Wall clock time and date at job start Tue Mar 31 2020 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47301 * 2 1 4 4 C 1.50703 * 109.46475 * 240.00195 * 2 1 3 5 5 H 1.07998 * 119.99553 * 239.99821 * 4 2 1 6 6 C 1.37873 * 120.00055 * 60.00253 * 4 2 1 7 7 N 1.31514 * 120.00086 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47304 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47195 * 119.99845 * 8 6 4 11 11 H 1.48499 * 109.47148 * 239.99669 * 8 6 4 12 12 C 1.53002 * 109.47150 * 120.00538 * 2 1 3 13 13 S 1.81400 * 109.46892 * 299.99575 * 12 2 1 14 14 O 1.42101 * 110.54626 * 68.37787 * 13 12 2 15 15 O 1.42106 * 110.54260 * 291.62471 * 13 12 2 16 16 N 1.65600 * 104.44936 * 180.02562 * 13 12 2 17 17 C 1.46503 * 120.00013 * 64.99585 * 16 13 12 18 18 C 1.50697 * 109.47023 * 165.00240 * 17 16 13 19 19 N 1.28985 * 124.90322 * 90.00190 * 18 17 16 20 20 C 1.31834 * 117.13612 * 180.02562 * 19 18 17 21 21 C 1.33751 * 114.45808 * 0.02562 * 20 19 18 22 22 Cl 1.73608 * 126.03986 * 179.97438 * 21 20 19 23 23 S 1.70978 * 124.90019 * 270.04117 * 18 17 16 24 24 H 1.09004 * 109.47017 * 299.99550 * 1 2 3 25 25 H 1.09001 * 109.47340 * 59.99545 * 1 2 3 26 26 H 1.08996 * 109.47668 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47190 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47295 * 300.00482 * 3 2 1 29 29 H 1.09000 * 109.47018 * 60.00656 * 3 2 1 30 30 H 0.97000 * 119.99797 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46578 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46932 * 59.99508 * 12 2 1 33 33 H 0.96997 * 119.99944 * 245.00200 * 16 13 12 34 34 H 1.09000 * 109.46924 * 45.00111 * 17 16 13 35 35 H 1.08996 * 109.47204 * 285.00244 * 17 16 13 36 36 H 1.08001 * 122.76653 * 179.72777 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3222 -1.1195 -4.0080 9 1 3.1480 -2.2856 -3.6040 10 1 1.1674 -1.5865 -4.8165 11 1 3.1469 -0.1858 -4.8162 12 6 2.0400 -0.7214 1.2492 13 16 1.4354 0.1337 2.7303 14 8 0.0280 -0.0184 2.8545 15 8 2.0481 1.4099 2.8544 16 7 2.0542 -0.7402 3.9935 17 6 3.5028 -0.7966 4.2052 18 6 3.7882 -1.3245 5.5876 19 7 3.9452 -2.5700 5.8841 20 6 4.1892 -2.8613 7.1465 21 6 4.2401 -1.8007 7.9598 22 17 4.5395 -1.8380 9.6695 23 16 3.9497 -0.3590 6.9894 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 0.7086 1.1614 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6766 -1.7490 1.2491 33 1 1.4576 -1.2148 4.5932 34 1 3.9239 0.2036 4.1041 35 1 3.9528 -1.4570 3.4640 36 1 4.3312 -3.8734 7.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872567364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:02 Heat of formation + Delta-G solvation = -30.871079 kcal Electronic energy + Delta-G solvation = -22617.754667 eV Core-core repulsion = 18996.338825 eV Total energy + Delta-G solvation = -3621.415842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21314 -37.33048 -36.67503 -36.31955 -35.62433 -35.30978 -31.69569 -30.66754 -27.34479 -26.67406 -25.74746 -25.25380 -24.17526 -20.59775 -19.75685 -19.07611 -18.76704 -17.40809 -16.72120 -16.14342 -15.97566 -15.43316 -15.12377 -14.85276 -14.75359 -14.51531 -13.76991 -13.48717 -13.04115 -13.00616 -12.68560 -12.56382 -12.53429 -12.15019 -11.89162 -11.53576 -11.30785 -11.15628 -11.10732 -10.96460 -10.75099 -10.40818 -10.31802 -10.22758 -10.12818 -9.77129 -9.69699 -9.68277 -9.41584 -9.32112 -8.70941 -8.42725 -6.05894 -4.17860 -0.01242 0.38755 0.76768 1.12830 1.69431 2.22467 3.12597 3.23918 3.32670 3.35216 3.59643 4.19586 4.35235 4.43337 4.66249 4.73037 5.02009 5.19123 5.19827 5.44352 5.53148 5.63324 5.77576 6.33534 6.66866 6.76247 6.84872 6.88441 7.01632 7.14967 7.28626 7.47175 7.65999 7.95576 8.06898 8.30131 8.81089 9.47943 10.95486 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002601 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.335182 B =10764.190816 C =11272.275680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.580 4.580 13 S 2.591 3.409 14 O -0.958 6.958 15 O -0.961 6.961 16 N -1.127 6.127 17 C 0.193 3.807 18 C 0.041 3.959 19 N -0.447 5.447 20 C 0.058 3.942 21 C -0.201 4.201 22 Cl 0.005 6.995 23 S 0.205 5.795 24 H 0.027 0.973 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.415 0.585 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 -4.446 20.284 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.714 4.714 13 S 2.690 3.310 14 O -0.948 6.948 15 O -0.951 6.951 16 N -0.884 5.884 17 C 0.063 3.937 18 C -0.237 4.237 19 N -0.163 5.163 20 C -0.096 4.096 21 C -0.349 4.349 22 Cl 0.033 6.967 23 S 0.458 5.542 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.248 0.752 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.779 -2.744 20.068 21.359 hybrid contribution 0.653 -2.270 -0.281 2.379 sum 7.432 -5.015 19.787 21.723 Atomic orbital electron populations 1.22287 0.96894 1.00714 1.02349 1.17947 0.92861 0.92231 0.89024 1.22285 0.99757 0.97764 1.02410 1.20976 1.31692 1.12092 0.89319 0.92176 1.24940 0.94878 0.94981 0.98966 1.69809 1.36316 1.22617 1.23412 0.86477 0.78644 0.79626 0.82884 1.19809 1.20964 1.20959 1.30527 1.11342 1.13059 1.16470 1.05799 0.74548 0.75149 0.75538 1.93572 1.29104 1.86534 1.85603 1.93547 1.78127 1.37926 1.85465 1.56007 1.12523 1.71453 1.48433 1.19816 0.82374 1.02389 0.89118 1.27070 1.03652 0.91916 1.01069 1.66488 1.14395 1.17499 1.17870 1.21957 1.00783 1.00350 0.86538 1.27135 1.16599 0.98614 0.92599 1.98384 1.94234 1.98145 1.05932 1.84422 1.63261 1.07506 0.98988 0.95397 0.88590 0.94398 0.94388 0.88622 0.95302 0.92777 0.86252 0.85941 0.75158 0.87608 0.87969 0.79710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 2 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 3 C -0.16 -3.89 7.77 37.15 0.29 -3.60 16 4 C -0.50 -12.82 8.01 -34.44 -0.28 -13.10 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.88 -23.71 9.35 55.43 0.52 -23.19 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C -0.58 -10.62 5.01 37.16 0.19 -10.43 16 13 S 2.59 44.67 4.49 -107.50 -0.48 44.19 16 14 O -0.96 -19.20 15.70 -57.54 -0.90 -20.11 16 15 O -0.96 -18.51 15.12 -57.54 -0.87 -19.38 16 16 N -1.13 -14.29 5.88 -11.66 -0.07 -14.36 16 17 C 0.19 2.08 6.71 -5.19 -0.03 2.05 16 18 C 0.04 0.43 6.78 -13.48 -0.09 0.34 16 19 N -0.45 -4.88 10.54 -11.83 -0.12 -5.01 16 20 C 0.06 0.53 11.32 -19.12 -0.22 0.31 16 21 C -0.20 -1.76 7.21 29.16 0.21 -1.55 16 22 Cl 0.00 0.04 29.31 -51.86 -1.52 -1.48 16 23 S 0.21 1.86 23.18 -107.50 -2.49 -0.63 16 24 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 25 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 32 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 33 H 0.42 4.74 8.61 -34.47 -0.30 4.44 16 34 H 0.11 1.04 7.69 -51.93 -0.40 0.65 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.19 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -31.05 334.87 -9.71 -40.75 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.97 Total: 5.12 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 0.18 Total: -26.25 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.33 Total: -42.56 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.77 Total: -39.49 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -2.98 Total: 43.55 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.52 Total: -1.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.05 -9.71 -40.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872567364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.883 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds