Wall clock time and date at job start Tue Mar 31 2020 20:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47195 * 174.78626 * 3 2 1 5 5 C 1.37091 * 119.99939 * 264.13951 * 4 3 2 6 6 H 1.07997 * 120.00225 * 197.43491 * 5 4 3 7 7 C 1.38952 * 120.00155 * 17.43887 * 5 4 3 8 8 N 1.31412 * 119.99919 * 21.51625 * 7 5 4 9 9 Si 1.86802 * 119.99872 * 201.52174 * 7 5 4 10 10 H 1.48499 * 109.47261 * 59.99711 * 9 7 5 11 11 H 1.48504 * 109.46988 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47382 * 299.99463 * 9 7 5 13 13 C 1.34774 * 120.00006 * 84.14045 * 4 3 2 14 14 O 1.21292 * 119.99946 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99938 * 0.02562 * 13 4 3 16 16 N 1.46503 * 109.46917 * 180.02562 * 15 13 4 17 17 C 1.35793 * 119.60569 * 270.01685 * 16 15 13 18 18 C 1.35290 * 120.70799 * 179.97438 * 17 16 15 19 19 C 1.40335 * 119.92309 * 0.02562 * 18 17 16 20 20 Br 1.89096 * 120.38314 * 179.97438 * 19 18 17 21 21 C 1.36559 * 119.23454 * 359.70859 * 19 18 17 22 22 C 1.34647 * 119.60731 * 90.00220 * 16 15 13 23 23 O 1.22076 * 119.97557 * 0.02562 * 22 16 15 24 24 H 4.40639 * 5.51562 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47093 * 54.78802 * 3 2 1 26 26 H 1.09000 * 109.47518 * 294.78842 * 3 2 1 27 27 H 0.97002 * 119.99497 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47057 * 60.00257 * 15 13 4 29 29 H 1.09003 * 109.46951 * 299.99906 * 15 13 4 30 30 H 1.07992 * 119.64737 * 0.02562 * 17 16 15 31 31 H 1.07995 * 120.04042 * 180.02562 * 18 17 16 32 32 H 1.07998 * 120.35244 * 180.27129 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3764 -0.1255 5 6 3.4762 1.8726 -1.3567 6 1 4.0883 2.7593 -1.4304 7 6 3.0359 1.2347 -2.5099 8 7 1.9849 0.4471 -2.4646 9 14 3.9379 1.4966 -4.1246 10 1 5.3468 1.0492 -3.9828 11 1 3.2746 0.7100 -5.1954 12 1 3.9097 2.9383 -4.4793 13 6 3.2456 2.1542 0.9694 14 8 3.6490 3.2934 0.8654 15 6 2.8696 1.6086 2.3230 16 7 3.0786 2.6412 3.3410 17 6 4.2822 2.7367 3.9624 18 6 4.4998 3.6821 4.9054 19 6 3.4745 4.5763 5.2498 20 35 3.7642 5.9022 6.5665 21 6 2.2670 4.4813 4.6192 22 6 2.0751 3.4844 3.6490 23 8 0.9990 3.3852 3.0812 24 1 -1.0502 -0.0003 0.0002 25 1 3.0095 -0.5917 -0.8396 26 1 3.0095 -0.4300 0.9330 27 1 1.6777 0.0015 -3.2696 28 1 3.4906 0.7423 2.5508 29 1 1.8207 1.3122 2.3166 30 1 5.0745 2.0512 3.7005 31 1 5.4614 3.7486 5.3925 32 1 1.4668 5.1629 4.8671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868040381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:57 Heat of formation + Delta-G solvation = 27.349484 kcal Electronic energy + Delta-G solvation = -20850.700996 eV Core-core repulsion = 17439.185280 eV Total energy + Delta-G solvation = -3411.515717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.56737 -40.36482 -38.14151 -37.20887 -35.87227 -34.07639 -33.08930 -32.06071 -30.99281 -29.50882 -28.13944 -26.34817 -24.95906 -23.70005 -21.28489 -19.78095 -18.76309 -18.62076 -18.45141 -18.12711 -17.26637 -16.88420 -16.19319 -16.08990 -15.97634 -15.44662 -15.27058 -14.58597 -14.41067 -14.00510 -13.63337 -13.48449 -13.45611 -13.40290 -13.00561 -12.78537 -12.54575 -12.49521 -12.17631 -11.49243 -11.22884 -11.19472 -11.14303 -10.81724 -10.65615 -10.33001 -9.89856 -9.12149 -8.35385 -5.97290 -0.44855 0.30676 0.71777 1.34575 1.40804 1.46150 1.53944 1.77785 2.10756 2.29507 2.34956 2.44242 3.00430 3.10394 3.58625 3.63291 3.80313 3.92379 3.95035 4.05420 4.14494 4.34401 4.50777 4.62563 4.87946 4.95041 4.95929 5.36918 5.38802 5.44641 5.95107 5.97864 6.36697 6.84425 7.07814 7.11197 7.33160 7.85899 8.62256 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.003053 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.215625 B = 9168.157372 C = 9756.679189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.156 4.156 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.354 4.354 6 H 0.076 0.924 7 C 0.006 3.994 8 N -0.869 5.869 9 Si 0.985 3.015 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.284 1.284 13 C 0.426 3.574 14 O -0.621 6.621 15 C 0.085 3.915 16 N -0.472 5.472 17 C 0.164 3.836 18 C -0.222 4.222 19 C 0.027 3.973 20 Br -0.014 7.014 21 C -0.239 4.239 22 C 0.506 3.494 23 O -0.597 6.597 24 H 0.226 0.774 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.273 0.727 28 H 0.167 0.833 29 H 0.107 0.893 30 H 0.214 0.786 31 H 0.192 0.808 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -0.347 18.254 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.158 4.158 3 C 0.107 3.893 4 N -0.158 5.158 5 C -0.482 4.482 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.506 5.506 9 Si 0.809 3.191 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.210 1.210 13 C 0.214 3.786 14 O -0.508 6.508 15 C -0.040 4.040 16 N -0.179 5.179 17 C 0.035 3.965 18 C -0.245 4.245 19 C -0.057 4.057 20 Br 0.072 6.928 21 C -0.263 4.263 22 C 0.309 3.691 23 O -0.484 6.484 24 H 0.243 0.757 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.185 0.815 29 H 0.125 0.875 30 H 0.230 0.770 31 H 0.209 0.791 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.836 0.462 18.160 19.410 hybrid contribution -0.573 0.192 -1.620 1.729 sum 6.263 0.654 16.541 17.699 Atomic orbital electron populations 1.25144 0.96547 1.00152 1.04827 1.23546 0.95230 1.00089 0.96923 1.18516 0.84023 0.83702 1.03014 1.43861 1.55075 1.11038 1.05847 1.19527 1.31929 1.14041 0.82666 0.90613 1.25987 0.95260 0.96594 1.01968 1.70185 1.19571 1.30010 1.30786 0.85136 0.79091 0.77882 0.77026 1.18438 1.19881 1.21033 1.20838 0.84410 0.86026 0.87286 1.90533 1.53035 1.20213 1.87001 1.21898 1.06176 0.90924 0.84961 1.45209 1.12655 1.28474 1.31571 1.22782 0.86720 0.97754 0.89203 1.20933 1.01503 0.97832 1.04218 1.22395 0.95310 0.94304 0.93722 1.96771 1.96582 1.49982 1.49434 1.22016 1.00028 1.03072 1.01203 1.17312 0.83969 0.83089 0.84768 1.90955 1.27016 1.73555 1.56835 0.75739 0.88155 0.86937 0.91647 0.81528 0.87536 0.76971 0.79087 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.26 19.25 74.32 1.43 -8.83 16 2 C -0.16 -6.80 10.88 31.13 0.34 -6.46 16 3 C 0.23 9.28 4.91 84.57 0.42 9.69 16 4 N -0.44 -21.41 2.60 -645.41 -1.68 -23.09 16 5 C -0.35 -19.38 9.32 84.04 0.78 -18.60 16 6 H 0.08 4.49 7.38 -2.91 -0.02 4.46 16 7 C 0.01 0.31 4.87 84.93 0.41 0.73 16 8 N -0.87 -44.48 9.48 21.66 0.21 -44.28 16 9 Si 0.98 41.00 29.60 68.60 2.03 43.03 16 10 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.43 19.94 7.63 87.66 0.67 20.61 16 14 O -0.62 -34.54 16.08 -3.07 -0.05 -34.58 16 15 C 0.09 2.89 4.42 85.63 0.38 3.27 16 16 N -0.47 -15.34 2.07 -655.20 -1.36 -16.69 16 17 C 0.16 3.59 10.28 83.40 0.86 4.44 16 18 C -0.22 -4.34 9.79 22.10 0.22 -4.12 16 19 C 0.03 0.66 6.24 22.39 0.14 0.80 16 20 Br -0.01 -0.27 33.73 -20.37 -0.69 -0.96 16 21 C -0.24 -7.53 9.73 22.41 0.22 -7.31 16 22 C 0.51 19.77 7.40 84.79 0.63 20.40 16 23 O -0.60 -29.29 16.64 -5.56 -0.09 -29.38 16 24 H 0.23 7.60 7.80 -4.41 -0.03 7.57 16 25 H 0.10 4.29 6.44 -2.39 -0.02 4.28 16 26 H 0.11 3.25 6.69 -2.39 -0.02 3.23 16 27 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.17 3.50 7.29 -2.39 -0.02 3.49 16 29 H 0.11 4.00 6.75 -2.39 -0.02 3.99 16 30 H 0.21 2.62 8.04 -2.91 -0.02 2.60 16 31 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -79.70 311.05 6.02 -73.68 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.16 Total: 17.66 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.49 Total: 14.61 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.83 Total: -84.06 kcal Atomic # 8 Polarization: -63.82 SS G_CDS: -0.14 Total: -63.96 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.96 kcal Total: -79.70 6.02 -73.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.028 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds