Wall clock time and date at job start Tue Mar 31 2020 20:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48500 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47482 * 300.00387 * 3 2 1 6 6 H 1.48504 * 109.46866 * 60.00273 * 3 2 1 7 7 C 1.37878 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47253 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46960 * 180.02562 * 10 9 7 12 12 O 1.21300 * 120.00231 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99911 * 180.02562 * 11 10 9 14 14 C 1.39970 * 120.00174 * 179.97438 * 13 11 10 15 15 N 1.30763 * 126.17753 * 0.33046 * 14 13 11 16 16 N 1.39922 * 110.04843 * 180.17121 * 15 14 13 17 17 H 0.97001 * 125.40445 * 179.80535 * 16 15 14 18 18 C 1.36931 * 109.19386 * 359.52946 * 16 15 14 19 19 C 1.39133 * 134.68052 * 180.28790 * 18 16 15 20 20 N 1.31599 * 120.23015 * 179.97438 * 19 18 16 21 21 C 1.32411 * 122.53812 * 0.02928 * 20 19 18 22 22 Br 1.89098 * 119.29847 * 179.97438 * 21 20 19 23 23 C 1.36647 * 121.40258 * 359.97438 * 21 20 19 24 24 C 1.39947 * 118.73016 * 0.02562 * 23 21 20 25 25 H 0.97005 * 119.99935 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46706 * 60.00441 * 9 7 2 27 27 H 1.08993 * 109.47148 * 300.00961 * 9 7 2 28 28 H 1.09002 * 109.46730 * 60.00201 * 10 9 7 29 29 H 1.08999 * 109.46864 * 300.00227 * 10 9 7 30 30 H 0.96994 * 120.00005 * 359.97438 * 13 11 10 31 31 H 1.08004 * 119.88118 * 359.97438 * 19 18 16 32 32 H 1.08006 * 120.63924 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2787 -4.9672 -0.0021 13 7 2.1656 -6.1344 -0.0008 14 6 1.4658 -7.3465 -0.0008 15 7 0.1658 -7.4873 -0.0073 16 7 -0.1697 -8.8457 -0.0010 17 1 -1.0720 -9.2017 -0.0013 18 6 0.9779 -9.5928 -0.0007 19 6 1.2580 -10.9556 -0.0008 20 7 2.5051 -11.3757 -0.0008 21 6 3.5364 -10.5451 -0.0002 22 35 5.2915 -11.2491 0.0004 23 6 3.3593 -9.1902 0.0000 24 6 2.0553 -8.6822 0.0001 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8719 -3.6043 0.8895 29 1 2.8719 -3.6043 -0.8905 30 1 3.1356 -6.1344 -0.0004 31 1 0.4490 -11.6712 -0.0008 32 1 4.2095 -8.5240 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869771057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:19 Heat of formation + Delta-G solvation = 37.244051 kcal Electronic energy + Delta-G solvation = -19667.119275 eV Core-core repulsion = 16288.325370 eV Total energy + Delta-G solvation = -3378.793905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.89865 -40.91985 -39.39588 -36.24662 -35.56437 -33.69838 -33.03481 -32.64613 -31.65897 -29.77797 -27.88333 -25.51225 -24.59646 -23.85589 -22.23052 -21.24015 -19.60442 -18.97565 -18.22572 -17.78517 -17.30019 -17.08207 -17.00253 -16.44532 -16.22584 -15.40540 -15.25310 -15.04393 -14.79801 -14.22438 -14.21585 -13.27213 -13.15942 -12.87284 -12.62227 -12.44284 -12.22860 -11.92542 -11.71331 -11.65012 -11.44136 -11.27714 -11.00188 -10.99788 -10.90464 -10.56727 -10.27739 -9.01620 -8.17313 -6.30774 -0.48342 -0.10487 0.34520 0.94598 1.18612 1.44622 1.45114 1.58442 1.83660 1.92309 2.44100 2.45046 2.96070 3.16816 3.38033 3.45402 3.54872 3.70064 4.00553 4.33105 4.45279 4.54538 4.55342 4.58580 5.04965 5.11929 5.31991 5.52587 5.63065 5.82899 5.86258 6.17238 6.21558 6.49629 6.58461 6.87955 7.11060 7.39802 8.95550 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.002322 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.534384 B =12057.488395 C =13374.574975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.250 1.250 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.039 3.961 10 C -0.111 4.111 11 C 0.507 3.493 12 O -0.535 6.535 13 N -0.622 5.622 14 C 0.318 3.682 15 N -0.270 5.270 16 N -0.473 5.473 17 H 0.461 0.539 18 C 0.098 3.902 19 C 0.130 3.870 20 N -0.437 5.437 21 C 0.047 3.953 22 Br 0.001 6.999 23 C -0.040 4.040 24 C -0.158 4.158 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.443 0.557 31 H 0.210 0.790 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -27.623 0.012 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.099 0.901 9 C 0.001 3.999 10 C -0.151 4.151 11 C 0.296 3.704 12 O -0.407 6.407 13 N -0.276 5.276 14 C 0.051 3.949 15 N -0.095 5.095 16 N -0.192 5.192 17 H 0.310 0.690 18 C -0.024 4.024 19 C -0.044 4.044 20 N -0.147 5.147 21 C -0.161 4.161 22 Br 0.085 6.915 23 C -0.064 4.064 24 C -0.176 4.176 25 H 0.070 0.930 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.285 0.715 31 H 0.227 0.773 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.766 -27.928 0.005 29.931 hybrid contribution -0.242 1.488 0.001 1.508 sum 10.524 -26.440 0.006 28.457 Atomic orbital electron populations 1.70185 1.08345 1.27687 1.51690 1.26125 0.95671 1.03958 0.94783 0.85295 0.79499 0.78225 0.77356 1.17304 1.20906 1.20894 1.21744 0.94190 0.91352 1.50384 0.90117 1.18732 0.93774 0.92408 0.94938 1.21684 0.99307 0.87980 1.06117 1.21937 0.88359 0.86034 0.74048 1.90784 1.16222 1.87137 1.46509 1.43158 1.11301 1.00507 1.72640 1.20407 0.89535 0.86194 0.98763 1.77453 1.13087 0.95502 1.23463 1.45896 1.08032 1.00460 1.64784 0.68996 1.20257 0.87474 0.95428 0.99258 1.22542 0.94088 0.89476 0.98339 1.67366 0.98748 1.38686 1.09908 1.22082 0.93341 0.90749 1.09917 1.96784 1.09500 1.87455 1.97771 1.21291 0.96029 0.94637 0.94455 1.19629 0.95032 0.90069 1.12829 0.92953 0.99791 0.99792 0.86422 0.86436 0.71535 0.77299 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.29 21.45 0.28 -58.42 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.01 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.08 4.26 29.85 0.13 2.20 16 10 C -0.11 -4.01 5.64 29.85 0.17 -3.84 16 11 C 0.51 18.38 7.80 87.66 0.68 19.06 16 12 O -0.53 -25.42 14.72 -3.09 -0.05 -25.46 16 13 N -0.62 -15.89 5.44 -303.28 -1.65 -17.54 16 14 C 0.32 8.72 8.05 135.01 1.09 9.81 16 15 N -0.27 -8.52 10.80 -50.93 -0.55 -9.07 16 16 N -0.47 -9.91 7.36 -51.53 -0.38 -10.29 16 17 H 0.46 6.35 8.96 -213.43 -1.91 4.43 16 18 C 0.10 1.84 7.38 39.26 0.29 2.13 16 19 C 0.13 1.86 11.26 84.94 0.96 2.81 16 20 N -0.44 -7.91 10.27 -191.16 -1.96 -9.88 16 21 C 0.05 0.84 7.12 84.23 0.60 1.44 16 22 Br 0.00 0.02 33.84 -20.37 -0.69 -0.67 16 23 C -0.04 -0.66 9.81 22.31 0.22 -0.44 16 24 C -0.16 -3.33 6.44 -20.16 -0.13 -3.46 16 25 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 26 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 27 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 28 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.12 3.53 8.14 -2.39 -0.02 3.52 16 30 H 0.44 6.82 8.82 -92.71 -0.82 6.00 16 31 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -81.62 311.33 0.20 -81.42 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -1.53 Total: 4.04 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.70 Total: 0.57 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.26 Total: -105.20 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.05 Total: -25.46 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal Total: -81.62 0.20 -81.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869771057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.665 kcal (2) G-P(sol) polarization free energy of solvation -81.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds