Wall clock time and date at job start Tue Mar 31 2020 20:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86793 * 120.00567 * 2 1 4 4 H 1.48506 * 109.47151 * 85.12884 * 3 2 1 5 5 H 1.48502 * 109.47571 * 205.13215 * 3 2 1 6 6 H 1.48504 * 109.47143 * 325.13333 * 3 2 1 7 7 C 1.40316 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99894 * 189.86334 * 7 2 1 9 9 C 1.40543 * 119.99604 * 9.86168 * 7 2 1 10 10 C 1.44187 * 123.71395 * 23.50876 * 9 7 2 11 11 C 1.32764 * 114.42575 * 179.97438 * 10 9 7 12 12 S 1.75470 * 111.36767 * 359.97438 * 11 10 9 13 13 C 1.39546 * 123.71214 * 203.20896 * 9 7 2 14 14 C 1.46233 * 125.22876 * 0.02562 * 13 9 7 15 15 O 1.21765 * 120.00163 * 359.97438 * 14 13 9 16 16 N 1.34779 * 120.00329 * 179.97438 * 14 13 9 17 17 N 1.40092 * 120.00356 * 179.97438 * 16 14 13 18 18 C 1.34780 * 119.99940 * 179.97438 * 17 16 14 19 19 O 1.21512 * 119.99846 * 179.97438 * 18 17 16 20 20 O 1.34630 * 120.00262 * 0.02562 * 18 17 16 21 21 C 1.45193 * 117.00304 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47330 * 179.97438 * 21 20 18 23 23 F 1.39903 * 109.46862 * 60.00279 * 22 21 20 24 24 F 1.39897 * 109.47091 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.46959 * 300.00359 * 22 21 20 26 26 H 0.97001 * 119.99096 * 359.97438 * 1 2 3 27 27 H 1.08001 * 122.78805 * 359.97438 * 10 9 7 28 28 H 1.08004 * 124.31457 * 179.97438 * 11 10 9 29 29 H 0.96997 * 119.99156 * 359.97438 * 16 14 13 30 30 H 0.97001 * 119.99941 * 0.02562 * 17 16 14 31 31 H 1.08994 * 109.47342 * 300.00299 * 21 20 18 32 32 H 1.09004 * 109.46977 * 60.00190 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3851 2.1057 1.3951 5 1 3.5858 1.4125 -0.5946 6 1 1.4933 2.6207 -0.8004 7 6 2.0079 -1.2152 -0.0005 8 1 3.0759 -1.2222 0.1597 9 6 1.3207 -2.4232 -0.2096 10 6 0.0549 -2.5158 -0.8938 11 6 -0.4293 -3.7483 -0.9882 12 16 0.6427 -4.9157 -0.2352 13 6 1.7911 -3.6658 0.2171 14 6 3.0462 -3.8923 0.9326 15 8 3.7728 -2.9525 1.1998 16 7 3.3987 -5.1412 1.2963 17 7 4.6012 -5.3583 1.9814 18 6 4.9534 -6.6073 2.3455 19 8 5.9967 -6.7956 2.9393 20 8 4.1498 -7.6464 2.0505 21 6 4.5927 -8.9630 2.4729 22 6 3.5574 -10.0084 2.0532 23 9 3.4128 -9.9891 0.6618 24 9 3.9839 -11.2769 2.4607 25 9 2.3285 -9.7149 2.6539 26 1 -0.4849 0.8401 0.0004 27 1 -0.4568 -1.6540 -1.2962 28 1 -1.3639 -4.0003 -1.4672 29 1 2.8196 -5.8898 1.0838 30 1 5.1801 -4.6096 2.1942 31 1 5.5504 -9.1915 2.0053 32 1 4.7050 -8.9781 3.5570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869281229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:00 Heat of formation + Delta-G solvation = -212.317226 kcal Electronic energy + Delta-G solvation = -26254.547003 eV Core-core repulsion = 21507.253210 eV Total energy + Delta-G solvation = -4747.293793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.41786 -47.98373 -47.84815 -40.78577 -38.66423 -36.91590 -36.31407 -35.06054 -33.23135 -31.12807 -30.29352 -28.95926 -26.21709 -24.04164 -22.64050 -22.22808 -20.77628 -19.51678 -18.94846 -18.90055 -18.65707 -18.11890 -17.71436 -16.85077 -16.55702 -16.23454 -15.65143 -15.36042 -14.84387 -14.79432 -14.35063 -14.26791 -14.23454 -14.01989 -14.01795 -13.87762 -13.67757 -13.56534 -12.61219 -12.43611 -12.19443 -12.04117 -11.61167 -11.39668 -11.33080 -11.24179 -11.01937 -10.89220 -10.54421 -10.31657 -9.78047 -9.39863 -8.85381 -8.07895 -7.64477 -7.27928 -7.21343 -4.71407 1.45214 1.97553 2.27035 2.51596 2.73263 2.86858 2.91143 2.98936 3.02373 3.34654 3.48126 3.62256 3.64275 3.72610 3.94705 4.16987 4.56639 4.59659 5.03766 5.08368 5.77280 5.93774 6.11581 6.63453 6.68016 7.00082 7.05589 7.25155 7.30715 7.50034 8.02606 8.11037 8.21041 8.40067 8.53535 9.23947 9.68403 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003024 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.825405 B = 9258.298184 C =10527.993367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.066 3.934 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.253 1.253 6 H -0.272 1.272 7 C -0.368 4.368 8 H 0.114 0.886 9 C 0.146 3.854 10 C -0.100 4.100 11 C -0.197 4.197 12 S -0.047 6.047 13 C -0.430 4.430 14 C 0.603 3.397 15 O -0.560 6.560 16 N -0.549 5.549 17 N -0.475 5.475 18 C 0.660 3.340 19 O -0.567 6.567 20 O -0.357 6.357 21 C 0.043 3.957 22 C 0.464 3.536 23 F -0.171 7.171 24 F -0.171 7.171 25 F -0.171 7.171 26 H 0.291 0.709 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.422 0.578 30 H 0.454 0.546 31 H 0.120 0.880 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -11.947 1.621 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.157 4.157 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.177 1.177 6 H -0.197 1.197 7 C -0.398 4.398 8 H 0.132 0.868 9 C 0.134 3.866 10 C -0.133 4.133 11 C -0.331 4.331 12 S 0.207 5.793 13 C -0.550 4.550 14 C 0.402 3.598 15 O -0.442 6.442 16 N -0.304 5.304 17 N -0.231 5.231 18 C 0.410 3.590 19 O -0.454 6.454 20 O -0.271 6.271 21 C -0.034 4.034 22 C 0.410 3.590 23 F -0.152 7.152 24 F -0.152 7.152 25 F -0.152 7.152 26 H 0.102 0.898 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.263 0.737 30 H 0.304 0.696 31 H 0.138 0.862 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.250 -12.966 2.159 13.540 hybrid contribution -0.071 1.807 -0.186 1.818 sum 3.179 -11.159 1.973 11.770 Atomic orbital electron populations 1.69665 1.08172 1.30774 1.30507 1.26445 0.95004 1.02846 0.91419 0.85938 0.80740 0.78526 0.79719 1.18852 1.17666 1.19713 1.20149 0.97882 0.88842 1.32952 0.86818 1.17883 0.89539 0.91458 0.87693 1.21699 0.96222 0.96203 0.99138 1.24976 1.03311 0.96799 1.08019 1.82854 1.17836 1.13464 1.65120 1.22068 1.04135 0.96108 1.32695 1.17016 0.85257 0.79430 0.78086 1.90691 1.53841 1.40873 1.58748 1.45348 1.13339 1.11331 1.60417 1.43593 1.17089 1.05506 1.56934 1.17490 0.81675 0.80673 0.79118 1.91101 1.24665 1.83014 1.46595 1.86140 1.49726 1.14979 1.76243 1.23913 0.96553 0.78547 1.04367 1.19983 0.81846 0.81464 0.75716 1.93261 1.96009 1.96441 1.29490 1.93230 1.89853 1.41715 1.90433 1.93261 1.45715 1.93038 1.83173 0.89761 0.83523 0.84212 0.73654 0.69645 0.86212 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.36 10.81 55.57 0.60 -16.76 16 2 C 0.07 1.51 5.39 -17.28 -0.09 1.41 16 3 Si 0.93 17.36 29.57 -169.99 -5.03 12.33 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.25 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.37 -9.27 8.52 -37.93 -0.32 -9.59 16 8 H 0.11 2.99 6.03 -52.49 -0.32 2.67 16 9 C 0.15 3.63 5.68 -106.21 -0.60 3.03 16 10 C -0.10 -2.28 9.04 -39.12 -0.35 -2.63 16 11 C -0.20 -4.00 11.07 28.86 0.32 -3.68 16 12 S -0.05 -0.95 22.25 -107.50 -2.39 -3.34 16 13 C -0.43 -10.16 6.51 -35.88 -0.23 -10.40 16 14 C 0.60 13.73 7.88 -13.05 -0.10 13.63 16 15 O -0.56 -13.98 14.28 5.13 0.07 -13.91 16 16 N -0.55 -10.26 6.27 30.17 0.19 -10.07 16 17 N -0.47 -7.88 6.26 27.59 0.17 -7.71 16 18 C 0.66 10.00 8.81 54.06 0.48 10.47 16 19 O -0.57 -9.21 16.97 -19.28 -0.33 -9.54 16 20 O -0.36 -4.71 9.19 -40.30 -0.37 -5.08 16 21 C 0.04 0.41 5.43 37.16 0.20 0.61 16 22 C 0.46 4.52 3.32 37.16 0.12 4.65 16 23 F -0.17 -1.91 17.27 2.25 0.04 -1.87 16 24 F -0.17 -1.52 17.32 2.25 0.04 -1.48 16 25 F -0.17 -1.93 17.26 2.25 0.04 -1.89 16 26 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 27 H 0.15 3.30 6.40 -52.49 -0.34 2.97 16 28 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.42 7.39 7.03 -182.61 -1.28 6.11 16 30 H 0.45 7.45 8.10 -182.60 -1.48 5.98 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -27.64 320.61 -6.54 -34.17 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.82 Total: 12.81 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.59 Total: 7.49 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.96 Total: -34.53 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.62 Total: -28.52 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.12 Total: -5.24 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.39 Total: -3.34 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.64 -6.54 -34.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869281229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.143 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds