Wall clock time and date at job start Tue Mar 31 2020 20:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48500 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47482 * 300.00387 * 3 2 1 6 6 H 1.48504 * 109.46866 * 60.00273 * 3 2 1 7 7 C 1.37878 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46960 * 180.02562 * 10 9 7 12 12 O 1.21300 * 120.00231 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99911 * 180.02562 * 11 10 9 14 14 C 1.39970 * 120.00174 * 179.97438 * 13 11 10 15 15 N 1.30763 * 126.17753 * 0.33046 * 14 13 11 16 16 N 1.39922 * 110.04843 * 180.17121 * 15 14 13 17 17 H 0.97001 * 125.40445 * 179.80535 * 16 15 14 18 18 C 1.36931 * 109.19386 * 359.52946 * 16 15 14 19 19 C 1.39133 * 134.68052 * 180.28790 * 18 16 15 20 20 N 1.31599 * 120.23015 * 179.97438 * 19 18 16 21 21 C 1.32411 * 122.53812 * 0.02928 * 20 19 18 22 22 Br 1.89098 * 119.29847 * 179.97438 * 21 20 19 23 23 C 1.36647 * 121.40258 * 359.97438 * 21 20 19 24 24 C 1.39947 * 118.73016 * 0.02562 * 23 21 20 25 25 H 0.97005 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46706 * 60.00441 * 9 7 2 27 27 H 1.08993 * 109.47148 * 300.00961 * 9 7 2 28 28 H 1.09002 * 109.46730 * 60.00201 * 10 9 7 29 29 H 1.08999 * 109.46864 * 300.00227 * 10 9 7 30 30 H 0.96994 * 120.00005 * 359.97438 * 13 11 10 31 31 H 1.08004 * 119.88118 * 359.97438 * 19 18 16 32 32 H 1.08006 * 120.63924 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2787 -4.9672 -0.0021 13 7 2.1656 -6.1344 -0.0008 14 6 1.4658 -7.3465 -0.0008 15 7 0.1658 -7.4873 -0.0073 16 7 -0.1697 -8.8457 -0.0010 17 1 -1.0720 -9.2017 -0.0013 18 6 0.9779 -9.5928 -0.0007 19 6 1.2580 -10.9556 -0.0008 20 7 2.5051 -11.3757 -0.0008 21 6 3.5364 -10.5451 -0.0002 22 35 5.2915 -11.2491 0.0004 23 6 3.3593 -9.1902 0.0000 24 6 2.0553 -8.6822 0.0001 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 3.1356 -6.1344 -0.0004 31 1 0.4490 -11.6712 -0.0008 32 1 4.2095 -8.5240 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869771057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:19 Heat of formation + Delta-G solvation = 63.113048 kcal Electronic energy + Delta-G solvation = -19665.997511 eV Core-core repulsion = 16288.325370 eV Total energy + Delta-G solvation = -3377.672141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01403 -39.62681 -38.47278 -35.01925 -33.57904 -32.83402 -31.84935 -31.36090 -30.51910 -28.95098 -26.03944 -24.62167 -23.36740 -22.69635 -20.79154 -19.95377 -18.74678 -17.64523 -16.85299 -16.74948 -16.24326 -15.90240 -15.70065 -15.00892 -14.72068 -14.52187 -14.32716 -13.81379 -13.50809 -12.69207 -12.46047 -12.25614 -11.56631 -11.35641 -11.17252 -11.00422 -10.89704 -10.71490 -10.64215 -10.25385 -10.14519 -10.08328 -9.79935 -9.41190 -9.29941 -9.15750 -8.39415 -8.13724 -6.02604 -4.07658 0.29590 0.68313 1.06709 2.03960 2.11949 2.92308 3.05340 3.26862 3.29096 3.36614 3.39404 3.75451 4.12889 4.25893 4.36867 4.42722 4.56171 5.01756 5.15942 5.24696 5.32879 5.46499 5.82855 6.03798 6.04086 6.42540 6.63225 6.80422 7.03420 7.26991 7.59774 7.66446 7.74218 7.97876 8.26020 8.42853 9.00273 9.56608 11.08301 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.002322 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.534384 B =12057.488395 C =13374.574975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.035 3.965 10 C -0.124 4.124 11 C 0.501 3.499 12 O -0.477 6.477 13 N -0.644 5.644 14 C 0.332 3.668 15 N -0.219 5.219 16 N -0.486 5.486 17 H 0.448 0.552 18 C 0.100 3.900 19 C 0.115 3.885 20 N -0.421 5.421 21 C 0.057 3.943 22 Br -0.009 7.009 23 C -0.043 4.043 24 C -0.149 4.149 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.421 0.579 31 H 0.173 0.827 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -26.406 0.009 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.290 3.710 12 O -0.344 6.344 13 N -0.297 5.297 14 C 0.065 3.935 15 N -0.044 5.044 16 N -0.202 5.202 17 H 0.295 0.705 18 C -0.023 4.023 19 C -0.059 4.059 20 N -0.131 5.131 21 C -0.152 4.152 22 Br 0.075 6.925 23 C -0.067 4.067 24 C -0.167 4.167 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.258 0.742 31 H 0.190 0.810 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.028 -26.653 0.003 27.836 hybrid contribution 0.602 1.281 0.002 1.415 sum 8.630 -25.373 0.005 26.800 Atomic orbital electron populations 1.70004 1.06090 1.26619 1.49976 1.25028 0.94834 0.99328 0.95178 0.86518 0.79999 0.83710 0.77630 1.19681 1.20991 1.20986 1.21208 0.93005 0.90793 1.51686 0.92384 1.18951 0.93134 0.89251 0.98881 1.21935 1.00906 0.90327 1.03235 1.22165 0.89229 0.84885 0.74764 1.90796 1.13888 1.86182 1.43572 1.43695 1.10412 1.01606 1.73988 1.20315 0.89483 0.85524 0.98220 1.77588 1.11561 0.92675 1.22578 1.46029 1.07013 1.01866 1.65245 0.70543 1.20013 0.88130 0.94779 0.99348 1.21949 0.93675 0.89736 1.00550 1.67278 0.98170 1.38372 1.09309 1.21845 0.92794 0.90428 1.10113 1.96773 1.10347 1.87557 1.97819 1.21085 0.96017 0.94405 0.95218 1.19618 0.93836 0.91385 1.11856 0.92911 0.95616 0.95624 0.89440 0.89448 0.74174 0.81036 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 10 C -0.12 -2.28 5.64 -27.89 -0.16 -2.44 16 11 C 0.50 9.02 7.80 -10.99 -0.09 8.93 16 12 O -0.48 -10.81 14.72 5.54 0.08 -10.73 16 13 N -0.64 -8.57 5.44 -9.79 -0.05 -8.62 16 14 C 0.33 4.65 8.05 -152.67 -1.23 3.42 16 15 N -0.22 -3.42 10.80 32.55 0.35 -3.07 16 16 N -0.49 -5.25 7.36 32.36 0.24 -5.02 16 17 H 0.45 3.24 8.96 -182.73 -1.64 1.60 16 18 C 0.10 1.02 7.38 -84.18 -0.62 0.40 16 19 C 0.12 0.98 11.26 -17.32 -0.19 0.78 16 20 N -0.42 -4.34 10.27 -11.77 -0.12 -4.47 16 21 C 0.06 0.58 7.12 -17.88 -0.13 0.45 16 22 Br -0.01 -0.08 33.84 -68.01 -2.30 -2.38 16 23 C -0.04 -0.40 9.81 -39.52 -0.39 -0.79 16 24 C -0.15 -1.69 6.44 -105.08 -0.68 -2.37 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.42 3.75 8.82 -40.82 -0.36 3.39 16 31 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -35.72 311.33 -9.48 -45.20 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.07 Total: -1.63 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -4.01 Total: -4.01 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 1.15 Total: -47.26 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.30 Total: -2.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.72 -9.48 -45.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869771057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.310 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds