51562 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47093 * 54.78802 * 3 2 1 26 26 H 1.09000 * 109.47518 * 294.78842 * 3 2 1 27 27 H 0.97002 * 119.99497 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47057 * 60.00257 * 15 13 4 29 29 H 1.09003 * 109.46951 * 299.99906 * 15 13 4 30 30 H 1.07992 * 119.64737 * 0.02562 * 17 16 15 31 31 H 1.07995 * 120.04042 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.35244 * 180.27129 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3764 -0.1255 5 6 3.4762 1.8726 -1.3567 6 1 4.0883 2.7593 -1.4304 7 6 3.0359 1.2347 -2.5099 8 7 1.9849 0.4471 -2.4646 9 14 3.9379 1.4966 -4.1246 10 1 5.3468 1.0492 -3.9828 11 1 3.2746 0.7100 -5.1954 12 1 3.9097 2.9383 -4.4793 13 6 3.2456 2.1542 0.9694 14 8 3.6490 3.2934 0.8654 15 6 2.8696 1.6086 2.3230 16 7 3.0786 2.6412 3.3410 17 6 4.2822 2.7367 3.9624 18 6 4.4998 3.6821 4.9054 19 6 3.4745 4.5763 5.2498 20 35 3.7642 5.9022 6.5665 21 6 2.2670 4.4813 4.6192 22 6 2.0751 3.4844 3.6490 23 8 0.9990 3.3852 3.0812 24 1 -1.0502 -0.0003 0.0002 25 1 3.0095 -0.5917 -0.8396 26 1 3.0095 -0.4300 0.9330 27 1 1.6777 0.0015 -3.2696 28 1 3.4906 0.7423 2.5508 29 1 1.8207 1.3122 2.3166 30 1 5.0745 2.0512 3.7005 31 1 5.4614 3.7486 5.3925 32 1 1.4668 5.1629 4.8671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868040381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:58 Heat of formation + Delta-G solvation = 49.017824 kcal Electronic energy + Delta-G solvation = -20849.761387 eV Core-core repulsion = 17439.185280 eV Total energy + Delta-G solvation = -3410.576107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27845 -38.62259 -36.78878 -35.46056 -34.54780 -32.25163 -31.34117 -30.95434 -29.83541 -28.03781 -26.47140 -24.58994 -23.81088 -22.38684 -19.63292 -18.03728 -17.50674 -17.19528 -16.88631 -16.50669 -16.05803 -15.21518 -14.64533 -14.51298 -14.41075 -14.12133 -13.88608 -12.99689 -12.72009 -12.40075 -12.34165 -12.29251 -12.24303 -11.73845 -11.55157 -11.28946 -11.05415 -10.61870 -10.52422 -10.41760 -9.81209 -9.67289 -9.42160 -9.36675 -8.99407 -8.64134 -8.00995 -7.88295 -6.43622 -3.97435 0.68379 1.34739 1.84583 2.70556 3.09377 3.19683 3.22502 3.49059 3.67880 3.80027 3.97125 4.11030 4.53044 4.73973 4.77948 4.95521 5.05685 5.11395 5.29245 5.36706 5.53066 5.61192 5.75711 5.93439 5.99599 6.13006 6.43364 6.60882 6.96084 7.17508 7.46642 7.86499 8.17084 8.28174 8.75743 8.98325 9.19476 9.70139 10.56497 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.003053 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.215625 B = 9168.157372 C = 9756.679189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.127 4.127 3 C 0.230 3.770 4 N -0.429 5.429 5 C -0.319 4.319 6 H 0.105 0.895 7 C 0.035 3.965 8 N -0.857 5.857 9 Si 0.924 3.076 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.433 3.567 14 O -0.572 6.572 15 C 0.074 3.926 16 N -0.468 5.468 17 C 0.172 3.828 18 C -0.235 4.235 19 C 0.015 3.985 20 Br -0.043 7.043 21 C -0.207 4.207 22 C 0.524 3.476 23 O -0.532 6.532 24 H 0.200 0.800 25 H 0.114 0.886 26 H 0.061 0.939 27 H 0.271 0.729 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.151 0.849 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 0.700 16.869 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.129 4.129 3 C 0.107 3.893 4 N -0.147 5.147 5 C -0.446 4.446 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.220 3.780 14 O -0.455 6.455 15 C -0.051 4.051 16 N -0.176 5.176 17 C 0.041 3.959 18 C -0.259 4.259 19 C -0.069 4.069 20 Br 0.043 6.957 21 C -0.232 4.232 22 C 0.323 3.677 23 O -0.412 6.412 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.821 1.542 16.734 17.483 hybrid contribution -0.021 -0.212 -1.302 1.320 sum 4.800 1.330 15.431 16.215 Atomic orbital electron populations 1.24336 0.95449 1.01060 1.05414 1.23038 0.94293 0.99287 0.96275 1.18307 0.84539 0.85521 1.00923 1.43674 1.55140 1.09588 1.06320 1.19627 1.30583 1.13768 0.80614 0.87697 1.25326 0.95001 0.97147 0.99610 1.70091 1.19307 1.29978 1.30002 0.86029 0.79524 0.78785 0.80608 1.19765 1.20918 1.19773 1.19916 0.85997 0.86603 0.85460 1.90578 1.51130 1.18057 1.85783 1.21983 1.05901 0.89349 0.87908 1.45178 1.11593 1.29013 1.31821 1.21917 0.87485 0.96672 0.89781 1.20357 1.00659 0.99580 1.05336 1.22107 0.96058 0.94213 0.94496 1.96732 1.96882 1.51073 1.51019 1.22160 0.98375 1.02616 1.00021 1.16793 0.84151 0.82327 0.84392 1.91011 1.24582 1.71514 1.54126 0.78268 0.86859 0.92120 0.91858 0.87467 0.86147 0.81440 0.83096 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -5.08 19.25 29.55 0.57 -4.51 16 2 C -0.13 -2.79 10.88 -37.12 -0.40 -3.19 16 3 C 0.23 4.75 4.91 -6.83 -0.03 4.72 16 4 N -0.43 -10.34 2.60 -117.93 -0.31 -10.65 16 5 C -0.32 -8.50 9.32 -14.94 -0.14 -8.64 16 6 H 0.11 2.96 7.38 -52.49 -0.39 2.57 16 7 C 0.03 0.87 4.87 -17.47 -0.08 0.79 16 8 N -0.86 -21.89 9.48 55.50 0.53 -21.36 16 9 Si 0.92 19.90 29.60 -169.99 -5.03 14.87 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.43 10.09 7.63 -10.98 -0.08 10.01 16 14 O -0.57 -15.49 16.08 5.55 0.09 -15.40 16 15 C 0.07 1.30 4.42 -5.19 -0.02 1.27 16 16 N -0.47 -7.86 2.07 -121.11 -0.25 -8.11 16 17 C 0.17 2.17 10.28 -16.85 -0.17 1.99 16 18 C -0.23 -2.72 9.79 -39.84 -0.39 -3.11 16 19 C 0.01 0.20 6.24 -39.40 -0.25 -0.05 16 20 Br -0.04 -0.46 33.73 -68.01 -2.29 -2.76 16 21 C -0.21 -3.23 9.73 -39.37 -0.38 -3.62 16 22 C 0.52 9.99 7.40 -15.49 -0.11 9.87 16 23 O -0.53 -12.33 16.64 4.85 0.08 -12.25 16 24 H 0.20 3.46 7.80 -54.08 -0.42 3.03 16 25 H 0.11 2.45 6.44 -51.93 -0.33 2.12 16 26 H 0.06 0.96 6.69 -51.93 -0.35 0.62 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.11 1.35 7.29 -51.93 -0.38 0.97 16 29 H 0.12 2.27 6.75 -51.93 -0.35 1.92 16 30 H 0.17 1.48 8.04 -52.49 -0.42 1.06 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -34.10 311.05 -6.63 -40.73 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.62 Total: 4.72 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.51 Total: 5.52 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: -0.03 Total: -40.13 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.17 Total: -27.64 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.10 -6.63 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.746 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds