Wall clock time and date at job start Tue Mar 31 2020 20:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47301 * 2 1 4 4 C 1.50703 * 109.46475 * 240.00195 * 2 1 3 5 5 H 1.07998 * 119.99553 * 239.99821 * 4 2 1 6 6 C 1.37873 * 120.00055 * 60.00253 * 4 2 1 7 7 N 1.31514 * 120.00086 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47304 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47195 * 119.99845 * 8 6 4 11 11 H 1.48499 * 109.47148 * 239.99669 * 8 6 4 12 12 C 1.53002 * 109.47150 * 120.00538 * 2 1 3 13 13 S 1.81400 * 109.46892 * 299.99575 * 12 2 1 14 14 O 1.42101 * 110.54626 * 68.37787 * 13 12 2 15 15 O 1.42106 * 110.54260 * 291.62471 * 13 12 2 16 16 N 1.65600 * 104.44936 * 180.02562 * 13 12 2 17 17 C 1.46503 * 120.00013 * 64.99585 * 16 13 12 18 18 C 1.50697 * 109.47023 * 165.00240 * 17 16 13 19 19 N 1.28985 * 124.90322 * 90.00190 * 18 17 16 20 20 C 1.31834 * 117.13612 * 180.02562 * 19 18 17 21 21 C 1.33751 * 114.45808 * 0.02562 * 20 19 18 22 22 Cl 1.73608 * 126.03986 * 179.97438 * 21 20 19 23 23 S 1.70978 * 124.90019 * 270.04117 * 18 17 16 24 24 H 1.09004 * 109.47017 * 299.99550 * 1 2 3 25 25 H 1.09001 * 109.47340 * 59.99545 * 1 2 3 26 26 H 1.08996 * 109.47668 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47190 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47295 * 300.00482 * 3 2 1 29 29 H 1.09000 * 109.47018 * 60.00656 * 3 2 1 30 30 H 0.97000 * 119.99797 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46578 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46932 * 59.99508 * 12 2 1 33 33 H 0.96997 * 119.99944 * 245.00200 * 16 13 12 34 34 H 1.09000 * 109.46924 * 45.00111 * 17 16 13 35 35 H 1.08996 * 109.47204 * 285.00244 * 17 16 13 36 36 H 1.08001 * 122.76653 * 179.72777 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3222 -1.1195 -4.0080 9 1 3.1480 -2.2856 -3.6040 10 1 1.1674 -1.5865 -4.8165 11 1 3.1469 -0.1858 -4.8162 12 6 2.0400 -0.7214 1.2492 13 16 1.4354 0.1337 2.7303 14 8 0.0280 -0.0184 2.8545 15 8 2.0481 1.4099 2.8544 16 7 2.0542 -0.7402 3.9935 17 6 3.5028 -0.7966 4.2052 18 6 3.7882 -1.3245 5.5876 19 7 3.9452 -2.5700 5.8841 20 6 4.1892 -2.8613 7.1465 21 6 4.2401 -1.8007 7.9598 22 17 4.5395 -1.8380 9.6695 23 16 3.9497 -0.3590 6.9894 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 0.7086 1.1614 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6766 -1.7490 1.2491 33 1 1.4576 -1.2148 4.5932 34 1 3.9239 0.2036 4.1041 35 1 3.9528 -1.4570 3.4640 36 1 4.3312 -3.8734 7.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872567364.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:01 Heat of formation + Delta-G solvation = -52.452043 kcal Electronic energy + Delta-G solvation = -22618.690488 eV Core-core repulsion = 18996.338825 eV Total energy + Delta-G solvation = -3622.351663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93900 -38.15434 -38.09394 -37.96053 -36.93817 -36.46702 -33.60535 -31.46251 -28.34940 -28.08972 -27.64661 -27.21583 -24.94247 -21.46614 -21.25209 -20.37157 -19.72082 -18.73383 -17.86832 -17.63078 -17.04754 -16.83771 -16.60321 -16.13926 -15.65929 -15.52788 -14.98145 -14.72823 -14.48152 -14.38781 -14.16000 -13.79305 -13.48540 -13.29967 -13.18440 -13.03191 -12.89634 -12.84600 -12.71964 -12.46352 -12.16207 -12.10376 -11.95026 -11.93117 -11.52566 -11.38142 -10.97486 -10.70184 -10.43302 -10.39421 -10.36781 -10.03539 -8.00775 -6.18734 -0.84132 -0.51861 -0.28720 0.42317 1.02305 1.44509 1.46044 1.48300 1.57207 1.95491 2.46219 2.80305 2.88243 3.21979 3.34201 3.65601 4.01155 4.07401 4.19311 4.29019 4.41530 4.60211 4.64815 4.87353 4.90779 4.91899 5.03749 5.13013 5.43602 5.54987 5.68539 5.91466 6.02342 6.15853 6.37596 6.43004 6.86805 7.49713 8.99109 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002601 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.335182 B =10764.190816 C =11272.275680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.284 1.284 12 C -0.586 4.586 13 S 2.617 3.383 14 O -0.988 6.988 15 O -0.982 6.982 16 N -1.112 6.112 17 C 0.182 3.818 18 C 0.028 3.972 19 N -0.463 5.463 20 C 0.052 3.948 21 C -0.201 4.201 22 Cl 0.016 6.984 23 S 0.219 5.781 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.423 0.577 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 -5.658 21.597 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.978 6.978 15 O -0.971 6.971 16 N -0.873 5.873 17 C 0.053 3.947 18 C -0.250 4.250 19 N -0.179 5.179 20 C -0.102 4.102 21 C -0.349 4.349 22 Cl 0.044 6.956 23 S 0.472 5.528 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.259 0.741 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.056 -3.964 21.380 23.188 hybrid contribution 0.291 -1.904 -0.555 2.004 sum 8.347 -5.868 20.825 23.190 Atomic orbital electron populations 1.22233 0.97956 1.00473 1.01363 1.17927 0.92203 0.92317 0.90886 1.22216 1.00105 0.98152 1.01423 1.21339 1.31399 1.12197 0.90337 0.91742 1.25656 0.95268 0.95665 1.01630 1.69951 1.37300 1.23751 1.23698 0.85594 0.77973 0.78776 0.79794 1.18912 1.21237 1.21036 1.30470 1.13064 1.13430 1.14942 1.04755 0.73543 0.74732 0.75561 1.93526 1.31241 1.86959 1.86123 1.93516 1.78339 1.39431 1.85844 1.55511 1.13831 1.70989 1.46969 1.20089 0.80834 1.03590 0.90184 1.26947 1.04612 0.92202 1.01208 1.66491 1.14682 1.17836 1.18857 1.22268 1.00559 1.01376 0.86023 1.27228 1.16050 0.98466 0.93193 1.98393 1.94108 1.98099 1.04989 1.84375 1.62713 1.07303 0.98387 0.94799 0.91143 0.94195 0.93664 0.91281 0.94604 0.93017 0.83743 0.84341 0.74146 0.86683 0.86303 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.77 71.98 0.56 -7.30 16 2 C 0.07 3.17 0.52 -52.93 -0.03 3.15 16 3 C -0.16 -7.61 7.77 71.98 0.56 -7.06 16 4 C -0.51 -25.89 8.01 25.60 0.21 -25.68 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 6 C 0.02 0.89 5.15 84.65 0.44 1.32 16 7 N -0.91 -49.51 9.35 21.45 0.20 -49.31 16 8 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C -0.59 -20.38 5.01 71.98 0.36 -20.02 16 13 S 2.62 86.37 4.49 -56.49 -0.25 86.12 16 14 O -0.99 -38.74 15.70 -127.65 -2.00 -40.75 16 15 O -0.98 -36.52 15.12 -127.65 -1.93 -38.45 16 16 N -1.11 -25.92 5.88 -190.79 -1.12 -27.04 16 17 C 0.18 3.51 6.71 85.63 0.57 4.08 16 18 C 0.03 0.53 6.78 88.53 0.60 1.13 16 19 N -0.46 -9.13 10.54 -191.36 -2.02 -11.15 16 20 C 0.05 0.83 11.32 83.67 0.95 1.78 16 21 C -0.20 -3.11 7.21 66.80 0.48 -2.63 16 22 Cl 0.02 0.21 29.31 -2.72 -0.08 0.13 16 23 S 0.22 3.56 23.18 -56.49 -1.31 2.25 16 24 H 0.03 1.55 5.46 -2.38 -0.01 1.54 16 25 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 29 H 0.04 1.60 5.46 -2.39 -0.01 1.58 16 30 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 31 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 32 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 33 H 0.42 8.82 8.61 -96.75 -0.83 7.98 16 34 H 0.12 2.01 7.69 -2.39 -0.02 1.99 16 35 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -65.40 334.87 -1.49 -66.89 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.30 Total: 19.02 kcal Atomic # 6 Polarization: -55.93 SS G_CDS: 4.70 Total: -51.23 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.94 Total: -87.50 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -3.93 Total: -79.20 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 89.93 SS G_CDS: -1.56 Total: 88.37 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -65.40 -1.49 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872567364.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.439 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds