Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47057 * 243.26622 * 3 2 1 5 5 C 1.36903 * 119.99773 * 264.72816 * 4 3 2 6 6 H 1.08000 * 119.99962 * 198.74054 * 5 4 3 7 7 C 1.39027 * 120.00113 * 18.73692 * 5 4 3 8 8 N 1.31384 * 119.99939 * 22.52846 * 7 5 4 9 9 Si 1.86799 * 119.99992 * 202.53378 * 7 5 4 10 10 H 1.48500 * 109.47345 * 59.99669 * 9 7 5 11 11 H 1.48495 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46806 * 299.99722 * 9 7 5 13 13 C 1.34773 * 119.99919 * 84.73181 * 4 3 2 14 14 O 1.21627 * 119.99498 * 180.02562 * 13 4 3 15 15 C 1.47414 * 120.00191 * 359.97438 * 13 4 3 16 16 C 1.40051 * 120.59396 * 89.72177 * 15 13 4 17 17 C 1.50705 * 120.83271 * 0.02562 * 16 15 13 18 18 C 1.38396 * 118.33354 * 179.77745 * 16 15 13 19 19 Br 1.89103 * 120.27656 * 180.24102 * 18 16 15 20 20 C 1.38450 * 119.44451 * 0.50420 * 18 16 15 21 21 N 1.31892 * 121.18547 * 359.74117 * 20 18 16 22 22 C 1.32211 * 121.81417 * 359.97438 * 21 20 18 23 23 O 1.35451 * 119.78866 * 180.02562 * 22 21 20 24 24 H 4.40642 * 5.51442 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.46892 * 123.26225 * 3 2 1 26 26 H 1.09004 * 109.47082 * 3.26521 * 3 2 1 27 27 H 0.97002 * 119.99474 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47259 * 89.99339 * 17 16 15 29 29 H 1.08999 * 109.46980 * 209.99578 * 17 16 15 30 30 H 1.09000 * 109.47019 * 329.99780 * 17 16 15 31 31 H 1.08003 * 119.40345 * 179.71708 * 20 18 16 32 32 H 0.96705 * 114.00113 * 269.98120 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6222 1.2336 5 6 3.4643 1.9508 1.2464 6 1 4.0941 2.3431 2.0312 7 6 2.9891 2.7949 0.2492 8 7 1.9111 2.4699 -0.4280 9 14 3.8833 4.3909 -0.1281 10 1 5.2765 4.0910 -0.5457 11 1 3.1804 5.1050 -1.2240 12 1 3.9036 5.2458 1.0860 13 6 3.2579 -0.1139 2.3557 14 8 3.6627 0.4023 3.3799 15 6 2.9019 -1.5443 2.3420 16 6 3.8600 -2.5143 2.0219 17 6 5.2751 -2.1206 1.6850 18 6 3.4760 -3.8439 2.0278 19 35 4.7268 -5.1994 1.6107 20 6 2.1670 -4.1729 2.3363 21 7 1.2799 -3.2421 2.6299 22 6 1.5954 -1.9582 2.6441 23 8 0.6517 -1.0367 2.9519 24 1 -1.0501 0.0001 -0.0002 25 1 3.0091 0.5645 -0.8593 26 1 3.0098 -1.0252 -0.0585 27 1 1.5793 3.0591 -1.1235 28 1 5.8731 -2.0993 2.5961 29 1 5.6982 -2.8454 0.9895 30 1 5.2776 -1.1320 1.2257 31 1 1.8669 -5.2104 2.3363 32 1 0.1607 -0.7060 2.1872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868040715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = 16.064690 kcal Electronic energy + Delta-G solvation = -21627.159750 eV Core-core repulsion = 18215.154688 eV Total energy + Delta-G solvation = -3412.005062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11734 -40.08484 -38.50805 -37.18520 -35.30497 -34.06675 -33.32441 -32.87493 -30.40167 -29.12904 -28.38684 -27.04723 -24.94747 -23.38086 -21.42196 -19.87159 -19.65488 -18.84124 -18.41439 -18.14838 -17.28372 -16.81306 -16.10711 -15.94167 -15.67880 -15.19467 -14.90883 -14.32917 -14.22562 -14.13189 -13.98952 -13.80434 -13.58210 -13.11830 -12.93795 -12.82553 -12.56048 -12.19919 -12.16457 -11.45514 -11.33331 -11.25674 -10.99904 -10.81056 -10.68113 -10.35391 -9.94736 -9.85098 -8.39118 -6.00136 -0.51582 -0.21808 0.33247 1.33602 1.44063 1.52844 1.70098 1.96592 2.09141 2.21474 2.30973 2.47436 2.90731 2.97776 3.38282 3.43610 3.62432 3.77053 3.95903 4.12498 4.23068 4.46243 4.50139 4.51808 4.79258 4.83125 4.91324 5.15525 5.30240 5.43405 5.93967 6.21506 6.34156 6.54081 6.97568 7.02626 7.26104 7.82528 8.59002 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.004532 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.410889 B = 6176.668045 C = 6804.500557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.155 4.155 3 C 0.234 3.766 4 N -0.426 5.426 5 C -0.358 4.358 6 H 0.079 0.921 7 C 0.012 3.988 8 N -0.861 5.861 9 Si 0.985 3.015 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.280 1.280 13 C 0.495 3.505 14 O -0.619 6.619 15 C -0.178 4.178 16 C 0.023 3.977 17 C -0.127 4.127 18 C -0.162 4.162 19 Br 0.007 6.993 20 C 0.171 3.829 21 N -0.506 5.506 22 C 0.345 3.655 23 O -0.490 6.490 24 H 0.241 0.759 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.276 0.724 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.212 0.788 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -16.317 -4.028 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.157 4.157 3 C 0.112 3.888 4 N -0.141 5.141 5 C -0.485 4.485 6 H 0.097 0.903 7 C -0.194 4.194 8 N -0.496 5.496 9 Si 0.808 3.192 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.206 1.206 13 C 0.283 3.717 14 O -0.506 6.506 15 C -0.186 4.186 16 C 0.013 3.987 17 C -0.183 4.183 18 C -0.243 4.243 19 Br 0.092 6.908 20 C 0.011 3.989 21 N -0.225 5.225 22 C 0.167 3.833 23 O -0.301 6.301 24 H 0.258 0.742 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.228 0.772 32 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.795 -16.680 -3.126 17.199 hybrid contribution 0.163 2.001 -0.466 2.061 sum 2.958 -14.679 -3.592 15.399 Atomic orbital electron populations 1.25247 0.96359 1.03728 1.00155 1.23335 0.94863 0.97648 0.99832 1.18241 0.85179 0.96559 0.88851 1.43735 1.54500 1.08808 1.07098 1.19538 1.31104 0.84325 1.13541 0.90343 1.25993 0.95059 1.01992 0.96311 1.70130 1.17592 1.39373 1.22539 0.85135 0.78905 0.77321 0.77824 1.18860 1.19665 1.20607 1.17811 0.84519 0.86005 0.83347 1.90608 1.53178 1.73721 1.33090 1.20989 0.95557 0.95358 1.06701 1.20442 0.96730 0.90672 0.90873 1.21122 0.89874 1.03338 1.03985 1.22846 0.97087 0.93282 1.11106 1.96700 1.55776 1.45508 1.92821 1.23322 0.86219 0.99866 0.89449 1.67397 1.37982 1.00419 1.16732 1.19286 0.86255 0.86670 0.91116 1.84657 1.51809 1.55722 1.37956 0.74245 0.88267 0.90146 0.91368 0.88749 0.86958 0.91755 0.77193 0.73121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.52 17.18 74.32 1.28 -7.24 16 2 C -0.16 -6.41 10.15 31.12 0.32 -6.09 16 3 C 0.23 10.00 4.91 84.57 0.42 10.42 16 4 N -0.43 -21.20 2.59 -649.16 -1.68 -22.88 16 5 C -0.36 -19.46 9.29 84.09 0.78 -18.68 16 6 H 0.08 4.62 7.41 -2.91 -0.02 4.60 16 7 C 0.01 0.59 4.82 84.95 0.41 1.00 16 8 N -0.86 -42.34 9.55 21.68 0.21 -42.13 16 9 Si 0.98 40.07 29.61 68.60 2.03 42.11 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 11 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.49 24.97 5.18 86.66 0.45 25.42 16 14 O -0.62 -36.80 16.76 -4.12 -0.07 -36.86 16 15 C -0.18 -7.35 3.92 -19.91 -0.08 -7.43 16 16 C 0.02 0.74 5.52 -19.39 -0.11 0.63 16 17 C -0.13 -3.68 9.25 71.24 0.66 -3.02 16 18 C -0.16 -4.21 6.23 22.36 0.14 -4.07 16 19 Br 0.01 0.14 31.95 -20.37 -0.65 -0.51 16 20 C 0.17 4.39 10.92 84.73 0.93 5.32 16 21 N -0.51 -16.93 10.37 -307.87 -3.19 -20.12 16 22 C 0.34 13.77 7.34 85.15 0.63 14.39 16 23 O -0.49 -21.01 13.02 -87.48 -1.14 -22.15 16 24 H 0.24 6.45 7.80 -4.41 -0.03 6.42 16 25 H 0.10 4.40 6.60 -2.39 -0.02 4.39 16 26 H 0.08 3.00 6.76 -2.38 -0.02 2.99 16 27 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.11 2.49 6.78 -2.39 -0.02 2.48 16 30 H 0.06 2.17 7.19 -2.39 -0.02 2.15 16 31 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.41 15.68 5.86 -74.05 -0.43 15.24 16 Total: -1.00 -68.06 302.78 2.07 -65.99 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.75 Total: 25.91 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.81 Total: 10.65 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -4.67 Total: -85.14 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -1.21 Total: -59.01 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.65 Total: -0.51 kcal Total: -68.06 2.07 -65.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.059 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds