Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47194 * 2 1 4 4 C 1.50700 * 109.47002 * 120.00775 * 2 1 3 5 5 H 1.07995 * 120.00011 * 119.99816 * 4 2 1 6 6 C 1.37873 * 119.99732 * 299.99196 * 4 2 1 7 7 N 1.31514 * 120.00564 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47031 * 90.00017 * 8 6 4 10 10 H 1.48503 * 109.47288 * 210.00331 * 8 6 4 11 11 H 1.48502 * 109.47049 * 330.00508 * 8 6 4 12 12 C 1.50707 * 109.46503 * 240.00432 * 2 1 3 13 13 O 1.21293 * 119.99877 * 240.00000 * 12 2 1 14 14 N 1.34777 * 119.99823 * 60.00265 * 12 2 1 15 15 C 1.39970 * 119.99750 * 179.97438 * 14 12 2 16 16 N 1.30754 * 126.17824 * 0.13116 * 15 14 12 17 17 N 1.39922 * 110.04800 * 180.30164 * 16 15 14 18 18 H 0.97004 * 125.40453 * 179.73122 * 17 16 15 19 19 C 1.36924 * 109.19768 * 359.72522 * 17 16 15 20 20 C 1.39132 * 134.68733 * 179.97438 * 19 17 16 21 21 N 1.31604 * 120.22633 * 180.02562 * 20 19 17 22 22 C 1.32414 * 122.54492 * 0.02562 * 21 20 19 23 23 Br 1.89096 * 119.29889 * 179.97438 * 22 21 20 24 24 C 1.36645 * 121.39866 * 359.97438 * 22 21 20 25 25 C 1.39945 * 118.72866 * 0.02562 * 24 22 21 26 26 H 1.09005 * 109.46629 * 299.99601 * 1 2 3 27 27 H 1.08999 * 109.47441 * 59.99283 * 1 2 3 28 28 H 1.08996 * 109.47582 * 179.97438 * 1 2 3 29 29 H 0.96996 * 120.00427 * 179.97438 * 7 6 4 30 30 H 0.96994 * 120.00289 * 359.97438 * 14 12 2 31 31 H 1.08002 * 119.88415 * 0.02562 * 20 19 17 32 32 H 1.08001 * 120.63886 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9430 0.8295 2.6035 8 14 2.3225 -1.1199 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3445 -0.9494 5.1122 11 1 2.4880 -2.5657 3.7119 12 6 2.0322 -0.7104 -1.2306 13 8 2.7295 -1.6966 -1.1194 14 7 1.7066 -0.2497 -2.4546 15 6 2.1734 -0.9092 -3.5976 16 7 2.9266 -1.9778 -3.6186 17 7 3.1980 -2.3475 -4.9405 18 1 3.7389 -3.1054 -5.2124 19 6 2.5789 -1.4697 -5.7896 20 6 2.4958 -1.3397 -7.1724 21 7 1.8007 -0.3572 -7.7048 22 6 1.1585 0.5396 -6.9723 23 35 0.1874 1.9144 -7.8341 24 6 1.1827 0.4928 -5.6069 25 6 1.9055 -0.5295 -4.9816 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7084 1.1606 3.4845 30 1 1.1487 0.5387 -2.5435 31 1 3.0035 -2.0475 -7.8109 32 1 0.6547 1.2309 -5.0214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869770149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = 45.982849 kcal Electronic energy + Delta-G solvation = -20231.966689 eV Core-core repulsion = 16853.551726 eV Total energy + Delta-G solvation = -3378.414962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.86501 -40.82730 -39.36003 -36.09832 -35.83127 -33.65567 -32.68421 -32.58236 -31.42868 -29.70045 -27.22101 -25.68571 -25.04447 -23.92764 -22.51671 -21.08244 -19.60840 -18.54372 -18.37240 -17.69848 -17.29177 -17.13329 -16.76885 -16.40135 -15.84601 -15.38712 -15.22793 -14.96873 -14.67954 -14.41046 -13.56860 -13.14868 -12.99118 -12.78729 -12.62381 -12.57654 -12.21793 -12.13618 -12.04087 -11.68991 -11.42621 -11.07299 -10.98919 -10.97074 -10.69291 -10.41896 -10.22813 -8.97750 -8.16786 -6.26899 -0.46475 -0.08947 0.35119 1.02716 1.25159 1.41264 1.43019 1.54097 1.97720 2.01733 2.44592 2.46967 2.99009 3.13830 3.40842 3.49846 3.60946 3.72866 4.21936 4.34312 4.55105 4.62307 4.73539 4.91051 4.98733 5.13111 5.39805 5.47327 5.73529 5.80169 5.99586 6.19214 6.27562 6.53935 6.65626 6.81185 7.23686 7.42522 8.88919 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002806 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.979186 B = 9977.943157 C =11193.757910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.049 0.951 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.517 3.483 13 O -0.531 6.531 14 N -0.628 5.628 15 C 0.319 3.681 16 N -0.269 5.269 17 N -0.472 5.472 18 H 0.461 0.539 19 C 0.100 3.900 20 C 0.131 3.869 21 N -0.435 5.435 22 C 0.048 3.952 23 Br 0.001 6.999 24 C -0.042 4.042 25 C -0.162 4.162 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.266 0.734 30 H 0.436 0.564 31 H 0.213 0.787 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 2.245 -23.909 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.571 4.571 5 H 0.067 0.933 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.307 3.693 13 O -0.403 6.403 14 N -0.282 5.282 15 C 0.052 3.948 16 N -0.095 5.095 17 N -0.191 5.191 18 H 0.310 0.690 19 C -0.023 4.023 20 C -0.043 4.043 21 N -0.146 5.146 22 C -0.160 4.160 23 Br 0.085 6.915 24 C -0.067 4.067 25 C -0.179 4.179 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.277 0.723 31 H 0.230 0.770 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.391 1.481 -24.067 24.152 hybrid contribution 0.262 -0.295 1.572 1.620 sum -1.129 1.186 -22.495 22.554 Atomic orbital electron populations 1.21626 0.94445 0.99770 1.02392 1.18842 0.95678 0.96303 0.87992 0.92729 1.21245 1.31951 1.12908 0.90955 0.93279 1.25509 0.95094 0.95695 1.01206 1.69918 1.36823 1.23362 1.24457 0.85634 0.78400 0.78759 0.79326 1.20090 1.19947 1.20540 1.22160 0.78430 0.84198 0.84540 1.90631 1.36711 1.26789 1.86135 1.43374 1.52007 1.31197 1.01621 1.20484 0.95496 0.92390 0.86442 1.77445 1.19346 1.14742 0.97947 1.45888 1.45851 1.27404 0.99927 0.68951 1.20248 0.95457 0.91827 0.94726 1.22568 0.97500 0.96602 0.87657 1.67366 1.05801 1.01800 1.39590 1.22033 1.04376 0.98858 0.90743 1.96770 1.70601 1.43338 1.80792 1.21270 0.95582 0.96372 0.93444 1.19666 1.06968 1.01164 0.90081 0.90619 0.92266 0.95761 0.92458 0.72340 0.77047 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.87 71.98 0.64 -4.61 16 2 C 0.03 1.57 2.64 -12.28 -0.03 1.53 16 3 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.53 -29.68 8.37 25.60 0.21 -29.47 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -48.84 11.32 21.45 0.24 -48.60 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.52 22.78 7.12 87.66 0.62 23.41 16 13 O -0.53 -27.64 14.19 -3.07 -0.04 -27.69 16 14 N -0.63 -20.81 5.33 -303.28 -1.62 -22.42 16 15 C 0.32 10.23 8.05 135.01 1.09 11.32 16 16 N -0.27 -9.33 10.80 -50.94 -0.55 -9.88 16 17 N -0.47 -10.89 7.36 -51.53 -0.38 -11.27 16 18 H 0.46 7.01 8.96 -213.43 -1.91 5.09 16 19 C 0.10 2.12 7.38 39.26 0.29 2.41 16 20 C 0.13 2.12 11.26 84.94 0.96 3.08 16 21 N -0.44 -8.77 10.27 -191.16 -1.96 -10.73 16 22 C 0.05 0.98 7.12 84.23 0.60 1.58 16 23 Br 0.00 0.02 33.84 -20.37 -0.69 -0.67 16 24 C -0.04 -0.87 9.81 22.31 0.22 -0.65 16 25 C -0.16 -4.01 6.44 -20.16 -0.13 -4.14 16 26 H 0.08 3.57 6.07 -2.38 -0.01 3.56 16 27 H 0.06 1.91 7.56 -2.39 -0.02 1.89 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.44 10.91 8.24 -92.71 -0.76 10.15 16 31 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.88 304.62 0.47 -70.41 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.46 Total: 8.73 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.91 Total: 6.24 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -4.27 Total: -102.89 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal Total: -70.88 0.47 -70.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869770149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.388 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds