Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47057 * 243.26622 * 3 2 1 5 5 C 1.36903 * 119.99773 * 264.72816 * 4 3 2 6 6 H 1.08000 * 119.99962 * 198.74054 * 5 4 3 7 7 C 1.39027 * 120.00113 * 18.73692 * 5 4 3 8 8 N 1.31384 * 119.99939 * 22.52846 * 7 5 4 9 9 Si 1.86799 * 119.99992 * 202.53378 * 7 5 4 10 10 H 1.48500 * 109.47345 * 59.99669 * 9 7 5 11 11 H 1.48495 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46806 * 299.99722 * 9 7 5 13 13 C 1.34773 * 119.99919 * 84.73181 * 4 3 2 14 14 O 1.21627 * 119.99498 * 180.02562 * 13 4 3 15 15 C 1.47414 * 120.00191 * 359.97438 * 13 4 3 16 16 C 1.40051 * 120.59396 * 89.72177 * 15 13 4 17 17 C 1.50705 * 120.83271 * 0.02562 * 16 15 13 18 18 C 1.38396 * 118.33354 * 179.77745 * 16 15 13 19 19 Br 1.89103 * 120.27656 * 180.24102 * 18 16 15 20 20 C 1.38450 * 119.44451 * 0.50420 * 18 16 15 21 21 N 1.31892 * 121.18547 * 359.74117 * 20 18 16 22 22 C 1.32211 * 121.81417 * 359.97438 * 21 20 18 23 23 O 1.35451 * 119.78866 * 180.02562 * 22 21 20 24 24 H 4.40642 * 5.51442 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46892 * 123.26225 * 3 2 1 26 26 H 1.09004 * 109.47082 * 3.26521 * 3 2 1 27 27 H 0.97002 * 119.99474 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47259 * 89.99339 * 17 16 15 29 29 H 1.08999 * 109.46980 * 209.99578 * 17 16 15 30 30 H 1.09000 * 109.47019 * 329.99780 * 17 16 15 31 31 H 1.08003 * 119.40345 * 179.71708 * 20 18 16 32 32 H 0.96705 * 114.00113 * 269.98120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6222 1.2336 5 6 3.4643 1.9508 1.2464 6 1 4.0941 2.3431 2.0312 7 6 2.9891 2.7949 0.2492 8 7 1.9111 2.4699 -0.4280 9 14 3.8833 4.3909 -0.1281 10 1 5.2765 4.0910 -0.5457 11 1 3.1804 5.1050 -1.2240 12 1 3.9036 5.2458 1.0860 13 6 3.2579 -0.1139 2.3557 14 8 3.6627 0.4023 3.3799 15 6 2.9019 -1.5443 2.3420 16 6 3.8600 -2.5143 2.0219 17 6 5.2751 -2.1206 1.6850 18 6 3.4760 -3.8439 2.0278 19 35 4.7268 -5.1994 1.6107 20 6 2.1670 -4.1729 2.3363 21 7 1.2799 -3.2421 2.6299 22 6 1.5954 -1.9582 2.6441 23 8 0.6517 -1.0367 2.9519 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5645 -0.8593 26 1 3.0098 -1.0252 -0.0585 27 1 1.5793 3.0591 -1.1235 28 1 5.8731 -2.0993 2.5961 29 1 5.6982 -2.8454 0.9895 30 1 5.2776 -1.1320 1.2257 31 1 1.8669 -5.2104 2.3363 32 1 0.1607 -0.7060 2.1872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868040715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = 37.709919 kcal Electronic energy + Delta-G solvation = -21626.221142 eV Core-core repulsion = 18215.154688 eV Total energy + Delta-G solvation = -3411.066455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68283 -38.36731 -37.03435 -35.33697 -33.95621 -32.33859 -31.87311 -31.32829 -29.10124 -27.87391 -26.68310 -25.32903 -23.42107 -22.02649 -19.74932 -18.28961 -18.08057 -17.32702 -16.83776 -16.46984 -15.86162 -15.03581 -14.63534 -14.35232 -14.10683 -13.75812 -13.42347 -12.94885 -12.74906 -12.59517 -12.41931 -12.29375 -11.86389 -11.73685 -11.49885 -11.11147 -11.07689 -10.67600 -10.48697 -10.37089 -9.74775 -9.56959 -9.42735 -9.35360 -9.12676 -8.77455 -8.47936 -8.05741 -6.50398 -4.02875 0.81287 1.10512 1.47213 3.05848 3.17420 3.19537 3.37394 3.44774 3.58717 3.76901 3.87171 4.02763 4.50925 4.61684 4.69952 4.86654 5.10071 5.21774 5.33619 5.44014 5.63246 5.70754 5.79789 6.03095 6.11892 6.13980 6.40666 6.49080 6.77443 7.41741 7.63256 7.84690 7.89129 8.23342 8.50230 8.92848 9.13867 9.67730 10.50141 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.004532 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.410889 B = 6176.668045 C = 6804.500557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.110 4.110 3 C 0.228 3.772 4 N -0.424 5.424 5 C -0.321 4.321 6 H 0.108 0.892 7 C 0.036 3.964 8 N -0.855 5.855 9 Si 0.924 3.076 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.497 3.503 14 O -0.562 6.562 15 C -0.153 4.153 16 C 0.023 3.977 17 C -0.130 4.130 18 C -0.167 4.167 19 Br -0.035 7.035 20 C 0.159 3.841 21 N -0.499 5.499 22 C 0.361 3.639 23 O -0.471 6.471 24 H 0.206 0.794 25 H 0.113 0.887 26 H 0.060 0.940 27 H 0.272 0.728 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 -14.240 -2.664 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.112 4.112 3 C 0.105 3.895 4 N -0.141 5.141 5 C -0.448 4.448 6 H 0.125 0.875 7 C -0.169 4.169 8 N -0.492 5.492 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.284 3.716 14 O -0.445 6.445 15 C -0.160 4.160 16 C 0.013 3.987 17 C -0.186 4.186 18 C -0.249 4.249 19 Br 0.049 6.951 20 C -0.001 4.001 21 N -0.219 5.219 22 C 0.182 3.818 23 O -0.282 6.282 24 H 0.223 0.777 25 H 0.130 0.870 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.913 -14.577 -1.716 14.964 hybrid contribution 0.128 1.504 -0.850 1.732 sum 3.040 -13.073 -2.565 13.665 Atomic orbital electron populations 1.24403 0.95520 1.05837 1.02333 1.23215 0.94399 0.95718 0.97853 1.18285 0.84422 0.96035 0.90768 1.43634 1.55108 1.09310 1.06056 1.19635 1.29601 0.82690 1.12839 0.87475 1.25343 0.94827 0.99514 0.97262 1.70049 1.17594 1.38601 1.22959 0.86030 0.79549 0.81072 0.78350 1.19704 1.20936 1.19657 1.17326 0.85668 0.84387 0.84211 1.90674 1.50639 1.71972 1.31202 1.21303 0.94197 0.97165 1.03370 1.20253 0.96744 0.90093 0.91573 1.21085 0.90513 1.03725 1.03274 1.22681 0.96097 0.93324 1.12811 1.96643 1.57249 1.47997 1.93222 1.22548 0.86697 0.98765 0.92064 1.67331 1.37075 1.01252 1.16199 1.19227 0.86702 0.85941 0.89882 1.84688 1.51348 1.54877 1.37283 0.77723 0.86958 0.92164 0.91765 0.89213 0.89898 0.89534 0.81496 0.73390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.87 17.18 29.55 0.51 -4.36 16 2 C -0.11 -2.27 10.15 -37.12 -0.38 -2.65 16 3 C 0.23 4.77 4.91 -6.83 -0.03 4.74 16 4 N -0.42 -10.11 2.59 -119.16 -0.31 -10.41 16 5 C -0.32 -8.32 9.29 -14.99 -0.14 -8.45 16 6 H 0.11 2.94 7.41 -52.49 -0.39 2.55 16 7 C 0.04 0.89 4.82 -17.45 -0.08 0.80 16 8 N -0.86 -20.99 9.55 55.50 0.53 -20.46 16 9 Si 0.92 19.35 29.61 -169.99 -5.03 14.32 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.50 11.96 5.18 -12.53 -0.06 11.89 16 14 O -0.56 -15.68 16.76 5.25 0.09 -15.60 16 15 C -0.15 -3.09 3.92 -104.69 -0.41 -3.50 16 16 C 0.02 0.39 5.52 -103.88 -0.57 -0.19 16 17 C -0.13 -1.92 9.25 36.01 0.33 -1.58 16 18 C -0.17 -2.40 6.23 -39.45 -0.25 -2.65 16 19 Br -0.04 -0.40 31.95 -68.01 -2.17 -2.57 16 20 C 0.16 2.28 10.92 -17.45 -0.19 2.09 16 21 N -0.50 -8.73 10.37 -12.94 -0.13 -8.87 16 22 C 0.36 7.18 7.34 -16.60 -0.12 7.06 16 23 O -0.47 -9.85 13.02 -18.04 -0.23 -10.09 16 24 H 0.21 3.02 7.80 -54.08 -0.42 2.60 16 25 H 0.11 2.43 6.60 -51.93 -0.34 2.09 16 26 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 27 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.01 6.78 -51.93 -0.35 0.66 16 30 H 0.09 1.42 7.19 -51.93 -0.37 1.05 16 31 H 0.17 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.40 7.63 5.86 45.56 0.27 7.90 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -30.04 302.78 -6.04 -36.09 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -1.94 Total: 9.82 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.40 Total: 3.20 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.09 Total: -39.74 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.15 Total: -25.68 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.17 Total: -2.57 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.04 -6.04 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.797 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds