Wall clock time and date at job start Tue Mar 31 2020 20:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86793 * 120.00567 * 2 1 4 4 H 1.48506 * 109.47151 * 85.12884 * 3 2 1 5 5 H 1.48502 * 109.47571 * 205.13215 * 3 2 1 6 6 H 1.48504 * 109.47143 * 325.13333 * 3 2 1 7 7 C 1.40316 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99894 * 189.86334 * 7 2 1 9 9 C 1.40543 * 119.99604 * 9.86168 * 7 2 1 10 10 C 1.44187 * 123.71395 * 23.50876 * 9 7 2 11 11 C 1.32764 * 114.42575 * 179.97438 * 10 9 7 12 12 S 1.75470 * 111.36767 * 359.97438 * 11 10 9 13 13 C 1.39546 * 123.71214 * 203.20896 * 9 7 2 14 14 C 1.46233 * 125.22876 * 0.02562 * 13 9 7 15 15 O 1.21765 * 120.00163 * 359.97438 * 14 13 9 16 16 N 1.34779 * 120.00329 * 179.97438 * 14 13 9 17 17 N 1.40092 * 120.00356 * 179.97438 * 16 14 13 18 18 C 1.34780 * 119.99940 * 179.97438 * 17 16 14 19 19 O 1.21512 * 119.99846 * 179.97438 * 18 17 16 20 20 O 1.34630 * 120.00262 * 0.02562 * 18 17 16 21 21 C 1.45193 * 117.00304 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47330 * 179.97438 * 21 20 18 23 23 F 1.39903 * 109.46862 * 60.00279 * 22 21 20 24 24 F 1.39897 * 109.47091 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.46959 * 300.00359 * 22 21 20 26 26 H 0.97001 * 119.99096 * 359.97438 * 1 2 3 27 27 H 1.08001 * 122.78805 * 359.97438 * 10 9 7 28 28 H 1.08004 * 124.31457 * 179.97438 * 11 10 9 29 29 H 0.96997 * 119.99156 * 359.97438 * 16 14 13 30 30 H 0.97001 * 119.99941 * 0.02562 * 17 16 14 31 31 H 1.08994 * 109.47342 * 300.00299 * 21 20 18 32 32 H 1.09004 * 109.46977 * 60.00190 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3851 2.1057 1.3951 5 1 3.5858 1.4125 -0.5946 6 1 1.4933 2.6207 -0.8004 7 6 2.0079 -1.2152 -0.0005 8 1 3.0759 -1.2222 0.1597 9 6 1.3207 -2.4232 -0.2096 10 6 0.0549 -2.5158 -0.8938 11 6 -0.4293 -3.7483 -0.9882 12 16 0.6427 -4.9157 -0.2352 13 6 1.7911 -3.6658 0.2171 14 6 3.0462 -3.8923 0.9326 15 8 3.7728 -2.9525 1.1998 16 7 3.3987 -5.1412 1.2963 17 7 4.6012 -5.3583 1.9814 18 6 4.9534 -6.6073 2.3455 19 8 5.9967 -6.7956 2.9393 20 8 4.1498 -7.6464 2.0505 21 6 4.5927 -8.9630 2.4729 22 6 3.5574 -10.0084 2.0532 23 9 3.4128 -9.9891 0.6618 24 9 3.9839 -11.2769 2.4607 25 9 2.3285 -9.7149 2.6539 26 1 -0.4849 0.8401 0.0004 27 1 -0.4568 -1.6540 -1.2962 28 1 -1.3639 -4.0003 -1.4672 29 1 2.8196 -5.8898 1.0838 30 1 5.1801 -4.6096 2.1942 31 1 5.5504 -9.1915 2.0053 32 1 4.7050 -8.9781 3.5570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869281229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:59 Heat of formation + Delta-G solvation = -230.386849 kcal Electronic energy + Delta-G solvation = -26255.330561 eV Core-core repulsion = 21507.253210 eV Total energy + Delta-G solvation = -4748.077351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.22582 -48.76825 -48.69925 -41.99973 -40.30441 -38.19846 -37.86973 -36.64185 -34.94782 -32.54545 -31.31999 -30.62849 -27.94080 -24.96565 -24.26509 -23.38704 -22.42556 -20.86700 -20.49882 -19.77112 -19.69705 -19.24827 -19.00957 -18.08624 -17.95245 -17.43465 -17.28533 -16.92224 -15.91496 -15.89543 -15.61177 -15.56871 -15.44023 -15.13377 -14.87679 -14.84305 -14.78712 -14.74063 -14.25864 -14.12452 -13.74975 -13.23139 -13.07427 -12.98353 -12.82447 -12.50100 -12.29442 -12.28462 -12.10464 -12.02503 -11.43281 -11.08787 -10.65207 -9.65474 -9.32866 -8.95760 -8.89164 -6.50019 0.25717 0.34185 1.09927 1.27578 1.35290 1.36676 1.38398 1.51548 1.72568 1.76761 1.95035 2.17169 2.42051 2.55690 2.85287 3.08369 3.27566 3.67065 3.87865 3.95128 4.34491 4.52053 4.69135 4.97087 5.21619 5.25499 5.38780 5.56963 5.78020 5.80943 6.36317 6.43141 6.60771 6.77481 6.80130 7.54564 8.03013 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003024 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.825405 B = 9258.298184 C =10527.993367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.250 1.250 7 C -0.406 4.406 8 H 0.091 0.909 9 C 0.120 3.880 10 C -0.128 4.128 11 C -0.183 4.183 12 S 0.003 5.997 13 C -0.463 4.463 14 C 0.599 3.401 15 O -0.590 6.590 16 N -0.536 5.536 17 N -0.479 5.479 18 C 0.671 3.329 19 O -0.573 6.573 20 O -0.363 6.363 21 C 0.037 3.963 22 C 0.470 3.530 23 F -0.180 7.180 24 F -0.163 7.163 25 F -0.180 7.180 26 H 0.303 0.697 27 H 0.144 0.856 28 H 0.178 0.822 29 H 0.429 0.571 30 H 0.454 0.546 31 H 0.141 0.859 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -12.928 1.620 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.174 1.174 7 C -0.436 4.436 8 H 0.109 0.891 9 C 0.108 3.892 10 C -0.161 4.161 11 C -0.317 4.317 12 S 0.258 5.742 13 C -0.583 4.583 14 C 0.397 3.603 15 O -0.474 6.474 16 N -0.289 5.289 17 N -0.237 5.237 18 C 0.423 3.577 19 O -0.461 6.461 20 O -0.277 6.277 21 C -0.039 4.039 22 C 0.416 3.584 23 F -0.161 7.161 24 F -0.144 7.144 25 F -0.162 7.162 26 H 0.115 0.885 27 H 0.161 0.839 28 H 0.195 0.805 29 H 0.272 0.728 30 H 0.302 0.698 31 H 0.159 0.841 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.810 -14.027 2.161 14.468 hybrid contribution 0.054 1.879 -0.146 1.886 sum 2.863 -12.148 2.014 12.642 Atomic orbital electron populations 1.69642 1.08844 1.32234 1.30021 1.27072 0.95786 1.04930 0.90728 0.85050 0.79141 0.75126 0.79706 1.18873 1.18751 1.17357 1.20159 0.97204 0.90594 1.35653 0.89109 1.18311 0.90795 0.92025 0.88050 1.21611 0.96296 0.97242 1.00918 1.25454 1.04079 0.95998 1.06212 1.82534 1.16079 1.11464 1.64088 1.22492 1.05394 0.97477 1.32910 1.17041 0.85078 0.80131 0.78034 1.90662 1.54707 1.42154 1.59865 1.44899 1.14082 1.10265 1.59703 1.43649 1.16289 1.06402 1.57352 1.17330 0.81461 0.80533 0.78397 1.91100 1.25072 1.83095 1.46821 1.86115 1.49503 1.15914 1.76150 1.24288 0.97171 0.76472 1.05949 1.19962 0.81474 0.81798 0.75166 1.93246 1.96045 1.96514 1.30318 1.93249 1.89703 1.41192 1.90298 1.93245 1.46477 1.93152 1.83290 0.88515 0.83871 0.80502 0.72822 0.69770 0.84115 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.58 10.81 21.89 0.24 -35.35 16 2 C 0.04 1.68 5.39 85.38 0.46 2.14 16 3 Si 0.99 35.87 29.57 68.60 2.03 37.89 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 7 C -0.41 -21.22 8.52 23.34 0.20 -21.02 16 8 H 0.09 5.04 6.03 -2.91 -0.02 5.02 16 9 C 0.12 6.10 5.68 -20.89 -0.12 5.99 16 10 C -0.13 -5.83 9.04 22.61 0.20 -5.62 16 11 C -0.18 -7.12 11.07 66.64 0.74 -6.38 16 12 S 0.00 0.13 22.25 -56.49 -1.26 -1.13 16 13 C -0.46 -22.09 6.51 24.66 0.16 -21.93 16 14 C 0.60 27.74 7.88 86.32 0.68 28.42 16 15 O -0.59 -30.51 14.28 -4.56 -0.07 -30.57 16 16 N -0.54 -19.87 6.27 -176.66 -1.11 -20.97 16 17 N -0.48 -15.70 6.26 -297.02 -1.86 -17.56 16 18 C 0.67 19.39 8.81 129.79 1.14 20.54 16 19 O -0.57 -17.65 16.97 19.80 0.34 -17.31 16 20 O -0.36 -8.91 9.19 -55.40 -0.51 -9.42 16 21 C 0.04 0.61 5.43 71.98 0.39 1.00 16 22 C 0.47 8.24 3.32 71.98 0.24 8.48 16 23 F -0.18 -3.73 17.27 44.97 0.78 -2.96 16 24 F -0.16 -2.55 17.32 44.97 0.78 -1.77 16 25 F -0.18 -3.77 17.26 44.97 0.78 -3.00 16 26 H 0.30 12.05 8.29 -92.71 -0.77 11.28 16 27 H 0.14 6.49 6.40 -2.91 -0.02 6.47 16 28 H 0.18 5.43 8.06 -2.91 -0.02 5.40 16 29 H 0.43 14.60 7.03 -213.33 -1.50 13.10 16 30 H 0.45 14.97 8.10 -213.32 -1.73 13.24 16 31 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -60.07 320.61 2.26 -57.81 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -1.97 Total: 32.73 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.10 Total: 11.61 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.73 Total: -73.89 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.24 Total: -57.30 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 2.33 Total: -7.73 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.26 Total: -1.13 kcal Total: -60.07 2.26 -57.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869281229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.576 kcal (2) G-P(sol) polarization free energy of solvation -60.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds